cluster # 4879

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 4879 cluster # 4879 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4879#0 length = 642 sequences # 1

consensus_4879#1 length = 341 sequences # 1
consensus_4879#2 length = 254 sequences # 1

consensusID : consensus_4879#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 642
fasta sequence

                              [ATCCTCTAAGCATCAATCAGAAGCAAAAGATTTCACAGGCCTGACAAGATCAAGATGTCGTCGTACGGATCAGGATTCATAACTCTGTGCCTCCCCAGCAGGGAACAACATTCTATGGATCTTATGGAGGAAATAACTCGCAATCAACAGCTTCATCGTACCACAATGGATCATCGAAAAGCACCACAGGAAGAGTGCCTGCGCAGCAATATTCAGATTACAAGTCCAAGACTGCAGACCAGTTCTCCTACTACTATAACAGCATAAGCAGCGGCCAAGGCCAGCAGCTGGGAGGTGCTGGCTACTACGACAAGCAGCCAAGCAAGGGCACGACTAAGAGGTATCCGTCACTCAAGGGCTGATCTTAACTGATTTGGCAGTGCTTGATGCATGATCGATGAAGAATAATCAACAGATTGCATATACTCATACAAGCACCGTATATACAAATAGTCATATTGAGAGAGGAAGTCTGTGTGTTGTTGTGAATCTTTCTGTAAACACATGTTTGAGAGCAGCAACTTACCTAGATATGTAGGGTTGTTTAATTTCTTCATGTGGTTCATTAGCCATTAAATAAGATGTATTACTGATCGGTTAGTGATCAGTTGTATATTGGGAATATCAAAATAATGAACCTTA]

[+] EMBL AK058799             [ATCCTCTAAGCATCAATCAGAAGCAAAAGATTTCACAGGCCTGACAAGATCAAGATGTCGTCGTACGGATCAGGATTCATAACTCTGTGCCTCCCCAGCAGGGAACAACATTCTATGGATCTTATGGAGGAAATAACTCGCAATCAACAGCTTCATCGTACCACAATGGATCATCGAAAAGCACCACAGGAAGAGTGCCTGCGCAGCAATATTCAGATTACAAGTCCAAGACTGCAGACCAGTTCTCCTACTACTATAACAGCATAAGCAGCGGCCAAGGCCAGCAGCTGGGAGGTGCTGGCTACTACGACAAGCAGCCAAGCAAGGGCACGACTAAGAGGTATCCGTCACTCAAGGGCTGATCTTAACTGATTTGGCAGTGCTTGATGCATGATCGATGAAGAATAATCAACAGATTGCATATACTCATACAAGCACCGTATATACAAATAGTCATATTGAGAGAGGAAGTCTGTGTGTTGTTGTGAATCTTTCTGTAAACACATGTTTGAGAGCAGCAACTTACCTAGATATGTAGGGTTGTTTAATTTCTTCATGTGGTTCATTAGCCATTAAATAAGATGTATTACTGATCGGTTAGTGATCAGTTGTATATTGGGAATATCAAAATAATGAACCTTA]




>consensus_4879#0
ATCCTCTAAGCATCAATCAGAAGCAAAAGATTTCACAGGCCTGACAAGATCAAGATGTCG
TCGTACGGATCAGGATTCATAACTCTGTGCCTCCCCAGCAGGGAACAACATTCTATGGAT
CTTATGGAGGAAATAACTCGCAATCAACAGCTTCATCGTACCACAATGGATCATCGAAAA
GCACCACAGGAAGAGTGCCTGCGCAGCAATATTCAGATTACAAGTCCAAGACTGCAGACC
AGTTCTCCTACTACTATAACAGCATAAGCAGCGGCCAAGGCCAGCAGCTGGGAGGTGCTG
GCTACTACGACAAGCAGCCAAGCAAGGGCACGACTAAGAGGTATCCGTCACTCAAGGGCT
GATCTTAACTGATTTGGCAGTGCTTGATGCATGATCGATGAAGAATAATCAACAGATTGC
ATATACTCATACAAGCACCGTATATACAAATAGTCATATTGAGAGAGGAAGTCTGTGTGT
TGTTGTGAATCTTTCTGTAAACACATGTTTGAGAGCAGCAACTTACCTAGATATGTAGGG
TTGTTTAATTTCTTCATGTGGTTCATTAGCCATTAAATAAGATGTATTACTGATCGGTTA
GTGATCAGTTGTATATTGGGAATATCAAAATAATGAACCTTA

consensusID : consensus_4879#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 341
fasta sequence

