These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4917#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 690 fasta sequence [AGCCCCCCGGCGGCGGGGCTGGCGGCGGGGGAGGGGGCGCCACCGTTGCTCCACCAGAAGCTGTGCCTCTCCATCGACATGGAGAACCGGCTGATCTATGGGTACACTGAGATAAAAGTTCAAGCTGAAAATGATACTTTTGCTCTGCATGCTGACAACATGACGATTAGGAACATATTAGTGGATGGTCAAGCTGCTGAGTTTGAGTATTCTCCTCAGTGGAAAAATGCTGGTGATCAACAGAGTTGGTCTTCAGTATCATGTTCGAAGACTGCTGCTGATGCTGCATGCTCAGTATATATCTCTTCTCTAAATAGTGAAGCTGCACCTAATCTCATCATCTCGTCAGAGAGATCAAGCAAGGCAATAACTGAGCCACAGTACGAAGAAAATGGTGAAAACCACGAAGAAAATGGTGAAAAACATGAAGAAAATGGTGAAAAACAAAATGAAAATGGTGAAAAATGTGAAGAAAATGGTGGGAAACCTGCTCAAATATCT-GATGATCAAGCTGTTAAT-GGCTGCAACGGTTCTGCTGATAAGAAGGACAAAGAAGAGGAAACTGAGAAGGACAATGAAAAAGAAAAGGAGGACAAGG-AAGAGGAAACTGAGAA-GGACAATGAAAAAGAAAAGGAGGACAAGGAAGAGGAAACTAAGAAGGACAATGAAAAAGAAAAGGAGCAGCTAATG] [+] EMBL CB633962 [AGCCCCCCGGCGGCGGGGCTGGCGGCGGGGGAGGGGGCGCCACCGTTGCTCCACCAGAAGCTGTGCCTCTCCATCGACATGGAGAACCGGCTGATCTATGGGTACACTGAGATAAAAGTTCAAGCTGAAAATGATACTTTTGCTCTGCATGCTGACAACATGACGATTAGGAACATATTAGTGGATGGTCAAGCTGCTGAGTTTGAGTATTCTCCTCAGTGGAAAAATGCTGGTGATCAACAGAGTTGGTCTTCAGTATCATGTTCGAAGACTGCTGCTGATGCTGCATGCTCAGTATATATCTCTTCTCTAAATAGTGAAGCTGCACCTAATCTCATCATCTCGTCAGAGAGATCAAGCAAGGCAATAACTGAGCCACAGTACGAAGAAAATGGTGAAAACCACGAAGAAAATGGTGAAAAACATGAAGAAAATGGTGAAAAACAAAATGAAAATGGTGAAAAATGTGAAGAAAATGGTGGGAAACCTGCTCAAATATCT GATGATCAAGCTGTTAAT GGCTGCAACGGTTCTGCTGATAAGAAGGACAAAGAAGAGGAAACTGAGAAGGACAATGAAAAAGAAAAGGAGGACAAGG AAGAGGAAACTGAGAA GGACAATGAAAAAGAAAAGGAGGACAAGGAAGAGGAAACTAAGAAGGACAATGAAAAAGAAAAGGAGCAGCTAATG] [+] EMBL AU056944 [ AGTGGATGGTCAAGCTGCTGAGTTTGAGTATTCTCCTCAGTGGAAAAATGCTGGTGATCAACAGAGTTGGTCTTCAGTATCATGTTCGAAGACTGCTGCTGATGCTGCATGCTCAGTATATATCTCTTCTCTAAATAGTGAAGCTGCACCTAATCTCATCATCTCGTCAGAGAGATCAAGCAAGGCAATAACTGAGCCACAGTACGAAGAAAATGGTGAAAACCACGAAGAAAATGGTGAAAAACATGAAGAAAATGGTGAAAAACAAAATGAAAATGGTGAAAAATGTGAAGAAAATGGTGGGAAACCTGCTCAAATATCTGGATGATCAAGCTGTTAATGGGCTGCAACGGTTCTGCTGATAAGAAGGACAAAGAAGAGGAAACTGAGAAGGACAATGAAAAAGAAAAGGAGGACAAGGAAAGAGGAAACTGAGAAGGGACAAaan ] consensusID : consensus_4917#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 634 fasta sequence [CGCGATGACGTGGCGCGCCTCGACACCACCACCTCACCTCTGAAGCCCCCCACCTCACTTCCGACCGCCTTTGGTCCCCTTCTAGAAGCTTCCAAACCCTAGAGGAGGAGGAGGAGGAGGGGTTTCGGTATGGCGAAGGCGAGGAAGCAGAAGGGCGAAGAGCAGAAGCCCGACGGCGGCGGGGCTGGCGGCGGGGGAGGGGGCTCCACCGTGCTCCACCAGAAGCTGTGCCTCTCCATCGACATGGAGAACCGGCTGATCTATGGGTGAGGCCGCGCCCCCGCTTTGCTCATGCTCGTTGCCCTACTGCGTGCCCACATTAGCTGCCTTCGTTGGGTGGTAGATTAGGTTGGTCTGGGGGGATGGTTCGAGGCGTGCGGATTACGGTCCGGGGGCTCGTGTCTGGGAGTCTGACTTGCTTCGGCTAAATTGTACCACGAATCGAGAGTTGCTAGAATCCAGTACTTGTGCGTTTCGCGGGTCTCACCCGTGAGTGCTATTCGTTCCTCCGAACTCGCTGCCTGGCCTCCCGAATTAACTTTTTTGGTACTACGTCCCACGGTTTACATGCTCAAACAACACTCTGTTGAATTCCGGCCACACCCCCCCCCACGCCCCCACTGCTCTCTGGCGA] [+] EMBL CA753579 [CGCGATGACGTGGCGCGCCTCGACACCACCACCTCACCTCTGAAGCCCCCCACCTCACTTCCGACCGCCTTTGGTCCCCTTCTAGAAGCTTCCAAACCCTAGAGGAGGAGGAGGAGGAGGGGTTTCGGTATGGCGAAGGCGAGGAAGCAGAAGGGCGAAGAGCAGAAGCCCGACGGCGGCGGGGCTGGCGGCGGGGGAGGGGGCTCCACCGTGCTCCACCAGAAGCTGTGCCTCTCCATCGACATGGAGAACCGGCTGATCTATGGGTGAGGCCGCGCCCCCGCTTTGCTCATGCTCGTTGCCCTACTGCGTGCCCACATTAGCTGCCTTCGTTGGGTGGTAGATTAGGTTGGTCTGGGGGGATGGTTCGAGGCGTGCGGATTACGGTCCGGGGGCTCGTGTCTGGGAGTCTGACTTGCTTCGGCTAAATTGTACCACGAATCGAGAGTTGCTAGAATCCAGTACTTGTGCGTTTCGCGGGTCTCACCCGTGAGTGCTATTCGTTCCTCCGAACTCGCTGCCTGGCCTCCCGAATTAACTTTTTTGGTACTACGTCCCACGGTTTACATGCTCAAACAACACTCTGTTGAATTCCGGCCACACCCCCCCCCACGCCCCCACTGCTCTCTGGCGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4917#0 AGCCCCCCGGCGGCGGGGCTGGCGGCGGGGGAGGGGGCGCCACCGTTGCTCCACCAGAAG 60 consensus_4917#1 --------------CGCGATGACGTGGCGCGCCTCGACACCACCACCTCACC-TCTGAAG 45 * * ** ** * * * * * ***** * ** * **** consensus_4917#0 CTGTGCCTCTCCATCGACATGGAGAACCGGCTGATCTATGGGTACACTGAGATAAAAGTT 120 consensus_4917#1 CCCC-CCACCTCACTTCCGACCGCCTTTGGTCCCCTTCTAGAAGCTTCCAAACCCTAGAG 104 * ** * ** * ** * * * * * * ** consensus_4917#0 CAAGCTGAAAATGATACTTTTGCTCTGCATGCTGACAACATGACGATTAGGAACATATTA 180 consensus_4917#1 GAGGAGGAGGAGGAGGGGTTT---CGGTATGGCGAAGGCGAGGAAGCAGAAGGGCGAAGA 161 * * ** * ** *** * * *** ** * * * * consensus_4917#0 GTGGATGGTCAA--GCTGCTGAGTTTGAGTATTCTCCTCAGTGGAAAAATGCTGGTGATC 238 consensus_4917#1 GCAGAAGCCCGACGGCGGCGGGGCTGGCGG-----CGGGGGAGGGGGCTCCACCGTGCTC 216 * ** * * * ** ** * * * * * * * ** *** ** consensus_4917#0 AAC--AGAGTTGGTCTTCAGTATCATGTTCGAAGACTGCTGCTGATGCTGCATGCTCAGT 296 consensus_4917#1 CACCAGAAGCTGTGCCTCTCCATCGACATGGAGAACCG--GCTGAT-CTATGGG-TGAGG 272 ** ** ** * ** *** * ** ** * ****** ** * * ** consensus_4917#0 ATATATCTCTTCTCTAAATAGTGAAGCTGCACCTAATCTCATCATCTCGTCAGAGAGATC 356 consensus_4917#1 CCGCGCCCCCGCTTTGCTCATGCTCGTTGC--CCTACTGCGTGCCCACATTAGCT-GCCT 329 * * ** * * * *** * * * * * * * ** * consensus_4917#0 AAGCAAGGCAATAACTGAGCCACAGTACGAAGAAAATGGTGAAAACCACGAAGAAAATGG 416 consensus_4917#1 TCGTTGGGTGGTAGATTAG--GTTGGTCTGGGGGGATGGTTCGAGGCGTGCGGATTACGG 387 * ** ** * ** * * * ***** * * * ** * ** consensus_4917#0 TGAAAAACATGAAGAAAATGGTGAAAAACAAAATGAAAATGGTGAAAAATGTGAAGAAAA 476 consensus_4917#1 T------CCGGGGGCTCGTGTCTGGGAGTCTGACTTGCTTCGGCTAAATTGTACCACGAA 441 * * * * ** * * * * *** *** ** consensus_4917#0 TGGTGGGAAACCTGC-TCAAATATCTGATGATCAAGCTGTTAATGGCTGCAACGGTTCTG 535 consensus_4917#1 TCGAGAGTTGCTAGAATCCAGTACTTGTGCGTTTCGCGGGTCTCACCCGTGA--GTGCTA 499 * * * * * * ** * ** ** * ** * * * * * ** ** consensus_4917#0 CTGATAAGAAGGACAAAGAAGAGGAAACTGAGAAGGACAATGAAAAAGAAAAGGAGGACA 595 consensus_4917#1 TTCGTTCCTCCGAACTCGCTGCCTGGCCTCCCGAATTAACTTTTTTGGTACTACGTCCCA 559 * * ** * * ** * * * * * ** consensus_4917#0 AGGAAGAGGAAACTGAGAAGGACAATGAAAAAGAAAAGGAGGACAAGGAAGAGGAAACTA 655 consensus_4917#1 CGGTTTACATGCTCAAACAACACTCTGTTGAATTCCGGCCACACCCCCCCCCACGCCCCC 619 ** * * * ** ** ** * ** * consensus_4917#0 AGAAGGACAATGAAAAAGAAAAGGAGCAGCTAATG 690 consensus_4917#1 ACT-GCTCTCTGGCGA------------------- 634 * * * ** * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||