cluster # 4892

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Oryza sativa
cluster # 4892 cluster # 4892 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4892#0 length = 467 sequences # 2

consensus_4892#1 length = 182 sequences # 1

consensusID : consensus_4892#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 467
fasta sequence

                              [CGTTGCTACAGGCTCCGCCCCAGGCGTGCCCCGCCGCCCAGCTCGGCACGCGCCGTCGGCTAGTCCGGCTACCCGGGGACGCCTCGGCCGGAGTCGGAGGCGGAGGAGGGCCCGAGCTGCGCACGTGCAAGAACTGCAAGAAGCATTACCACCCGGCGGCGAACCACCCCTCGGCGTGCCGCCACCACACCGCCCACTTCGGAGGAGAAACGAAGAGAAAATTTGAAAGTGTCTATGCGGGTGGGACTCTGGATACTCCAGATTCAGGCAAAGTGTTCCAGTATTGGCATTGTTGTGGATCGGAAGATCCTTTTGATGTTGGCTGTACTGCTTCTCCTCACTGTTCATATGATGACTGAATACCTTCTCATGTCTGCATTGTGATCCTACTATTCTTTCATATGAATACTTTTGCCTATATTGTTCATATATGTGAAACTGAAAACAGTGCATTTTTGCTGTCAAAT]

[+] EMBL CB681486             [CGTTGCTACAGGCTCCGCCCCAGGCGTGCCCCGCCGCCCAGCTCGGCACGCGCCGTCGGCTAGTCCGGCTACCCGGGGACGCCTCGGCCGGAGTCGGAGGCGGAGGAGGGCCCGAGCTGCGCACGTGCAAGAACTGCAAGAAGCATTACCACCCGGCGGCGAACCACCCCTCGGCGTGCCGCCACCACACCGCCCACTTCGGAGGAGAAACGAAGAGAAAATTTGAAAGTGTCTATGCGGGTGGGACTCTGGATACTCCAGATTCAGGCAAAGTGTTCCAGTATTGGCATTGTTGTGGATCGGAAGATCCTTTTGATGTTGGCTGTACTGCTTCTCCTCACTGTTCATATGATGACTGAATACCTTCTCATGTCTGCATTGTGATCCTACTATTCTTTCATATGAAT                                                            ]
[+] EMBL CA766936             [                                                                                                                                                                                                                                                                                                                                            TCTCCTCACTGTTCATATGATGACTGAATACCTTCTCATGTCTGCATTGTGATCCTACTATTCTTTCATATGAATACTTTTGCCTATATTGTTCATATATGTGAAACTGAAAACAGTGCATTTTTGCTGTCAAAT]




>consensus_4892#0
CGTTGCTACAGGCTCCGCCCCAGGCGTGCCCCGCCGCCCAGCTCGGCACGCGCCGTCGGC
TAGTCCGGCTACCCGGGGACGCCTCGGCCGGAGTCGGAGGCGGAGGAGGGCCCGAGCTGC
GCACGTGCAAGAACTGCAAGAAGCATTACCACCCGGCGGCGAACCACCCCTCGGCGTGCC
GCCACCACACCGCCCACTTCGGAGGAGAAACGAAGAGAAAATTTGAAAGTGTCTATGCGG
GTGGGACTCTGGATACTCCAGATTCAGGCAAAGTGTTCCAGTATTGGCATTGTTGTGGAT
CGGAAGATCCTTTTGATGTTGGCTGTACTGCTTCTCCTCACTGTTCATATGATGACTGAA
TACCTTCTCATGTCTGCATTGTGATCCTACTATTCTTTCATATGAATACTTTTGCCTATA
TTGTTCATATATGTGAAACTGAAAACAGTGCATTTTTGCTGTCAAAT

consensusID : consensus_4892#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 182
fasta sequence

                              [AGAGGACGAGACAAGGGGGTACTGCTTCTCCTCCCTGTTCATATGATGACTGAATACCTTCTCATGTTTGCATTGTGATCCTACTATTCTTTCATATGAATACTTTTGCCTATATTGTTTATATATGTGAAACTGAAAACAGTGCATTTTTGCTGTCAAATGTAAAAAAAAAAAAAAAAAAA]

[-] EMBL CA761002             [AGAGGACGAGACAAGGGGGTACTGCTTCTCCTCCCTGTTCATATGATGACTGAATACCTTCTCATGTTTGCATTGTGATCCTACTATTCTTTCATATGAATACTTTTGCCTATATTGTTTATATATGTGAAACTGAAAACAGTGCATTTTTGCTGTCAAATGTAAAAAAAAAAAAAAAAAAA]




>consensus_4892#1
AGAGGACGAGACAAGGGGGTACTGCTTCTCCTCCCTGTTCATATGATGACTGAATACCTT
CTCATGTTTGCATTGTGATCCTACTATTCTTTCATATGAATACTTTTGCCTATATTGTTT
ATATATGTGAAACTGAAAACAGTGCATTTTTGCTGTCAAATGTAAAAAAAAAAAAAAAAA
AA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4892#0      CGTTGCTACAGGCTCCGCCCCAGGCGTGCCCCGCCGCCCAGCTCGGCACGCGCCGTCGGC 60
consensus_4892#1      ------------------------------------------------------------
                                                                                  

consensus_4892#0      TAGTCCGGCTACCCGGGGACGCCTCGGCCGGAGTCGGAGGCGGAGGAGGGCCCGAGCTGC 120
consensus_4892#1      ------------------------------------------------------------
                                                                                  

consensus_4892#0      GCACGTGCAAGAACTGCAAGAAGCATTACCACCCGGCGGCGAACCACCCCTCGGCGTGCC 180
consensus_4892#1      ------------------------------------------------------------
                                                                                  

consensus_4892#0      GCCACCACACCGCCCACTTCGGAGGAGAAACGAAGAGAAAATTTGAAAGTGTCTATGCGG 240
consensus_4892#1      ------------------------------------------------------------
                                                                                  

consensus_4892#0      GTGGGACTCTGGATACTCCAGATTCAGGCAAAGTGTTCCAGTATTGGCATTGTTGTGGAT 300
consensus_4892#1      ------------------------------------------------------------
                                                                                  

consensus_4892#0      CGGAAGATCCTTTTGATGTTGGCTGTACTGCTTCTCCTCACTGTTCATATGATGACTGAA 360
consensus_4892#1      -AGAGGAC----GAGACAA-GGGGGTACTGCTTCTCCTCCCTGTTCATATGATGACTGAA 54
                        ** **       **    **  *************** ********************

consensus_4892#0      TACCTTCTCATGTCTGCATTGTGATCCTACTATTCTTTCATATGAATACTTTTGCCTATA 420
consensus_4892#1      TACCTTCTCATGTTTGCATTGTGATCCTACTATTCTTTCATATGAATACTTTTGCCTATA 114
                      ************* **********************************************

consensus_4892#0      TTGTTCATATATGTGAAACTGAAAACAGTGCATTTTTGCTGTCAAAT------------- 467
consensus_4892#1      TTGTTTATATATGTGAAACTGAAAACAGTGCATTTTTGCTGTCAAATGTAAAAAAAAAAA 174
                      ***** *****************************************             

consensus_4892#0      --------
consensus_4892#1      AAAAAAAA 182