These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4911#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 757 fasta sequence [ATCTTCACACAGACTGATCAAGTGATCATCAGCTAGTGCCTAGTAACCTCTCACTGACACACTCACCCAGAGTTCATCAGCTAAGTTAAGTGCAAACCGTTCGACATGGCTTCCAGCCATACCAAGCCATCCATTCTCCTCCTTGCGGCAGCGCTGCTGCTGCTATCGTGCAGCTCCATCGGCGGCGCGGCGAGGTATCTGGAGGAGGCTGCGC---CGGCGGCGGCGGCGGCGGAGGAGGAGGAGCACCCGGCACACCCCGCCGTGCCGGAGATACCAAAGCCTGAACTGCCGGAGCTGCCCAAGGTGCCTGAGCTGCCTCACCCCGTCGTGCCGGAGTTGCCGAAACCGGAGCTGCCGAAGATCCCCGAGGTGCCGCACCTCGCCGTGCCGGAGCTGCCCAAGCCGGAGGTGCCGGAGATTCCCAAGGCTGAGCTGCCGCCATTGCCCAAGTTCGAGTTGCCGCCGAAGCCAGAGTTCCACTTCCCGGAGCCGGAGGCCAAGCCATGAAAAATGACGATCAGATTACACCCCGTGCAGGCGTGTGGCAGTCAGTGATCTGAATCAAATTCGCGTGGGTGTGCGAAGTGTAGGACGTTTTGCGTGTGATCTTGTTCGTGGTGAGCCCCGGCTGGTGTGATGTGATATAGTAGGATCGTGATGTTTCAGAGTTTCGTACTCTCGTTGTTGTATTCAGAGATTCAGCTGGCTGATGGCTGATGTTGTGTACTTCCTATCCGTTCCCAAGTACTTGTCATCA] [+] EMBL AK065663 [ATCTTCACACAGACTGATCAAGTGATCATCAGCTAGTGCCTAGTAACCTCTCACTGACACACTCACCCAGAGTTCATCAGCTAAGTTAAGTGCAAACCGTTCGACATGGCTTCCAGCCATACCAAGCCATCCATTCTCCTCCTTGCGGCAGCGCTGCTGCTGCTATCGTGCAGCTCCATCGGCGGCGCGGCGAGGTATCTGGAGGAGGCTGCGC CGGCGGCGGCGGCGGCGGAGGAGGAGGAGCACCCGGCACACCCCGCCGTGCCGGAGATACCAAAGCCTGAACTGCCGGAGCTGCCCAAGGTGCCTGAGCTGCCTCACCCCGTCGTGCCGGAGTTGCCGAAACCGGAGCTGCCGAAGATCCCCGAGGTGCCGCACCTCGCCGTGCCGGAGCTGCCCAAGCCGGAGGTGCCGGAGATTCCCAAGGCTGAGCTGCCGCCATTGCCCAAGTTCGAGTTGCCGCCGAAGCCAGAGTTCCACTTCCCGGAGCCGGAGGCCAAGCCATGAAAAATGACGATCAGATTACACCCCGTGCAGGCGTGTGGCAGTCAGTGATCTGAATCAAATTCGCGTGGGTGTGCGAAGTGTAGGACGTTTTGCGTGTGATCTTGTTCGTGGTGAGCCCCGGCTGGTGTGATGTGATATAGTAGGATCGTGATGTTTCAGAGTTTCGTACTCTCGTTGTTGTATTCAGAGATTCAGCTGGCTGATGGCTGATGTTGTGTACTTCCTATCCGTTCCCAAGTACTTGTCATCA] [+] EMBL BF430568 [ GATCAAGTGATCATCAGCTAGTGCCTAGTAACCTCTCACTGACACACTCACCCAGAGTTCATCAGCTAAGTTAAGTGCAAACCATTCGACATGGCTTCCAGCCATACCAAGCCATCCATTCTCCTCCTTGCGGCAGCGCTGCTGCTGCTCTCGTGCAGCTCCATCGGCGGCGCGGCGAGGTATCTGGAGGAGGCTGCGCCGGCGGCGGCGGCGGCGGCGGAGGAGGAGGAGCACCCGGCACACCCCGCCGTGCCGGAGATACCAAAGCCTGAACTGCCGGAGCTGCCCAAGGTGCCTGAGCTGCATCACCCCGTCGTGCCGGAGTTGCCGAAACCGGAGCTGCCGAAGATCCCCGAGGTGCCGCACCTCGCCGTGCCGGAGCTGCCCAAGCCGGAGGTGCCGGAGATTCCCAAGGCTGAGCTGCCGCCATTGCCCAAGTTCGAGTTGCCGCCGAAGCCCGAGTTCCACTTCCCGGAGCCGGAGGCCAAGCCATGAAAAATGACCATCAGATTACACCCCGTGCAGGTGTGTGGCAGTCAGTGATCTGAATCAAATTCGCGTGGGTGTGTGAAGTGTTGGACGTTTTGCGTGTGATCTTGTTCGTGGTGAGCCCCGGCTGGTGTGATGTGATCGAGTAGGATCGTGATGTTTCAGAGTTTCGT ] consensusID : consensus_4911#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 609 fasta sequence [GACTGATCAAGTGATCATCAGCTAGTAACCTCTCACTGACACACTCACACAGAGTTCATCAGCTAAGTTAAGTGCAAACCATTCGACATGGCTTCCAGCCACACCAAGCCATCCATTCTCCTCCTTGCGGCAGCGTTGCTGCTGCTCTCGTGCAGCTCCATCGGCGGCGCGGCGAGGTATCTGGAGGAGGCTGCGCCGGCGGCGGCGGCGGAGGAGCACCCGGCACACCCCGCCGTGCCGGAGCTACCAAAGCCTGAACTGCCGGAGCTGCCAAAGGTGCCTGAGCTGCCTCACCCCGTCGTGCCGGAGTTGCCGAAACCGGAGCTGCCCAAGCCGGAGTTGCCGGAGATTCCCAAGTCTGAGCTGCCGCCATTGCCCAAGTTCGAGTTGCCACCGAAGCCCGAGTTCCACTTCCCGGAGCCGGAGGCCAAGCCATGAAAAATGACGATCAGATTACACCCACGTTACCAGGCGTGTGGCAGACAGTGATCTGAATCAAATCCGCGAGCGTCGGTGTGTGATCGTGTAAAGTTGGGACGTTTTGCGTGTGATCTTGTTCGTGGTGAGCCGGCTGGTGTGATGTGGATCGATAAGAACGTGATGGTTCAG] [+] EMBL CA755838 [GACTGATCAAGTGATCATCAGCTAGTAACCTCTCACTGACACACTCACACAGAGTTCATCAGCTAAGTTAAGTGCAAACCATTCGACATGGCTTCCAGCCACACCAAGCCATCCATTCTCCTCCTTGCGGCAGCGTTGCTGCTGCTCTCGTGCAGCTCCATCGGCGGCGCGGCGAGGTATCTGGAGGAGGCTGCGCCGGCGGCGGCGGCGGAGGAGCACCCGGCACACCCCGCCGTGCCGGAGCTACCAAAGCCTGAACTGCCGGAGCTGCCAAAGGTGCCTGAGCTGCCTCACCCCGTCGTGCCGGAGTTGCCGAAACCGGAGCTGCCCAAGCCGGAGTTGCCGGAGATTCCCAAGTCTGAGCTGCCGCCATTGCCCAAGTTCGAGTTGCCACCGAAGCCCGAGTTCCACTTCCCGGAGCCGGAGGCCAAGCCATGAAAAATGACGATCAGATTACACCCACGTTACCAGGCGTGTGGCAGACAGTGATCTGAATCAAATCCGCGAGCGTCGGTGTGTGATCGTGTAAAGTTGGGACGTTTTGCGTGTGATCTTGTTCGTGGTGAGCCGGCTGGTGTGATGTGGATCGATAAGAACGTGATGGTTCAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4911#0 ATCTTCACACAGACTGATCAAGTGATCATCAGCTAGTGCCTAGTAACCTCTCACTGACAC 60 consensus_4911#1 -----------GACTGATCAAGTGATCATCAGCTAGT-------AACCTCTCACTGACAC 42 ************************** **************** consensus_4911#0 ACTCACCCAGAGTTCATCAGCTAAGTTAAGTGCAAACCGTTCGACATGGCTTCCAGCCAT 120 consensus_4911#1 ACTCACACAGAGTTCATCAGCTAAGTTAAGTGCAAACCATTCGACATGGCTTCCAGCCAC 102 ****** ******************************* ******************** consensus_4911#0 ACCAAGCCATCCATTCTCCTCCTTGCGGCAGCGCTGCTGCTGCTATCGTGCAGCTCCATC 180 consensus_4911#1 ACCAAGCCATCCATTCTCCTCCTTGCGGCAGCGTTGCTGCTGCTCTCGTGCAGCTCCATC 