cluster # 4911

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Oryza sativa
cluster # 4911 cluster # 4911 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4911#0 length = 757 sequences # 2

consensus_4911#1 length = 609 sequences # 1

consensusID : consensus_4911#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 757
fasta sequence

                              [ATCTTCACACAGACTGATCAAGTGATCATCAGCTAGTGCCTAGTAACCTCTCACTGACACACTCACCCAGAGTTCATCAGCTAAGTTAAGTGCAAACCGTTCGACATGGCTTCCAGCCATACCAAGCCATCCATTCTCCTCCTTGCGGCAGCGCTGCTGCTGCTATCGTGCAGCTCCATCGGCGGCGCGGCGAGGTATCTGGAGGAGGCTGCGC---CGGCGGCGGCGGCGGCGGAGGAGGAGGAGCACCCGGCACACCCCGCCGTGCCGGAGATACCAAAGCCTGAACTGCCGGAGCTGCCCAAGGTGCCTGAGCTGCCTCACCCCGTCGTGCCGGAGTTGCCGAAACCGGAGCTGCCGAAGATCCCCGAGGTGCCGCACCTCGCCGTGCCGGAGCTGCCCAAGCCGGAGGTGCCGGAGATTCCCAAGGCTGAGCTGCCGCCATTGCCCAAGTTCGAGTTGCCGCCGAAGCCAGAGTTCCACTTCCCGGAGCCGGAGGCCAAGCCATGAAAAATGACGATCAGATTACACCCCGTGCAGGCGTGTGGCAGTCAGTGATCTGAATCAAATTCGCGTGGGTGTGCGAAGTGTAGGACGTTTTGCGTGTGATCTTGTTCGTGGTGAGCCCCGGCTGGTGTGATGTGATATAGTAGGATCGTGATGTTTCAGAGTTTCGTACTCTCGTTGTTGTATTCAGAGATTCAGCTGGCTGATGGCTGATGTTGTGTACTTCCTATCCGTTCCCAAGTACTTGTCATCA]

[+] EMBL AK065663             [ATCTTCACACAGACTGATCAAGTGATCATCAGCTAGTGCCTAGTAACCTCTCACTGACACACTCACCCAGAGTTCATCAGCTAAGTTAAGTGCAAACCGTTCGACATGGCTTCCAGCCATACCAAGCCATCCATTCTCCTCCTTGCGGCAGCGCTGCTGCTGCTATCGTGCAGCTCCATCGGCGGCGCGGCGAGGTATCTGGAGGAGGCTGCGC   CGGCGGCGGCGGCGGCGGAGGAGGAGGAGCACCCGGCACACCCCGCCGTGCCGGAGATACCAAAGCCTGAACTGCCGGAGCTGCCCAAGGTGCCTGAGCTGCCTCACCCCGTCGTGCCGGAGTTGCCGAAACCGGAGCTGCCGAAGATCCCCGAGGTGCCGCACCTCGCCGTGCCGGAGCTGCCCAAGCCGGAGGTGCCGGAGATTCCCAAGGCTGAGCTGCCGCCATTGCCCAAGTTCGAGTTGCCGCCGAAGCCAGAGTTCCACTTCCCGGAGCCGGAGGCCAAGCCATGAAAAATGACGATCAGATTACACCCCGTGCAGGCGTGTGGCAGTCAGTGATCTGAATCAAATTCGCGTGGGTGTGCGAAGTGTAGGACGTTTTGCGTGTGATCTTGTTCGTGGTGAGCCCCGGCTGGTGTGATGTGATATAGTAGGATCGTGATGTTTCAGAGTTTCGTACTCTCGTTGTTGTATTCAGAGATTCAGCTGGCTGATGGCTGATGTTGTGTACTTCCTATCCGTTCCCAAGTACTTGTCATCA]
[+] EMBL BF430568             [               GATCAAGTGATCATCAGCTAGTGCCTAGTAACCTCTCACTGACACACTCACCCAGAGTTCATCAGCTAAGTTAAGTGCAAACCATTCGACATGGCTTCCAGCCATACCAAGCCATCCATTCTCCTCCTTGCGGCAGCGCTGCTGCTGCTCTCGTGCAGCTCCATCGGCGGCGCGGCGAGGTATCTGGAGGAGGCTGCGCCGGCGGCGGCGGCGGCGGCGGAGGAGGAGGAGCACCCGGCACACCCCGCCGTGCCGGAGATACCAAAGCCTGAACTGCCGGAGCTGCCCAAGGTGCCTGAGCTGCATCACCCCGTCGTGCCGGAGTTGCCGAAACCGGAGCTGCCGAAGATCCCCGAGGTGCCGCACCTCGCCGTGCCGGAGCTGCCCAAGCCGGAGGTGCCGGAGATTCCCAAGGCTGAGCTGCCGCCATTGCCCAAGTTCGAGTTGCCGCCGAAGCCCGAGTTCCACTTCCCGGAGCCGGAGGCCAAGCCATGAAAAATGACCATCAGATTACACCCCGTGCAGGTGTGTGGCAGTCAGTGATCTGAATCAAATTCGCGTGGGTGTGTGAAGTGTTGGACGTTTTGCGTGTGATCTTGTTCGTGGTGAGCCCCGGCTGGTGTGATGTGATCGAGTAGGATCGTGATGTTTCAGAGTTTCGT                                                                                   ]