                              [GAGGTANCCGTCACTCANGGGCTGATCTTAACTGATTTGGCAGTGCTTGATGATCGATGAAGAACAACCAACAGATTGCATATACTCATACAAGCACCGTATATACACAAATAATCATATTGAGAAAGGAAGTCTGTGTGTTGTCGTGTATCTTTCTGTAAATACATGTTTGGGAGCAGCAACGAACCTAGATATGTAGGGTTGTTTAATTTCTTCATGTGGTTCATTAGCCATTAAATAAGATGTATTCGATTTGTTCATTGGTTTATTACTGATCGGTCAGTGATCAGTTGTATATTTGGAATATCAAAACAATGAACCTTATTTTGGGTTAAAAAAAA]

[+] EMBL AU085732             [GAGGTANCCGTCACTCANGGGCTGATCTTAACTGATTTGGCAGTGCTTGATGATCGATGAAGAACAACCAACAGATTGCATATACTCATACAAGCACCGTATATACACAAATAATCATATTGAGAAAGGAAGTCTGTGTGTTGTCGTGTATCTTTCTGTAAATACATGTTTGGGAGCAGCAACGAACCTAGATATGTAGGGTTGTTTAATTTCTTCATGTGGTTCATTAGCCATTAAATAAGATGTATTCGATTTGTTCATTGGTTTATTACTGATCGGTCAGTGATCAGTTGTATATTTGGAATATCAAAACAATGAACCTTATTTTGGGTTAAAAAAAA]




>consensus_4879#1
GAGGTANCCGTCACTCANGGGCTGATCTTAACTGATTTGGCAGTGCTTGATGATCGATGA
AGAACAACCAACAGATTGCATATACTCATACAAGCACCGTATATACACAAATAATCATAT
TGAGAAAGGAAGTCTGTGTGTTGTCGTGTATCTTTCTGTAAATACATGTTTGGGAGCAGC
AACGAACCTAGATATGTAGGGTTGTTTAATTTCTTCATGTGGTTCATTAGCCATTAAATA
AGATGTATTCGATTTGTTCATTGGTTTATTACTGATCGGTCAGTGATCAGTTGTATATTT
GGAATATCAAAACAATGAACCTTATTTTGGGTTAAAAAAAA

consensusID : consensus_4879#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 254
fasta sequence

                              [ATCGATCAGAAGCAAGGGATTTCACAGGCCTGACAAGATCAAGATGTCGTCGTACGGNTCAGGGTTTCATAACTCAGTGCCTCCCCAGCAGGGAACAACATTCTATGGNTCTTCCTATGGAGGAAATAACTCGCAATCAACGGCTTCATCGTACCACAATGGNTCATCGAAAAGCACCACAGGAAGAGTGCCTNCGCAGAATTATTCAGATTACAAGTCGATGCTGCAAGACCAGTACTCCTACTACTATANCA]

[+] EMBL C97111               [ATCGATCAGAAGCAAGGGATTTCACAGGCCTGACAAGATCAAGATGTCGTCGTACGGNTCAGGGTTTCATAACTCAGTGCCTCCCCAGCAGGGAACAACATTCTATGGNTCTTCCTATGGAGGAAATAACTCGCAATCAACGGCTTCATCGTACCACAATGGNTCATCGAAAAGCACCACAGGAAGAGTGCCTNCGCAGAATTATTCAGATTACAAGTCGATGCTGCAAGACCAGTACTCCTACTACTATANCA]




>consensus_4879#2
ATCGATCAGAAGCAAGGGATTTCACAGGCCTGACAAGATCAAGATGTCGTCGTACGGNTC
AGGGTTTCATAACTCAGTGCCTCCCCAGCAGGGAACAACATTCTATGGNTCTTCCTATGG
AGGAAATAACTCGCAATCAACGGCTTCATCGTACCACAATGGNTCATCGAAAAGCACCAC
AGGAAGAGTGCCTNCGCAGAATTATTCAGATTACAAGTCGATGCTGCAAGACCAGTACTC
CTACTACTATANCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4879#0      -----------------------------------------ATCCTCTAAGCATCAATCA 19
consensus_4879#2      ----------------------------------------------------ATCGATCA 8
consensus_4879#1      GAGGTANCCGTCACTCANGGGCTGATCTTAACTGATTTGGCAGTGCTTGATGATCGATGA 60
                                                                          *** ** *

