cluster # 4886

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Oryza sativa
cluster # 4886 cluster # 4886 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4886#0 length = 705 sequences # 2

consensus_4886#1 length = 511 sequences # 1

consensusID : consensus_4886#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 705
fasta sequence

                              [ACTTCTGCTTCTCCGAGAAGAATGTCTACAACAGCAACACCAAAATTGATGTCTGGAACTACTTCACCATCAAAAACTCGAATTGAAGGATACATGTCCATGACACCATGGTACCCCTCAAGCAAGCAATCGTCAGCAGCTAACTCACCTCCAAGGGGACGTCCCAACCCAGGTCGCACTCCTCGTATTGATGGAAAAGAATTTTTCCGTCAGGCCAGGAGCCGCCTATCATACGAACAATTTGGAGCATTCTTAGCCAACATCAAGGAACTCAATGCTCATAAGCAATCAAGAGAGGATACTCTCAAGAAGGCTGAAGAGATCTTTGGTCCAGACAACAAAGATCTTTACCTCTCTTTCCAAGGCTTGCTGAACCGAAGCTTACCATAGAGCATATGCTTCACATTGGTCCCGCTTCTGATAATGTGAAGTTATTCGATTGGATTAACTTATTGCATCTAAAGGTGTGGCGTCCAATATGCAGCTGCAATTTTTGGGTCATATGAACCTGCATTAGGTTATGAAGTGATGGGGTCTGTCCGACATCAGGGTGTCTGTTTTATTTATGTATTTGTAAAAAATGGGTAGCAATTCATTGCCCATAGTATCCATGGGAGCCAGCCTTGTAAAATTGCAGATACAATCGTGAAAGTATTTAAGCCTCATGGCAACCTTAAGTTGCAATATTAGTCTGATATCTACTTA]

[+] EMBL AK062366             [ACTTCTGCTTCTCCGAGAAGAATGTCTACAACAGCAACACCAAAATTGATGTCTGGAACTACTTCACCATCAAAAACTCGAATTGAAGGATACATGTCCATGACACCATGGTACCCCTCAAGCAAGCAATCGTCAGCAGCTAACTCACCTCCAAGGGGACGTCCCAACCCAGGTCGCACTCCTCGTATTGATGGAAAAGAATTTTTCCGTCAGGCCAGGAGCCGCCTATCATACGAACAATTTGGAGCATTCTTAGCCAACATCAAGGAACTCAATGCTCATAAGCAATCAAGAGAGGATACTCTCAAGAAGGCTGAAGAGATCTTTGGTCCAGACAACAAAGATCTTTACCTCTCTTTCCAAGGCTTGCTGAACCGAAGCTTACCATAGAGCATATGCTTCACATTGGTCCCGCTTCTGATAATGTGAAGTTATTCGATTGGATTAACTTATTGCATCTAAAGGTGTGGCGTCCAATATGCAGCTGCAATTTTTGGGTCATATGAACCTGCATTAGGTTATGAAGTGATGGGGTCTGTCCGACATCAGGGTGTCTGTTTTATTTATGTATTTGTAAAAAATGGGTAGCAATTCATTGCCCATAGTATCCATGGGAGCCAGCCTTGTAAAATTGCAGATACAATCGTGAAAGTATTTAAGCCTCATGGCAAC                                 ]
[+] EMBL CA766950             [                                                                                                                                                                      ACCCAGGTCGCACTCCTCGTATTGATGGAAAAGAATTTTTCCGTCAGGCCAGGAGCCGCCTATCATACGAACAATTTGGAGCATTCTTAGCCAACATCAAGGAACTCAATGCTCATAAGCAATCAAGAGAGGATACTCTCAAGAAGGCTGAAGAGATCTTTGATCCAGACAACAAAGATCTTTACCTCTCTTTCCAAGGCTTGCTGAACCGAAGCTTACCATAGAGCATATGCTTCACATTGGTCCCGCTTCTGATAATGTGAAGTTATTCGATTGGATTAACTTATTGCATCTAAAGGTGTGGCGTCCAATATGCAGCTGCAATTTTTGGGTCATATGAACCTGCATTAGGTTATGAAGTGATGGGGTCTGTCCGACATCAGGGTGTCTGTTTTATTTATGTATTTGTAAAAAATGGGTAGCAATTCATTGCCCATAGTATCCATGGGAGCCAGCCTTGTAAAATTGCAGATACAATCGTGAAAGTATTTAAGCCTCATGGCAACCTTAAGTTGCAATATTAGTCTGATATCTACTTA]