>consensus_4911#0
ATCTTCACACAGACTGATCAAGTGATCATCAGCTAGTGCCTAGTAACCTCTCACTGACAC
ACTCACCCAGAGTTCATCAGCTAAGTTAAGTGCAAACCGTTCGACATGGCTTCCAGCCAT
ACCAAGCCATCCATTCTCCTCCTTGCGGCAGCGCTGCTGCTGCTATCGTGCAGCTCCATC
GGCGGCGCGGCGAGGTATCTGGAGGAGGCTGCGCCGGCGGCGGCGGCGGCGGAGGAGGAG
GAGCACCCGGCACACCCCGCCGTGCCGGAGATACCAAAGCCTGAACTGCCGGAGCTGCCC
AAGGTGCCTGAGCTGCCTCACCCCGTCGTGCCGGAGTTGCCGAAACCGGAGCTGCCGAAG
ATCCCCGAGGTGCCGCACCTCGCCGTGCCGGAGCTGCCCAAGCCGGAGGTGCCGGAGATT
CCCAAGGCTGAGCTGCCGCCATTGCCCAAGTTCGAGTTGCCGCCGAAGCCAGAGTTCCAC
TTCCCGGAGCCGGAGGCCAAGCCATGAAAAATGACGATCAGATTACACCCCGTGCAGGCG
TGTGGCAGTCAGTGATCTGAATCAAATTCGCGTGGGTGTGCGAAGTGTAGGACGTTTTGC
GTGTGATCTTGTTCGTGGTGAGCCCCGGCTGGTGTGATGTGATATAGTAGGATCGTGATG
TTTCAGAGTTTCGTACTCTCGTTGTTGTATTCAGAGATTCAGCTGGCTGATGGCTGATGT
TGTGTACTTCCTATCCGTTCCCAAGTACTTGTCATCA

consensusID : consensus_4911#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 609
fasta sequence

                              [GACTGATCAAGTGATCATCAGCTAGTAACCTCTCACTGACACACTCACACAGAGTTCATCAGCTAAGTTAAGTGCAAACCATTCGACATGGCTTCCAGCCACACCAAGCCATCCATTCTCCTCCTTGCGGCAGCGTTGCTGCTGCTCTCGTGCAGCTCCATCGGCGGCGCGGCGAGGTATCTGGAGGAGGCTGCGCCGGCGGCGGCGGCGGAGGAGCACCCGGCACACCCCGCCGTGCCGGAGCTACCAAAGCCTGAACTGCCGGAGCTGCCAAAGGTGCCTGAGCTGCCTCACCCCGTCGTGCCGGAGTTGCCGAAACCGGAGCTGCCCAAGCCGGAGTTGCCGGAGATTCCCAAGTCTGAGCTGCCGCCATTGCCCAAGTTCGAGTTGCCACCGAAGCCCGAGTTCCACTTCCCGGAGCCGGAGGCCAAGCCATGAAAAATGACGATCAGATTACACCCACGTTACCAGGCGTGTGGCAGACAGTGATCTGAATCAAATCCGCGAGCGTCGGTGTGTGATCGTGTAAAGTTGGGACGTTTTGCGTGTGATCTTGTTCGTGGTGAGCCGGCTGGTGTGATGTGGATCGATAAGAACGTGATGGTTCAG]

