cluster # 4882

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Oryza sativa
cluster # 4882 cluster # 4882 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4882#0 length = 509 sequences # 2

consensus_4882#1 length = 325 sequences # 1

consensusID : consensus_4882#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 509
fasta sequence

                              [CCGGAGTGCGCCATCTGCCTCGCCGAGTTCGCGCGCGGCGACGAGGTCCGCGTGCTCCCGCCGTGCGGCCACGGCTTCCACGCCGCCTGCGTCGACGTCTGGCTCGTGTCCACCTCCACCTGCCCCTCCTGCCGCCGCGCCATCGTCGTCCTCGCGGCGCCGTCGCCTGCAGTCACCGCCGCCGCCACCGACCCCCCGCCGCCGTGCTGCGCCGCCGACGCGGCACAGGCGTCGTCACAGCCACCGCAACCCACCGGCGCCAGCGACCGCGGCGGCTGCCGGACATCGGTGCCGTAGAGCTCCAGCTCTCTCTCGCTCGCGTACGTGCATCATTCGATTGT-ACATACACACACACCTAGCAAAAACGTGAATAGTAGATACGTGTTCCGAGAGA-TTTTTTCTTGTACTACGCAGCAATGCAACTGTAGTAGATACATGTGTTCTGTAAATACATGCATGTACACATCTCTGTTAATTAACCATCATTTTCCCTTCTTTTTCGAACGATA]

[+] EMBL AK108361             [CCGGAGTGCGCCATCTGCCTCGCCGAGTTCGCGCGCGGCGACGAGGTCCGCGTGCTCCCGCCGTGCGGCCACGGCTTCCACGCCGCCTGCGTCGACGTCTGGCTCGTGTCCACCTCCACCTGCCCCTCCTGCCGCCGCGCCATCGTCGTCCTCGCGGCGCCGTCGCCTGCAGTCACCGCCGCCGCCACCGACCCCCCGCCGCCGTGCTGCGCCGCCGACGCGGCACAGGCGTCGTCACAGCCACCGCAACCCACCGGCGCCAGCGACCGCGGCGGCTGCCGGACATCGGTGCCGTAGAGCTCCAGCTCTCTCTCGCTCGCGTACGTGCATCATTCGATTGT ACATACACACACACCTAGCAAAAACGTGAATAGTAGATACGTGTTCCGAGAGA TTTTTTCTTGTACTACGCAGCAATGCAACTGTAGTAGATACATGTGTTCTGTAAATACATGCATGTACACATCTCTGTTAATTAACCATCATTTTCCCTTCTTTTTCGAACGATA]
[+] EMBL BI809554             [                                                                                                                                                                                                                                  AGGCGTCGTCACAGCCACCGCAACCCACCGGCGCCAGCGACCGCGGCGGCT CCGGACATCGGTGCCGTAGAGCTCCAGCTCTCTCTCGCTCGCGTACGTGCATCATTCGATTGTGACATACACACACACCTAGCAAAAACGTGAATAGTAGATACGTGTTCCGAGAGATTTTTTTCTTGTACTACGCAGCAATGCAACTGTAGTAGATACATGTGTTCTGTAAATACATGCATGT                                                 ]




>consensus_4882#0
CCGGAGTGCGCCATCTGCCTCGCCGAGTTCGCGCGCGGCGACGAGGTCCGCGTGCTCCCG
CCGTGCGGCCACGGCTTCCACGCCGCCTGCGTCGACGTCTGGCTCGTGTCCACCTCCACC
TGCCCCTCCTGCCGCCGCGCCATCGTCGTCCTCGCGGCGCCGTCGCCTGCAGTCACCGCC
GCCGCCACCGACCCCCCGCCGCCGTGCTGCGCCGCCGACGCGGCACAGGCGTCGTCACAG
CCACCGCAACCCACCGGCGCCAGCGACCGCGGCGGCTGCCGGACATCGGTGCCGTAGAGC
TCCAGCTCTCTCTCGCTCGCGTACGTGCATCATTCGATTGTACATACACACACACCTAGC
AAAAACGTGAATAGTAGATACGTGTTCCGAGAGATTTTTTCTTGTACTACGCAGCAATGC
AACTGTAGTAGATACATGTGTTCTGTAAATACATGCATGTACACATCTCTGTTAATTAAC
CATCATTTTCCCTTCTTTTTCGAACGATA

consensusID : consensus_4882#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 325
fasta sequence