>consensus_4886#0
ACTTCTGCTTCTCCGAGAAGAATGTCTACAACAGCAACACCAAAATTGATGTCTGGAACT
ACTTCACCATCAAAAACTCGAATTGAAGGATACATGTCCATGACACCATGGTACCCCTCA
AGCAAGCAATCGTCAGCAGCTAACTCACCTCCAAGGGGACGTCCCAACCCAGGTCGCACT
CCTCGTATTGATGGAAAAGAATTTTTCCGTCAGGCCAGGAGCCGCCTATCATACGAACAA
TTTGGAGCATTCTTAGCCAACATCAAGGAACTCAATGCTCATAAGCAATCAAGAGAGGAT
ACTCTCAAGAAGGCTGAAGAGATCTTTGGTCCAGACAACAAAGATCTTTACCTCTCTTTC
CAAGGCTTGCTGAACCGAAGCTTACCATAGAGCATATGCTTCACATTGGTCCCGCTTCTG
ATAATGTGAAGTTATTCGATTGGATTAACTTATTGCATCTAAAGGTGTGGCGTCCAATAT
GCAGCTGCAATTTTTGGGTCATATGAACCTGCATTAGGTTATGAAGTGATGGGGTCTGTC
CGACATCAGGGTGTCTGTTTTATTTATGTATTTGTAAAAAATGGGTAGCAATTCATTGCC
CATAGTATCCATGGGAGCCAGCCTTGTAAAATTGCAGATACAATCGTGAAAGTATTTAAG
CCTCATGGCAACCTTAAGTTGCAATATTAGTCTGATATCTACTTA

consensusID : consensus_4886#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 511
fasta sequence

                              [CTTCCTTTTTGGAAAAAAAAATTTTCTGGGGGGGGGCGGTTTTTAAAAAAAATTGGGTTTTTTTTTCCCAAAAAAAGATCTTTTTTTAATAATAAAAGGGGTTTTCCTAAAGGGGGAGAAATTTTTTTCCCCAACAAAAAATTTTTTCTCTTTTTCCAAGGGGTTGTGAACAAAGTTCCAAAAAGGGATTTTCCCCCGGGGGCCCCCTTTTTAAAAGGGAGATTTTCGGGGGGGAAACCTTGGCATTAAAAAGGTGGGGGCCCAAAAGGAAAGCCCATTTTTGGGGTTATTGAACCCGCCTTAGGTTTAAAAGTGATGGGGGTTTTTCCGAAATCAGGGGGTCTGTTTAATTTANGGATTTGTAAAAAATGGGTAGCAATTCATTGCCCATAGTATCCATNGGAGCCAGCCTTGTAAAATTGCAGATACAATCGTGAAAGTATTTAAGCCTCATGGCAACCTTAAGTTGCAATATTAGTCTGATATCTACTTAATCAAAAAAAAAAAAAAA]

[-] EMBL CA761005             [CTTCCTTTTTGGAAAAAAAAATTTTCTGGGGGGGGGCGGTTTTTAAAAAAAATTGGGTTTTTTTTTCCCAAAAAAAGATCTTTTTTTAATAATAAAAGGGGTTTTCCTAAAGGGGGAGAAATTTTTTTCCCCAACAAAAAATTTTTTCTCTTTTTCCAAGGGGTTGTGAACAAAGTTCCAAAAAGGGATTTTCCCCCGGGGGCCCCCTTTTTAAAAGGGAGATTTTCGGGGGGGAAACCTTGGCATTAAAAAGGTGGGGGCCCAAAAGGAAAGCCCATTTTTGGGGTTATTGAACCCGCCTTAGGTTTAAAAGTGATGGGGGTTTTTCCGAAATCAGGGGGTCTGTTTAATTTANGGATTTGTAAAAAATGGGTAGCAATTCATTGCCCATAGTATCCATNGGAGCCAGCCTTGTAAAATTGCAGATACAATCGTGAAAGTATTTAAGCCTCATGGCAACCTTAAGTTGCAATATTAGTCTGATATCTACTTAATCAAAAAAAAAAAAAAA]




>consensus_4886#1
CTTCCTTTTTGGAAAAAAAAATTTTCTGGGGGGGGGCGGTTTTTAAAAAAAATTGGGTTT
TTTTTTCCCAAAAAAAGATCTTTTTTTAATAATAAAAGGGGTTTTCCTAAAGGGGGAGAA
ATTTTTTTCCCCAACAAAAAATTTTTTCTCTTTTTCCAAGGGGTTGTGAACAAAGTTCCA
AAAAGGGATTTTCCCCCGGGGGCCCCCTTTTTAAAAGGGAGATTTTCGGGGGGGAAACCT
TGGCATTAAAAAGGTGGGGGCCCAAAAGGAAAGCCCATTTTTGGGGTTATTGAACCCGCC
TTAGGTTTAAAAGTGATGGGGGTTTTTCCGAAATCAGGGGGTCTGTTTAATTTANGGATT
TGTAAAAAATGGGTAGCAATTCATTGCCCATAGTATCCATNGGAGCCAGCCTTGTAAAAT
TGCAGATACAATCGTGAAAGTATTTAAGCCTCATGGCAACCTTAAGTTGCAATATTAGTC
TGATATCTACTTAATCAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4886#0      ACTTCTGCTTCTCCGAGAAGAATGTCTACAACAGCAACACCAAAATTGATGTCTGGAACT 60
consensus_4886#1      ------------------------------------------------------------
                                                                                  