[+] EMBL CA755838             [GACTGATCAAGTGATCATCAGCTAGTAACCTCTCACTGACACACTCACACAGAGTTCATCAGCTAAGTTAAGTGCAAACCATTCGACATGGCTTCCAGCCACACCAAGCCATCCATTCTCCTCCTTGCGGCAGCGTTGCTGCTGCTCTCGTGCAGCTCCATCGGCGGCGCGGCGAGGTATCTGGAGGAGGCTGCGCCGGCGGCGGCGGCGGAGGAGCACCCGGCACACCCCGCCGTGCCGGAGCTACCAAAGCCTGAACTGCCGGAGCTGCCAAAGGTGCCTGAGCTGCCTCACCCCGTCGTGCCGGAGTTGCCGAAACCGGAGCTGCCCAAGCCGGAGTTGCCGGAGATTCCCAAGTCTGAGCTGCCGCCATTGCCCAAGTTCGAGTTGCCACCGAAGCCCGAGTTCCACTTCCCGGAGCCGGAGGCCAAGCCATGAAAAATGACGATCAGATTACACCCACGTTACCAGGCGTGTGGCAGACAGTGATCTGAATCAAATCCGCGAGCGTCGGTGTGTGATCGTGTAAAGTTGGGACGTTTTGCGTGTGATCTTGTTCGTGGTGAGCCGGCTGGTGTGATGTGGATCGATAAGAACGTGATGGTTCAG]




>consensus_4911#1
GACTGATCAAGTGATCATCAGCTAGTAACCTCTCACTGACACACTCACACAGAGTTCATC
AGCTAAGTTAAGTGCAAACCATTCGACATGGCTTCCAGCCACACCAAGCCATCCATTCTC
CTCCTTGCGGCAGCGTTGCTGCTGCTCTCGTGCAGCTCCATCGGCGGCGCGGCGAGGTAT
CTGGAGGAGGCTGCGCCGGCGGCGGCGGCGGAGGAGCACCCGGCACACCCCGCCGTGCCG
GAGCTACCAAAGCCTGAACTGCCGGAGCTGCCAAAGGTGCCTGAGCTGCCTCACCCCGTC
GTGCCGGAGTTGCCGAAACCGGAGCTGCCCAAGCCGGAGTTGCCGGAGATTCCCAAGTCT
GAGCTGCCGCCATTGCCCAAGTTCGAGTTGCCACCGAAGCCCGAGTTCCACTTCCCGGAG
CCGGAGGCCAAGCCATGAAAAATGACGATCAGATTACACCCACGTTACCAGGCGTGTGGC
AGACAGTGATCTGAATCAAATCCGCGAGCGTCGGTGTGTGATCGTGTAAAGTTGGGACGT
TTTGCGTGTGATCTTGTTCGTGGTGAGCCGGCTGGTGTGATGTGGATCGATAAGAACGTG
ATGGTTCAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4911#0      ATCTTCACACAGACTGATCAAGTGATCATCAGCTAGTGCCTAGTAACCTCTCACTGACAC 60
consensus_4911#1      -----------GACTGATCAAGTGATCATCAGCTAGT-------AACCTCTCACTGACAC 42
                                 **************************       ****************

