cluster # 4866

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Oryza sativa
cluster # 4866 cluster # 4866 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4866#0 length = 1455 sequences # 2

consensus_4866#1 length = 301 sequences # 1

consensusID : consensus_4866#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1455
fasta sequence

                              [ACTCAGTATCCGTCTCGCTCTCCTGCCTCGCCGCCGGCGATCGATCGCCGGGGAGAGGGTCTCTCCCCCAAATGCCGCGCCGCCGCCTCCCTCTACTCCTCCTCCTCCCCATTACCCTCACCCTCTTCCTCCTCTTCCCCTCTCCCCCTCCCCCGCGGCCGCCGCCGCATCAGCCTCAGCCTCAGCCGCTCCCCTGCGGCGCCGCCCCCTCCGACGCCACCGCCGGCCGCTGGGTCCCCACCCGGGAGCCCTTGCCGCCGCCGCTCTACACCTCCTCCTGCCCCTTCCACCGCAACGCCTGGAACTGCCCCCGCAACAGCCGCCCACCCGTCGCCGCGCTCTCCTGGGCGCCCGCCCGCTGCGGCGGCGGCGCCGTCCCGAGGATCGACGCCGCGGAGTTCCTGGCCGTGGCCCGGGGGCGGCGGATCGGGCTCGTGGGGGACTCGCTGTCGGAGAACCTGGTCGTGGCGCTGCTGTGCGCGCTCCGGTCGGCGGACGGCGGCGCGAGCAAGTGGAAGCGGCGGGGCGCGTGGCGCGGCGGCTACTTCCCCAGGGATGACGTCATCGTCGCGTACCACCGCGCAGTTCTCCTCGCCAAGTACACGTGGCAGCCTGTAGAGAATTCCAAAGAGCTTCACAAGGATGGAATAAAGGGAACTTACAGAGTGGATGTTGACATTCCTGCTGATGAATGGGTAAATGTCACCAGGTTCTATGATGTGCTCATTTTCAACACTGGACATTGGTGGGGCCTGGATAAATTCCCAAAAGAGACCCCCCTTGTTTTCTACCGAGGAGGGAAACCAATTGAGCCGCCACTTGGCATCTACGATGGATTGAAAGTAGTCCTCAAAAGTATGGCCTCTTACATTGAAAGGGAGGTCCCAAGTAAAACACTGAAACTGTGGCGCTCACAGTCACCCAGGCACTTCTATGGAGGTGAATGGGATCACAATGGCAGCTGCGTGTCTGATCGGCTTCTACAAGAACACGAGCTCGACTTGT-GGTTCGATCCCAGGTTTGGAGGAGTGAACAAAGAAGCAAGGCTAGTGAATTCGGCGATTCAGGAGGCCCTGATTGGCACAGACATCCAGCTGCTCAACCTGACCTACATGAGCGAGTTCCGTGCCGATGCGCATCCGGCAATCTGGCTCGGAAAGAAGGACGCGGTGGCTGTATGGGGGCAGGACTGCATGCATTGGTGCCTTCCTGGCGTGCCGGACACTTGGGTCGACATCTTGGCTGCACGGATCTTGCATCACTTCAAGCAGGCAAATGGTTGATGACATGCTGAAGCTTGGACCATTGTGGCAACTGCACTGTAAATGTTGTGTGGGAACAAACACGATGAATGGCATGCTGTATTTAGAACAGGAGCATTAAAAAGCTAGGTAGCTACTCTTGTTGCCTGTAATTCTTTTCTTCTTATGGAAAACCAAGATAGGAGATGGTGGA]