162 ********************************* ********** *************** consensus_4911#0 GGCGGCGCGGCGAGGTATCTGGAGGAGGCTGCGCCGGCGGCGGCGGCGGCGGAGGAGGAG 240 consensus_4911#1 GGCGGCGCGGCGAGGTATCTGGAGGAGGCTGCGCCGGCGGCGGCGGCGG---------AG 213 ************************************************* ** consensus_4911#0 GAGCACCCGGCACACCCCGCCGTGCCGGAGATACCAAAGCCTGAACTGCCGGAGCTGCCC 300 consensus_4911#1 GAGCACCCGGCACACCCCGCCGTGCCGGAGCTACCAAAGCCTGAACTGCCGGAGCTGCCA 273 ****************************** **************************** consensus_4911#0 AAGGTGCCTGAGCTGCCTCACCCCGTCGTGCCGGAGTTGCCGAAACCGGAGCTGCCGAAG 360 consensus_4911#1 AAGGTGCCTGAGCTGCCTCACCCCGTCGTGCCGGAGTTGCCGAAACCGGAGCTGCC---- 329 ******************************************************** consensus_4911#0 ATCCCCGAGGTGCCGCACCTCGCCGTGCCGGAGCTGCCCAAGCCGGAGGTGCCGGAGATT 420 consensus_4911#1 --------------------------------------CAAGCCGGAGTTGCCGGAGATT 351 ********** *********** consensus_4911#0 CCCAAGGCTGAGCTGCCGCCATTGCCCAAGTTCGAGTTGCCGCCGAAGCCAGAGTTCCAC 480 consensus_4911#1 CCCAAGTCTGAGCTGCCGCCATTGCCCAAGTTCGAGTTGCCACCGAAGCCCGAGTTCCAC 411 ****** ********************************** ******** ********* consensus_4911#0 TTCCCGGAGCCGGAGGCCAAGCCATGAAAAATGACGATCAGATTACACCC-CGTG--CAG 537 consensus_4911#1 TTCCCGGAGCCGGAGGCCAAGCCATGAAAAATGACGATCAGATTACACCCACGTTACCAG 471 ************************************************** *** *** consensus_4911#0 GCGTGTGGCAGTCAGTGATCTGAATCAAATTCGCGTG----GGTGTGCGAA-GTGTA--- 589 consensus_4911#1 GCGTGTGGCAGACAGTGATCTGAATCAAATCCGCGAGCGTCGGTGTGTGATCGTGTAAAG 531 *********** ****************** **** * ****** ** ***** consensus_4911#0 ---GGACGTTTTGCGTGTGATCTTGTTCGTGGTGAGCCCCGGCTGGTGTGATGTGATATA 646 consensus_4911#1 TTGGGACGTTTTGCGTGTGATCTTGTTCGTGGTGAGCC--GGCTGGTGTGATGTGGATCG 589 *********************************** *************** consensus_4911#0 GTAGGATCGTGATGTTTCAGAGTTTCGTACTCTCGTTGTTGTATTCAGAGATTCAGCTGG 706 consensus_4911#1 ATAAGAACGTGATGGTTCAG---------------------------------------- 609 ** ** ******* ***** consensus_4911#0 CTGATGGCTGATGTTGTGTACTTCCTATCCGTTCCCAAGTACTTGTCATCA 757 consensus_4911#1 --------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||