consensus_4886#0      ACTTCACCATCAAAAACTCGAATTGAAGGATACATGTCCATGACACCATGGTACCCCTCA 120
consensus_4886#1      ------------------------------------------------------------
                                                                                  

consensus_4886#0      AGCAAGCAATCGTCAGCAGCTAACTCACCTCCAAGGGGACGTCCCAACCCAGGTCGCACT 180
consensus_4886#1      ------------------------------------------------------------
                                                                                  

consensus_4886#0      CCTCGTATTGATGGAAAAGAATTTTTCCGTCAGGCCAGGAGCCGCCTATCATACGAACAA 240
consensus_4886#1      CTTCCTTTTTGGAAAAAAAAATTT-----TCTGGGGGGGGGCGGTTTTTAA----AAAAA 51
                      * ** * **     **** *****     ** **   ** ** *  * * *    ** **

consensus_4886#0      TTTGGAGCATTCTTAGCCAACATCAAGGAACTCAATGCTCATAAGCAATCAAGAGAGGAT 300
consensus_4886#1      ATTGGGTTTTTTTTTCCCAAAA--AAAGATCTT-----TTTTTAATAAT-AAAAGGGGTT 103
                       ****    ** **  **** *  ** ** **      *  * *  *** ** ** ** *

consensus_4886#0      ACTCTCAAGAAGGCTGAAGAGATCTTTGGTCCAGACAACAAAGATCTTTACCTCTCTTTC 360
consensus_4886#1      TTCCTAAAGGGGG----AGAAATTTTTTTCCC---CAACAAAAAATTTTTTCTCTTTTTC 156
                         ** ***  **    *** ** ***   **   ******* *  ***  **** ****

consensus_4886#0      CAAGGCTTGCTGAACCGAAGCTTACCATAGAGCATATGCTTCACATTGGTCCCGCTTCTG 420
consensus_4886#1      CAAGGGGTTGTGAAC-AAAGTT--CCAAAAAGGGATTTTCCCCCGGGGGCCCCCTTTTTA 213
                      *****  *  *****  *** *  *** * **    *    * *   ** ***  ** * 

consensus_4886#0      ATAATGTGAAGTTATTCGATTGGATTAACTTATTGCATCTAAAGGTGTGGCGTCCAATAT 480
consensus_4886#1      AAAG---GGAGATTTTCGGGGGGGAAACCTTG--GCATTAAAAAGGTGGGGGCCCAAAAG 268
                      * *    * ** * ****   **   * ***   ****  *** *   ** * **** * 

consensus_4886#0      GCAGCTGCAATTTTTGGGTCATATGAACCTGCATTAGGTTATGAAGTGATGGGG-TCTGT 539
consensus_4886#1      GAAAGCCCATTTTTGGGGTTAT-TGAACCCGCCTTAGGTTTAAAAGTGATGGGGGTTTTT 327
                      * *    ** **** **** ** ****** ** *******   *********** * * *

consensus_4886#0      CCGACATCAGGGTGTCTGTTTTATTTATGTATTTGTAAAAAATGGGTAGCAATTCATTGC 599
consensus_4886#1      CCGAAATCAGGGGGTCTGTTTAATTTANGGATTTGTAAAAAATGGGTAGCAATTCATTGC 387
                      **** ******* ******** ***** * ******************************

consensus_4886#0      CCATAGTATCCATGGGAGCCAGCCTTGTAAAATTGCAGATACAATCGTGAAAGTATTTAA 659
consensus_4886#1      CCATAGTATCCATNGGAGCCAGCCTTGTAAAATTGCAGATACAATCGTGAAAGTATTTAA 447
                      ************* **********************************************

consensus_4886#0      GCCTCATGGCAACCTTAAGTTGCAATATTAGTCTGATATCTACTTA-------------- 705
consensus_4886#1      GCCTCATGGCAACCTTAAGTTGCAATATTAGTCTGATATCTACTTAATCAAAAAAAAAAA 507
                      **********************************************              

consensus_4886#0      ----
consensus_4886#1      AAAA 511