[+] EMBL AK069109             [ACTCAGTATCCGTCTCGCTCTCCTGCCTCGCCGCCGGCGATCGATCGCCGGGGAGAGGGTCTCTCCCCCAAATGCCGCGCCGCCGCCTCCCTCTACTCCTCCTCCTCCCCATTACCCTCACCCTCTTCCTCCTCTTCCCCTCTCCCCCTCCCCCGCGGCCGCCGCCGCATCAGCCTCAGCCTCAGCCGCTCCCCTGCGGCGCCGCCCCCTCCGACGCCACCGCCGGCCGCTGGGTCCCCACCCGGGAGCCCTTGCCGCCGCCGCTCTACACCTCCTCCTGCCCCTTCCACCGCAACGCCTGGAACTGCCCCCGCAACAGCCGCCCACCCGTCGCCGCGCTCTCCTGGGCGCCCGCCCGCTGCGGCGGCGGCGCCGTCCCGAGGATCGACGCCGCGGAGTTCCTGGCCGTGGCCCGGGGGCGGCGGATCGGGCTCGTGGGGGACTCGCTGTCGGAGAACCTGGTCGTGGCGCTGCTGTGCGCGCTCCGGTCGGCGGACGGCGGCGCGAGCAAGTGGAAGCGGCGGGGCGCGTGGCGCGGCGGCTACTTCCCCAGGGATGACGTCATCGTCGCGTACCACCGCGCAGTTCTCCTCGCCAAGTACACGTGGCAGCCTGTAGAGAATTCCAAAGAGCTTCACAAGGATGGAATAAAGGGAACTTACAGAGTGGATGTTGACATTCCTGCTGATGAATGGGTAAATGTCACCAGGTTCTATGATGTGCTCATTTTCAACACTGGACATTGGTGGGGCCTGGATAAATTCCCAAAAGAGACCCCCCTTGTTTTCTACCGAGGAGGGAAACCAATTGAGCCGCCACTTGGCATCTACGATGGATTGAAAGTAGTCCTCAAAAGTATGGCCTCTTACATTGAAAGGGAGGTCCCAAGTAAAACACTGAAACTGTGGCGCTCACAGTCACCCAGGCACTTCTATGGAGGTGAATGGGATCACAATGGCAGCTGCGTGTCTGATCGGCTTCTACAAGAACACGAGCTCGACTTGT GGTTCGATCCCAGGTTTGGAGGAGTGAACAAAGAAGCAAGGCTAGTGAATTCGGCGATTCAGGAGGCCCTGATTGGCACAGACATCCAGCTGCTCAACCTGACCTACATGAGCGAGTTCCGTGCCGATGCGCATCCGGCAATCTGGCTCGGAAAGAAGGACGCGGTGGCTGTATGGGGGCAGGACTGCATGCATTGGTGCCTTCCTGGCGTGCCGGACACTTGGGTCGACATCTTGGCTGCACGGATCTTGCATCACTTCAAGCAGGCAAATGGTTGATGACATGCTGAAGCTTGGACCATTGTGGCAACTGCACTGTAAATGTTGTGTGGGAACAAACACGATGAATGGCATGCTGTATTTAGAACAGGAGCATTAAAAAGCTAGGTAGCTACTCTTGTTGCCTGTAATTCTTTTCTTCTTATGGAAAACCAAGATAGGAGATGGTGGA]
[+] EMBL C73803               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        CCTGCTGATGAATGGGTAAATGTCACCAGGTTCTATGATGTGCTCATTTTCAACACTGGACATTGGTGGGGCCTGGATAAATTCCCAAAAGAGACCCCCCTTGTTTTCTACCGAGGAGGGAAACCAATTGAGCCGCCACTTGGCATCTACGATGGATTGAAAGTAGTCCTCAAAAGTATGGCCTCTTACATTGAAAGGGAGGTCCCAAGTAAAACACTGAAACTGTGGCGCTCACAGTCACCCAGGCACTTCTATGGAGGTGAATGGGATCACAATGGCAGCTGCGTGTCTGATCGGCTTCTACAAGAACACGAGCTCGACTTGTGGGTTCGATCCCAGGTTTGGAGGAGTGAACNAAGAAGCAAGGCTAGTG                                                                                                                                                                                                                                                                                                                                                                                                                   ]