consensus_4879#0      GAAGCAAA----AGATTTCACAGGCCTG-ACAAGATCAAGATGTCGTCGTACGGATCAGG 74
consensus_4879#2      GAAGCAAG----GGATTTCACAGGCCTG-ACAAGATCAAGATGTCGTCGTACGGNTCAGG 63
consensus_4879#1      AGAACAACCAACAGATTGCATATACTCATACAAGCACCGTATAT----ACACAAATAATC 116
                        * ***      **** ** *  *    *****  *   ** *      **   * *  

consensus_4879#0      ATT-CATAACTCTGTGCCTCCCCAGCAGGGAACAACATTCTATGGATCTT---ATGGAGG 130
consensus_4879#2      GTTTCATAACTCAGTGCCTCCCCAGCAGGGAACAACATTCTATGGNTCTTCCTATGGAGG 123
consensus_4879#1      ATATTGAGAAAGGAAGTCTGTGTGTTGTCGTGTATCTTTCTGTAAATACATGTTTGGGAG 176
                       *      *      * **          *   * * **** *   *       ***  *

consensus_4879#0      AAATAACTCGC---AATCAACAGCTTCATCGTACCACAATGGATCATCGAAAAGCACCAC 187
consensus_4879#2      AAATAACTCGC---AATCAACGGCTTCATCGTACCACAATGGNTCATCGAAAAGCACCAC 180
consensus_4879#1      CAGCAACGAACCTAGATATGTAGGGTTGTTTAATTTCTTCATGTGGTTCATTAGC-CATT 235
                       *  ***   *    **     *  *  *   *   *      *  *  *  *** *   

consensus_4879#0      AGGAAGAGTGCCTGCGCAGCAATATTCAGATTACAAGTCCAAGACTGCAGACCAGTTCTC 247
consensus_4879#2      AGGAAGAGTGCCTNCGCAGAATTATTCAGATTACAAGTCGATGCTGCAAGACCAGTACTC 240
consensus_4879#1      AAATAAGATGTATTCGATTTGTTCATTGGTTTATTACTGATCGGTCAGTGATCAGTTGTA 295
                      *   *   **  * **      *  *  * ***  * *    *      ** ****  * 

consensus_4879#0      CTACTACTATAACAGCATAAGCAGCGGCCAAGGCCAGCAGCTGGGAGGTGCTGGCTACTA 307
consensus_4879#2      CTACTACTATANCA---------------------------------------------- 254
consensus_4879#1      TATTTGGAATATCAAAACAATGAACCTTATTTTGGGTTAAAAAAAA-------------- 341
                          *   *** **                                              

consensus_4879#0      CGACAAGCAGCCAAGCAAGGGCACGACTAAGAGGTATCCGTCACTCAAGGGCTGATCTTA 367
consensus_4879#2      ------------------------------------------------------------
consensus_4879#1      ------------------------------------------------------------
                                                                                  

consensus_4879#0      ACTGATTTGGCAGTGCTTGATGCATGATCGATGAAGAATAATCAACAGATTGCATATACT 427
consensus_4879#2      ------------------------------------------------------------
consensus_4879#1      ------------------------------------------------------------
                                                                                  

consensus_4879#0      CATACAAGCACCGTATATACAAATAGTCATATTGAGAGAGGAAGTCTGTGTGTTGTTGTG 487
consensus_4879#2      ------------------------------------------------------------
consensus_4879#1      ------------------------------------------------------------
                                                                                  

consensus_4879#0      AATCTTTCTGTAAACACATGTTTGAGAGCAGCAACTTACCTAGATATGTAGGGTTGTTTA 547
consensus_4879#2      ------------------------------------------------------------
consensus_4879#1      ------------------------------------------------------------
                                                                                  

consensus_4879#0      ATTTCTTCATGTGGTTCATTAGCCATTAAATAAGATGTATTACTGATCGGTTAGTGATCA 607
consensus_4879#2      ------------------------------------------------------------
consensus_4879#1      ------------------------------------------------------------
                                                                                  

consensus_4879#0      GTTGTATATTGGGAATATCAAAATAATGAACCTTA 642
consensus_4879#2      -----------------------------------
consensus_4879#1      -----------------------------------