cluster # 4861

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Oryza sativa
cluster # 4861 cluster # 4861 Sequences # 3 consensus # 1

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4861#0 length = 542 sequences # 3

consensusID : consensus_4861#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 542
fasta sequence

                              [TTTTTTTTTTTTAAAAACAAACTGCGAGGATCGTCGCGATGCTATAGCATTTAACCGTGCGGTTCGAGCTGATTTCTCACCGGGAATTAACACAAAAATTACAGCAAAAATACATGCT-GGTTTGTTTTAACTGAAAGTCTGAAACAGGAGGTGAATTGTGCACGGGCTTAATCAGCACACGCGCGCAACAATATTGGCTTTCTTTCTTCCCCGAGAGAATGCTAGGGAGGGCTGATGAAGAAGATTTATTCAGACGACTTGACGATG-AAGTTCTGGCGCC-TGACGGGGTTCATCACCA-CCGGCGGCC--CGGCCGTCCGCGGCCACGCCTGGAAC-TTCTTGTCCGTCTCCTTCCCCCACTCGTCAGTCGCCATGGTCCGAGTCGTCGTGCCTCCAAAAAGCTTTCCTTCCGCGATGTAGATCTCGCAGACATAGGCGAATGCGAAGGATGCAGCCACTGATCCGATGATGTACTTGGTCGCCATGCTGTGTGATCACCAGCAGCTAGCTAGCCCTTGAGCAAACAGTGTGGTTCCTAGATGTCT]

[+] EMBL CF330835             [TTTTTTTTTTTTAAAAACAAACTGCGAGGATCGTCGCGATGCTATAGCATTTAACCGTGCGGTTCGAGCTGATTTCTCACCGGGAATTAACACAAAAATTACAGCAAAAATACATGCTGGGTTTGTTTTAACTGAAAGTCTGAAACAGGAGGTGAATTGTGCACGGGCTTAATCAGCACACGCGCGCAACAATATTGGCTTTCTTTCTTCCCCGAAAGAATGCTAGGGAGGGCTGATGAAAAAAATTTATTCAAACGACTTGACGATGAAAGTTCTGGCGCCTTGACGGGGTTCATCACCANCCGGCGGCCNNCGGCCGTCCGCGGCCACGCCTGGAACATTCTTGTCCGTCTCCTTCCCCCACTCGTCAGTCGCCATGGTCCGAGTCGTCGTGCCTCCAAAAAGCTTTCCTTCCGCGATGTAGATCTCGCAGACATAGGCGAATGCGAAGGATGCAGCCACTGATCCGATGATGTACTTGGTCGCCATGCTGTGTGATCACCAGCAGCTAGCTA                                  ]
[-] EMBL CF330836             [                                          TATAGCATTTAACCGTGCGGTTCGAGCTGATTTCTCACCGGGAATTAACACAAAAATTACAGCAAAAATACATGCT GGTTTGTTTTAACTGAAAGTCTGAAACAGGAGGTGAATTGTGCACGGGCTTAATCAGCACACGCGCGCAACAATATTGGCTTTCTTTCTTCCCCGAGAGAATGCTAGGGAGGGCTGATGAAGAAGATTTATTCAGACGACTTGACGATG AAGTTCTGGCGCC TGACGGGGTTCATCACCA CCGGCGGCC  CGGCCGTCCGCGGCCACGCCTGGAAC TTCTTGTCCGTCTCCTTCCCCCACTCGTCAGTCGCCATGGTCCGAGTCGTCGTGCCTCCAAGAAGCTTTCCTTCCGCGATGTAGATCTCGCAGACATAGGCGAATGCGAAGGATGCAGCCACTGATCCGATGATGTACTTGGTCGCCATGCTGTGTGATCACCAGCAGCTAGCTAGCCCTTGAGCAAACAGTGTGGTTCCTAGATGTCT]
[-] EMBL AU082360             [                                                                                               tttTTACAGCAAAAATACATGCT AGTTTGCTTTAACTGAAAGTCTGAAACAGGAGGTGAATTGTGCACGGGCTTAATCAGCACACGCGCGCAACAATATTGGCTTTCTTTCTTCCCCGAGAGAATGCTAGGGAGGGCTGATGAAGAAGATTTATTCAGACGACTTGACGATG AAGTTCTGGCGCC TGACGGGGTTCATCACCA CCGGCGGCC  CGGCCGTCCGCGGCCACNCCTGGAAC TTCTTGTCCGTCTCCTTCCCCCACTCGTCAGTCGCCATGGTCCGAGTCGTCGTGCCTagttt                                                                                                                                                   ]




>consensus_4861#0
TTTTTTTTTTTTAAAAACAAACTGCGAGGATCGTCGCGATGCTATAGCATTTAACCGTGC
GGTTCGAGCTGATTTCTCACCGGGAATTAACACAAAAATTACAGCAAAAATACATGCTGG
TTTGTTTTAACTGAAAGTCTGAAACAGGAGGTGAATTGTGCACGGGCTTAATCAGCACAC
GCGCGCAACAATATTGGCTTTCTTTCTTCCCCGAGAGAATGCTAGGGAGGGCTGATGAAG
AAGATTTATTCAGACGACTTGACGATGAAGTTCTGGCGCCTGACGGGGTTCATCACCACC
GGCGGCCCGGCCGTCCGCGGCCACGCCTGGAACTTCTTGTCCGTCTCCTTCCCCCACTCG
TCAGTCGCCATGGTCCGAGTCGTCGTGCCTCCAAAAAGCTTTCCTTCCGCGATGTAGATC
TCGCAGACATAGGCGAATGCGAAGGATGCAGCCACTGATCCGATGATGTACTTGGTCGCC
ATGCTGTGTGATCACCAGCAGCTAGCTAGCCCTTGAGCAAACAGTGTGGTTCCTAGATGT
CT

clustalw multiple alignements is not computed in this case