>consensus_4866#0
ACTCAGTATCCGTCTCGCTCTCCTGCCTCGCCGCCGGCGATCGATCGCCGGGGAGAGGGT
CTCTCCCCCAAATGCCGCGCCGCCGCCTCCCTCTACTCCTCCTCCTCCCCATTACCCTCA
CCCTCTTCCTCCTCTTCCCCTCTCCCCCTCCCCCGCGGCCGCCGCCGCATCAGCCTCAGC
CTCAGCCGCTCCCCTGCGGCGCCGCCCCCTCCGACGCCACCGCCGGCCGCTGGGTCCCCA
CCCGGGAGCCCTTGCCGCCGCCGCTCTACACCTCCTCCTGCCCCTTCCACCGCAACGCCT
GGAACTGCCCCCGCAACAGCCGCCCACCCGTCGCCGCGCTCTCCTGGGCGCCCGCCCGCT
GCGGCGGCGGCGCCGTCCCGAGGATCGACGCCGCGGAGTTCCTGGCCGTGGCCCGGGGGC
GGCGGATCGGGCTCGTGGGGGACTCGCTGTCGGAGAACCTGGTCGTGGCGCTGCTGTGCG
CGCTCCGGTCGGCGGACGGCGGCGCGAGCAAGTGGAAGCGGCGGGGCGCGTGGCGCGGCG
GCTACTTCCCCAGGGATGACGTCATCGTCGCGTACCACCGCGCAGTTCTCCTCGCCAAGT
ACACGTGGCAGCCTGTAGAGAATTCCAAAGAGCTTCACAAGGATGGAATAAAGGGAACTT
ACAGAGTGGATGTTGACATTCCTGCTGATGAATGGGTAAATGTCACCAGGTTCTATGATG
TGCTCATTTTCAACACTGGACATTGGTGGGGCCTGGATAAATTCCCAAAAGAGACCCCCC
TTGTTTTCTACCGAGGAGGGAAACCAATTGAGCCGCCACTTGGCATCTACGATGGATTGA
AAGTAGTCCTCAAAAGTATGGCCTCTTACATTGAAAGGGAGGTCCCAAGTAAAACACTGA
AACTGTGGCGCTCACAGTCACCCAGGCACTTCTATGGAGGTGAATGGGATCACAATGGCA
GCTGCGTGTCTGATCGGCTTCTACAAGAACACGAGCTCGACTTGTGGTTCGATCCCAGGT
TTGGAGGAGTGAACAAAGAAGCAAGGCTAGTGAATTCGGCGATTCAGGAGGCCCTGATTG
GCACAGACATCCAGCTGCTCAACCTGACCTACATGAGCGAGTTCCGTGCCGATGCGCATC
CGGCAATCTGGCTCGGAAAGAAGGACGCGGTGGCTGTATGGGGGCAGGACTGCATGCATT
GGTGCCTTCCTGGCGTGCCGGACACTTGGGTCGACATCTTGGCTGCACGGATCTTGCATC
ACTTCAAGCAGGCAAATGGTTGATGACATGCTGAAGCTTGGACCATTGTGGCAACTGCAC
TGTAAATGTTGTGTGGGAACAAACACGATGAATGGCATGCTGTATTTAGAACAGGAGCAT
TAAAAAGCTAGGTAGCTACTCTTGTTGCCTGTAATTCTTTTCTTCTTATGGAAAACCAAG
ATAGGAGATGGTGGA

consensusID : consensus_4866#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 301
fasta sequence

                              [GTTGATGACATGGCGTGAAGCTGTGGACCATTTGTGGCAAACTGCAACTTGTAAAATTTTGTGTGGGAACAAAACACGATGAATGGCATGCTGTATTTAGAACACGGAGCACTTGAAAAGCTAGGTAGCTACTCTTGTTGCCTGTAATTATTTTCTTCTTTCTTATGGAAAACCAAGATAGGAGATGGTGGAGTTAACTGTTAAGTACACTTAAATACTTACTGAAGAAATTTTGTACTTGCACACTTGACGTTGATGAAACTGCAATTGCCTCAGTAGAGTGAAGCTTCACACTAAAAAA]