                              [GCGTGCGTCACAGCCACCAGCAACCCATCCGGCTGCCATGCTGNCCCGTGCGGTCTGCCGGACATCGGTTCCGTATGAGCTCCAGGCTCTCTGTCGCTCTGCGTACGTGCATCAGTGTCGATTGTACATACACACACACCTAGCCAAAACGTGAATAGTAGATACGTGTTGCCGAGAGATTTTNTTCTTGTACTACGCAGCAATGCAACTGTAGTAGATACATGTGTTCTGTAAATACATGCATGTACACATCTCTGNTAATTAACCATCATTTTCCCTTCTTTTTCGAACGATAATTAACCGTCATTTTCTTCTTCCTTAAAAA]

[+] EMBL BM418563             [GCGTGCGTCACAGCCACCAGCAACCCATCCGGCTGCCATGCTGNCCCGTGCGGTCTGCCGGACATCGGTTCCGTATGAGCTCCAGGCTCTCTGTCGCTCTGCGTACGTGCATCAGTGTCGATTGTACATACACACACACCTAGCCAAAACGTGAATAGTAGATACGTGTTGCCGAGAGATTTTNTTCTTGTACTACGCAGCAATGCAACTGTAGTAGATACATGTGTTCTGTAAATACATGCATGTACACATCTCTGNTAATTAACCATCATTTTCCCTTCTTTTTCGAACGATAATTAACCGTCATTTTCTTCTTCCTTAAAAA]




>consensus_4882#1
GCGTGCGTCACAGCCACCAGCAACCCATCCGGCTGCCATGCTGNCCCGTGCGGTCTGCCG
GACATCGGTTCCGTATGAGCTCCAGGCTCTCTGTCGCTCTGCGTACGTGCATCAGTGTCG
ATTGTACATACACACACACCTAGCCAAAACGTGAATAGTAGATACGTGTTGCCGAGAGAT
TTTNTTCTTGTACTACGCAGCAATGCAACTGTAGTAGATACATGTGTTCTGTAAATACAT
GCATGTACACATCTCTGNTAATTAACCATCATTTTCCCTTCTTTTTCGAACGATAATTAA
CCGTCATTTTCTTCTTCCTTAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4882#0      CCGGAGTGCGCCATCTGCCTCGCCGAGTTCGCGCGCGGCGACGAGGTCCGCGTGCTCCCG 60
consensus_4882#1      ------------------------------------------------------------
                                                                                  

consensus_4882#0      CCGTGCGGCCACGGCTTCCACGCCGCCTGCGTCGACGTCTGGCTCGTGTCCACCTCCACC 120
consensus_4882#1      ------------------------------------------------------------
                                                                                  

consensus_4882#0      TGCCCCTCCTGCCGCCGCGCCATCGTCGTCCTCGCGGCGCCGTCGCCTGCAGTCACCGCC 180
consensus_4882#1      ------------------------------------------------------------
                                                                                  

consensus_4882#0      GCCGCCACCGACCCCCCGCCGCCGTGCTGCGCCGCCGACGCGGCACAGGCGT-CGTCACA 239
consensus_4882#1      ------------------------------------------------GCGTGCGTCACA 12
                                                                      **** *******

consensus_4882#0      GCCACC-GCAACCCA-CCGGC-GCCA-GCGACCGCG-GCGG-CTGCCGGACATCGGTGCC 293
consensus_4882#1      GCCACCAGCAACCCATCCGGCTGCCATGCTGNCCCGTGCGGTCTGCCGGACATCGGTTCC 72
                      ****** ******** ***** **** **   * ** **** *************** **

consensus_4882#0      GTA-GAGCTCCAG-CTCTCTCTCGCTC-GCGTACGTGCATCATT--CGATTGTACATACA 348
consensus_4882#1      GTATGAGCTCCAGGCTCTCTGTCGCTCTGCGTACGTGCATCAGTGTCGATTGTACATACA 132
                      *** ********* ****** ****** ************** *  **************

consensus_4882#0      CACACACCTAGCAAAAACGTGAATAGTAGATACGTGTT-CCGAGAGATTTTTT-CTTGTA 406
consensus_4882#1      CACACACCTAGCCAAAACGTGAATAGTAGATACGTGTTGCCGAGAGATTTTNTTCTTGTA 192
                      ************ ************************* ************ * ******

consensus_4882#0      CTACGCAGCAATGCAACTGTAGTAGATACATGTGTTCTGTAAATACATGCATGTACACAT 466
consensus_4882#1      CTACGCAGCAATGCAACTGTAGTAGATACATGTGTTCTGTAAATACATGCATGTACACAT 252
                      ************************************************************

consensus_4882#0      CTCTGTTAATTAACCATCATTTTCCCTTCTTTTTCGAACGATA----------------- 509
consensus_4882#1      CTCTGNTAATTAACCATCATTTTCCCTTCTTTTTCGAACGATAATTAACCGTCATTTTCT 312
                      ***** *************************************                 

consensus_4882#0      -------------
consensus_4882#1      TCTTCCTTAAAAA 325