cluster # 4900

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Oryza sativa
cluster # 4900 cluster # 4900 Sequences # 3 consensus # 1

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4900#0 length = 472 sequences # 3

consensusID : consensus_4900#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 472
fasta sequence

                              [AGGTTAAGAAAGCCAAGGGACTACCTGGAAAAAAGCTACTACCACAACAACCTCCCCATGGCGGTTGACGTCCAACGCGGACTGGGCGCTGCTCACCGGGAAGGAAGCCCCGCGGGGCACGTCGTGG-AGTACGCCAAGAACGCGACGCTGTGGAACGTGGAC-TTCGGCG-ACGCGCTGGTGAAGCTGAGCAAGCTGCCCATGCCGGCGGGGAGCAAGGGGGAGAT-CAGGGCCAAGTGCAGCGCCGTCAACGGCTACCACCATTGACGTCGACGACGATCCTTCCATCGATCGATCGATCGAACGATCTCATGGATATATGATGCAGTAGCTTTGAATTAATGTTTGACTATGATATGATCTCTGTAACTCTATTGTATTTTTTGTTCCTTCGCCCGCGTGAGTACTAGTTCAAATTCAATTCGTTGTACTGCAAACTTTTCAAAAAAATTATGATGCAAAGTAGTTCAAAAAN]

[+] EMBL C20488               [AGGTTAAGAAAGCCAAGGGACTACCTGGAAAAAAGCTACTACCACAACAACCTCCCCATGGCGGTTGACGTCCAACGCGGACTGGGCGCTGCTCACCGGGAAGGAAGCCCCGCGGGGCACGTCGTGGAAGTACGCCAAGAACGCGACGCTGTGGAACGTGGAC TTCGGCG ACGCGCTGGTGAAGCTGAGCAAGCTGCCCATGCCGGCGGGGAGCAAGGGGGAGAT CAGGGCCAAGTGCAGCGCCGTCAACGGCTACCACCATTGACGTCGACGACGATCCTTCCATCGATCGATCGATCGAACGATCTCATGGATATATGATGCAGTAGCTTTGAATTAATGTTTGACTATGATATGATCTCTGTAACTCTATTGTATTTTTTGTTCCTTCGCCCGCGTGAGTACTAGTTCAAATTCAATTCGTTGTACTGCAAACTTTTCAA                              ]
[+] EMBL AU081014             [                                                                               GACTGNGCGCTGCTCACCGGGAAGG AGGCGCGC GGGCACGTCGTGG AGTACGCCAAGAACGCGACGCTGTGGAACGTGGAC TTCGGCGAACGCGCTGGTGAAGNTGAGCAAGCTGCCNATGCCGGCGGGGAGCAAGGGGGAGATCCAGGGCCAAGTGCAGCGCCNTCAACGGCTACCACCATTGACGTCGACGACGATCCTTCCATCGATCGATCGATCGAACGATNTCATGGATATATGATGCAGTAGCTTTGAATTAATGTTTGACTATGATATGATCTCTGTAACTCTATTGTATTTTTTGTTCCTTCGCCCGCGTGAGTACTAGTTCAAATTCAATTCGTTGTACTGCAAACTTTTCAAAAA                           ]
[+] EMBL AU031932             [                                                                                                                          CGTGG AGTACGCCAAGAACGCGACGCTGTGGANCGTGGACTTTCGGCG ACGCGCTGGTGAAGCTGAGCAAGCTGCCCATGCCGGCGGGGAGCAAGGGGGAGNT CAGGGCCAAGTGCAGCGCCGTCAACGGCTACCACCATTGACGTCGACGACGATCCTTCCATCGATCGATCGATCGAACGATCTCATGGATATATGATGCAGTAGCTTTGAATTAATGTTTGACTATGATATGATCTCTGTAACTCTATTGTATTTTTTGTTCCTTCGCCCGCGTGAGTACTAGTTCAAATTCAATTCGTTGTACTGCAAACTTTTCAAAATAATTATGATGCAAAGTAGTTCAAAAAN]




>consensus_4900#0
AGGTTAAGAAAGCCAAGGGACTACCTGGAAAAAAGCTACTACCACAACAACCTCCCCATG
GCGGTTGACGTCCAACGCGGACTGGGCGCTGCTCACCGGGAAGGAAGCCCCGCGGGGCAC
GTCGTGGAGTACGCCAAGAACGCGACGCTGTGGAACGTGGACTTCGGCGACGCGCTGGTG
AAGCTGAGCAAGCTGCCCATGCCGGCGGGGAGCAAGGGGGAGATCAGGGCCAAGTGCAGC
GCCGTCAACGGCTACCACCATTGACGTCGACGACGATCCTTCCATCGATCGATCGATCGA
ACGATCTCATGGATATATGATGCAGTAGCTTTGAATTAATGTTTGACTATGATATGATCT
CTGTAACTCTATTGTATTTTTTGTTCCTTCGCCCGCGTGAGTACTAGTTCAAATTCAATT
CGTTGTACTGCAAACTTTTCAAAAAAATTATGATGCAAAGTAGTTCAAAAAN

clustalw multiple alignements is not computed in this case