[+] EMBL BI801625             [GTTGATGACATGGCGTGAAGCTGTGGACCATTTGTGGCAAACTGCAACTTGTAAAATTTTGTGTGGGAACAAAACACGATGAATGGCATGCTGTATTTAGAACACGGAGCACTTGAAAAGCTAGGTAGCTACTCTTGTTGCCTGTAATTATTTTCTTCTTTCTTATGGAAAACCAAGATAGGAGATGGTGGAGTTAACTGTTAAGTACACTTAAATACTTACTGAAGAAATTTTGTACTTGCACACTTGACGTTGATGAAACTGCAATTGCCTCAGTAGAGTGAAGCTTCACACTAAAAAA]




>consensus_4866#1
GTTGATGACATGGCGTGAAGCTGTGGACCATTTGTGGCAAACTGCAACTTGTAAAATTTT
GTGTGGGAACAAAACACGATGAATGGCATGCTGTATTTAGAACACGGAGCACTTGAAAAG
CTAGGTAGCTACTCTTGTTGCCTGTAATTATTTTCTTCTTTCTTATGGAAAACCAAGATA
GGAGATGGTGGAGTTAACTGTTAAGTACACTTAAATACTTACTGAAGAAATTTTGTACTT
GCACACTTGACGTTGATGAAACTGCAATTGCCTCAGTAGAGTGAAGCTTCACACTAAAAA
A

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4866#0      ACTCAGTATCCGTCTCGCTCTCCTGCCTCGCCGCCGGCGATCGATCGCCGGGGAGAGGGT 60
consensus_4866#1      ------------------------------------------------------------
                                                                                  

consensus_4866#0      CTCTCCCCCAAATGCCGCGCCGCCGCCTCCCTCTACTCCTCCTCCTCCCCATTACCCTCA 120
consensus_4866#1      ------------------------------------------------------------
                                                                                  

consensus_4866#0      CCCTCTTCCTCCTCTTCCCCTCTCCCCCTCCCCCGCGGCCGCCGCCGCATCAGCCTCAGC 180
consensus_4866#1      ------------------------------------------------------------
                                                                                  

consensus_4866#0      CTCAGCCGCTCCCCTGCGGCGCCGCCCCCTCCGACGCCACCGCCGGCCGCTGGGTCCCCA 240
consensus_4866#1      ------------------------------------------------------------
                                                                                  

consensus_4866#0      CCCGGGAGCCCTTGCCGCCGCCGCTCTACACCTCCTCCTGCCCCTTCCACCGCAACGCCT 300
consensus_4866#1      ------------------------------------------------------------
                                                                                  

consensus_4866#0      GGAACTGCCCCCGCAACAGCCGCCCACCCGTCGCCGCGCTCTCCTGGGCGCCCGCCCGCT 360
consensus_4866#1      ------------------------------------------------------------
                                                                                  

consensus_4866#0      GCGGCGGCGGCGCCGTCCCGAGGATCGACGCCGCGGAGTTCCTGGCCGTGGCCCGGGGGC 420
consensus_4866#1      ------------------------------------------------------------
                                                                                  

consensus_4866#0      GGCGGATCGGGCTCGTGGGGGACTCGCTGTCGGAGAACCTGGTCGTGGCGCTGCTGTGCG 480
consensus_4866#1      ------------------------------------------------------------
                                                                                  

consensus_4866#0      CGCTCCGGTCGGCGGACGGCGGCGCGAGCAAGTGGAAGCGGCGGGGCGCGTGGCGCGGCG 540
consensus_4866#1      ------------------------------------------------------------
                                                                                  

consensus_4866#0      GCTACTTCCCCAGGGATGACGTCATCGTCGCGTACCACCGCGCAGTTCTCCTCGCCAAGT 600
consensus_4866#1      -----------------GTTGATGACATGGCGTGAAGCTGTGGACCATTTGTGGCAAACT 43
                                       *  *    * * ****    * * * *    *  * ** ** *