consensus_4911#0      ACTCACCCAGAGTTCATCAGCTAAGTTAAGTGCAAACCGTTCGACATGGCTTCCAGCCAT 120
consensus_4911#1      ACTCACACAGAGTTCATCAGCTAAGTTAAGTGCAAACCATTCGACATGGCTTCCAGCCAC 102
                      ****** ******************************* ******************** 

consensus_4911#0      ACCAAGCCATCCATTCTCCTCCTTGCGGCAGCGCTGCTGCTGCTATCGTGCAGCTCCATC 180
consensus_4911#1      ACCAAGCCATCCATTCTCCTCCTTGCGGCAGCGTTGCTGCTGCTCTCGTGCAGCTCCATC 162
                      ********************************* ********** ***************

consensus_4911#0      GGCGGCGCGGCGAGGTATCTGGAGGAGGCTGCGCCGGCGGCGGCGGCGGCGGAGGAGGAG 240
consensus_4911#1      GGCGGCGCGGCGAGGTATCTGGAGGAGGCTGCGCCGGCGGCGGCGGCGG---------AG 213
                      *************************************************         **

consensus_4911#0      GAGCACCCGGCACACCCCGCCGTGCCGGAGATACCAAAGCCTGAACTGCCGGAGCTGCCC 300
consensus_4911#1      GAGCACCCGGCACACCCCGCCGTGCCGGAGCTACCAAAGCCTGAACTGCCGGAGCTGCCA 273
                      ****************************** **************************** 

consensus_4911#0      AAGGTGCCTGAGCTGCCTCACCCCGTCGTGCCGGAGTTGCCGAAACCGGAGCTGCCGAAG 360
consensus_4911#1      AAGGTGCCTGAGCTGCCTCACCCCGTCGTGCCGGAGTTGCCGAAACCGGAGCTGCC---- 329
                      ********************************************************    

consensus_4911#0      ATCCCCGAGGTGCCGCACCTCGCCGTGCCGGAGCTGCCCAAGCCGGAGGTGCCGGAGATT 420
consensus_4911#1      --------------------------------------CAAGCCGGAGTTGCCGGAGATT 351
                                                            ********** ***********

consensus_4911#0      CCCAAGGCTGAGCTGCCGCCATTGCCCAAGTTCGAGTTGCCGCCGAAGCCAGAGTTCCAC 480
consensus_4911#1      CCCAAGTCTGAGCTGCCGCCATTGCCCAAGTTCGAGTTGCCACCGAAGCCCGAGTTCCAC 411
                      ****** ********************************** ******** *********

consensus_4911#0      TTCCCGGAGCCGGAGGCCAAGCCATGAAAAATGACGATCAGATTACACCC-CGTG--CAG 537
consensus_4911#1      TTCCCGGAGCCGGAGGCCAAGCCATGAAAAATGACGATCAGATTACACCCACGTTACCAG 471
                      ************************************************** ***   ***

consensus_4911#0      GCGTGTGGCAGTCAGTGATCTGAATCAAATTCGCGTG----GGTGTGCGAA-GTGTA--- 589
consensus_4911#1      GCGTGTGGCAGACAGTGATCTGAATCAAATCCGCGAGCGTCGGTGTGTGATCGTGTAAAG 531
                      *********** ****************** **** *    ****** **  *****   

consensus_4911#0      ---GGACGTTTTGCGTGTGATCTTGTTCGTGGTGAGCCCCGGCTGGTGTGATGTGATATA 646
consensus_4911#1      TTGGGACGTTTTGCGTGTGATCTTGTTCGTGGTGAGCC--GGCTGGTGTGATGTGGATCG 589
                         ***********************************  ***************     

consensus_4911#0      GTAGGATCGTGATGTTTCAGAGTTTCGTACTCTCGTTGTTGTATTCAGAGATTCAGCTGG 706
consensus_4911#1      ATAAGAACGTGATGGTTCAG---------------------------------------- 609
                       ** ** ******* *****                                        

consensus_4911#0      CTGATGGCTGATGTTGTGTACTTCCTATCCGTTCCCAAGTACTTGTCATCA 757
consensus_4911#1      ---------------------------------------------------