consensus_4866#0      ACACGTGGCAGCCTGTAGAGAATTCCAAAGAGCTTCACAAGGATGGAATAAAGGGAACTT 660
consensus_4866#1      -------GCAACTTGTAAAATTTTGTGTGGGA----ACAAAACACGATGAATGGCATGCT 92
                             *** * **** *   **     *      ****     **  ** ** *   *

consensus_4866#0      ACAGAGTGGATGTTGA-CATTCCTGCTGATGAATGGGTAAATGTCACCAGGTTCTATGAT 719
consensus_4866#1      GTATTTAGAACACGGAGCACTTGAAAAGCTAGGTAGCTAC-TCTTGTTGCCTGTAATTAT 151
                        *    * *    ** ** *      * *   * * **  * *       *   ** **

consensus_4866#0      GTGCTCATTTTCAACACTGGACATTGGTGGGGCCTGGATAAATTCCCAAAAGAGACCCCC 779
consensus_4866#1      TTTCTTCTTTCTTATGGAAAACCAAGATAGGAGATGGTGGAGTTAACTGTTAAG-TACAC 210
                       * **  ***   *      **   * * **   ***   * **  *     **   * *

consensus_4866#0      CTTGTTTTCTACCGAGGAGGGAAACCAATTGAGCCGCCACTTGGCATCTACGATGGATTG 839
consensus_4866#1      TTAAATACTTACTGAAGAAATTTTGTACTTGCAC----ACTTGACGTTGATGA--AACTG 264
                       *   *   *** ** **        * ***  *    ***** * *  * **   * **

consensus_4866#0      AAAGTAGTCCTCAAAAGTATGGCCTCTTACATTGAAAGGGAGGTCCCAAGTAAAACACTG 899
consensus_4866#1      CAATTG--CCTCAGTAGAGTGAAGCTTCACACTAAAAAA--------------------- 301
                       ** *   *****  **  **     * *** * ***                       

consensus_4866#0      AAACTGTGGCGCTCACAGTCACCCAGGCACTTCTATGGAGGTGAATGGGATCACAATGGC 959
consensus_4866#1      ------------------------------------------------------------
                                                                                  

consensus_4866#0      AGCTGCGTGTCTGATCGGCTTCTACAAGAACACGAGCTCGACTTGTGGTTCGATCCCAGG 1019
consensus_4866#1      ------------------------------------------------------------
                                                                                  

consensus_4866#0      TTTGGAGGAGTGAACAAAGAAGCAAGGCTAGTGAATTCGGCGATTCAGGAGGCCCTGATT 1079
consensus_4866#1      ------------------------------------------------------------
                                                                                  

consensus_4866#0      GGCACAGACATCCAGCTGCTCAACCTGACCTACATGAGCGAGTTCCGTGCCGATGCGCAT 1139
consensus_4866#1      ------------------------------------------------------------
                                                                                  

consensus_4866#0      CCGGCAATCTGGCTCGGAAAGAAGGACGCGGTGGCTGTATGGGGGCAGGACTGCATGCAT 1199
consensus_4866#1      ------------------------------------------------------------
                                                                                  

consensus_4866#0      TGGTGCCTTCCTGGCGTGCCGGACACTTGGGTCGACATCTTGGCTGCACGGATCTTGCAT 1259
consensus_4866#1      ------------------------------------------------------------
                                                                                  

consensus_4866#0      CACTTCAAGCAGGCAAATGGTTGATGACATGCTGAAGCTTGGACCATTGTGGCAACTGCA 1319
consensus_4866#1      ------------------------------------------------------------
                                                                                  

consensus_4866#0      CTGTAAATGTTGTGTGGGAACAAACACGATGAATGGCATGCTGTATTTAGAACAGGAGCA 1379
consensus_4866#1      ------------------------------------------------------------
                                                                                  

consensus_4866#0      TTAAAAAGCTAGGTAGCTACTCTTGTTGCCTGTAATTCTTTTCTTCTTATGGAAAACCAA 1439
consensus_4866#1      ------------------------------------------------------------
                                                                                  

consensus_4866#0      GATAGGAGATGGTGGA 1455
consensus_4866#1      ----------------