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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4920#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1681 fasta sequence
[GTCAGGATCAGAATGGGGGAGCATTGCAAAGCGTCTCCCTGAGCCTGAGCTTTCAGCCCCTGGTGGTTCCAGGCCCAGGCAGACGTGTCCCAACAGTTGGTTCTTCTTCCTTGTACATGTCTCCATCGGCTTGCTCAACCCCACCAAATCCGCCGCGCCGGCCCACGGTCTCCTTGGCTGAGATAGAGATTGCAAGCGTGCTGTGTGTTGTGTGTTGTCGCTGGCATGGAGCTTGTGGCCGAACGGATAGACCACTATGTTGGCCTGTCATTGGTCACCCAAGGGCAAGGGGCAGCATGCCTTCTGCCTTTACCAACTCTCAGATGCTGCATCCCCTTTCTTTGGGCAGACTCAATGTGGACCAGTTGGTTTCTTCTCCTTTTCTTATTTATAACAGCAGTGAACCACTTCATTTTAAGTCCATCCATGACAATAGTTTTGGATAACAGTTGCAGCATTTTGGCTCAATGCGTGGTTTCACATCGTGCAGTTCGATCGATTAAAAATGCACACAATATGCTGGCAAAGAAAGAGACAGAAAGATAGGGCGTGTTTGTGTTATTTTTCTCAAGAACGATAGGAACTGTTTGCTGGAAAATGTTTTGTTAACAATCAGGGAAGGCAGGGGCATGTCGAAGATTTCAATTAAGTTGAAGTTATCCTTTTAAATATTGTGCAACTAACTACGCACTTTTGGATAGTGCAGTTCTAGTTACTCCATCTGATTCCAAAGATAGGTCGTTTTTTGGAAAAAAAAAGACAGGTCGTTTTAGCTTAAATGATTTTGTGCCCTTCAATTGTACTAGTACCATATTAAAGGGGATGGAGCATTTATTTCTGAGAGAGATAACATTTAAGAATAATAAAAAAATATGCATAGAAGTTCTAAATTAATTTTTATTTGGGAAGAACTAGCCTTAGTCTCATCGGTTGCCTATATTCCCTAAAGCCAAAAAAACTTATTAGGAAATAAAAATTAACTTATTTTTTTTATGAAGGAAGCAAATAGGTAAAACTTATTAGGAAAAATTAACTTATAGGTAAAACTTTTATATATTTGTTTGTAACAACTTAAAAGATAACGCTAAAAAGAAATTACGTTAAAAATATCTTAAAATCGTTCGGAAATTTAAATTTTGGTTTTTGTTTTGGCTTATTAGGCTAACCGATAGTGCTCTAAAACTACTTGAATTTGGAATCGGAGAGAGTGCAATGGCATACTTTGTACCTCAGGATGGTGGTGAAGAGTTTTCAGTTCAGTCGTAACACGCAATGTGCGAAAAAGCGAGATGACACCCTCTAAGTGTCAAGTGATATCCTCAATCTCTTTTGGAAACTCAAATGATATCTTCACTTTCATTTAACAATTCCATGGTACAAGAAAGGATGAGCAGATGTGCATGCTCACTCAAGTAAAGTTGCTGGAGATGAAGAAGATGAAGAAAGAGAGATCAGATCAGCTTTGGGAGTTTGATGCAACTAGCCTAGTTGGTATTGGGCCTGCCTCTTAAAACTAATCCAAGAACTAACTCCTCAACTCGCCCACGCTGCAAAATGATTCCGTCACCAAATAAAACTATATATGCGTAATGCATGCTGATCAAAGTGCCATTTGCTTTTCTTTTGTCAGGGAAGAGATTTTGTAAAATATGCAGTGATTGATTTGCCAAATCAAGACCAG]
[+] EMBL AK103907 [GTCAGGATCAGAATGGGGGAGCATTGCAAAGCGTCTCCCTGAGCCTGAGCTTTCAGCCCCTGGTGGTTCCAGGCCCAGGCAGACGTGTCCCAACAGTTGGTTCTTCTTCCTTGTACATGTCTCCATCGGCTTGCTCAACCCCACCAAATCCGCCGCGCCGGCCCACGGTCTCCTTGGCTGAGATAGAGATTGCAAGCGTGCTGTGTGTTGTGTGTTGTCGCTGGCATGGAGCTTGTGGCCGAACGGATAGACCACTATGTTGGCCTGTCATTGGTCACCCAAGGGCAAGGGGCAGCATGCCTTCTGCCTTTACCAACTCTCAGATGCTGCATCCCCTTTCTTTGGGCAGACTCAATGTGGACCAGTTGGTTTCTTCTCCTTTTCTTATTTATAACAGCAGTGAACCACTTCATTTTAAGTCCATCCATGACAATAGTTTTGGATAACAGTTGCAGCATTTTGGCTCAATGCGTGGTTTCACATCGTGCAGTTCGATCGATTAAAAATGCACACAATATGCTGGCAAAGAAAGAGACAGAAAGATAGGGCGTGTTTGTGTTATTTTTCTCAAGAACGATAGGAACTGTTTGCTGGAAAATGTTTTGTTAACAATCAGGGAAGGCAGGGGCATGTCGAAGATTTCAATTAAGTTGAAGTTATCCTTTTAAATATTGTGCAACTAACTACGCACTTTTGGATAGTGCAGTTCTAGTTACTCCATCTGATTCCAAAGATAGGTCGTTTTTTGGAAAAAAAAAGACAGGTCGTTTTAGCTTAAATGATTTTGTGCCCTTCAATTGTACTAGTACCATATTAAAGGGGATGGAGCATTTATTTCTGAGAGAGATAACATTTAAGAATAATAAAAAAATATGCATAGAAGTTCTAAATTAATTTTTATTTGGGAAGAACTAGCCTTAGTCTCATCGGTTGCCTATATTCCCTAAAGCCAAAAAAACTTATTAGGAAATAAAAATTAACTTATTTTTTTTATGAAGGAAGCAAATAGGTAAAACTTATTAGGAAAAATTAACTTATAGGTAAAACTTTTATATATTTGTTTGTAACAACTTAAAAGATAACGCTAAAAAGAAATTACGTTAAAAATATCTTAAAATCGTTCGGAAATTTAAATTTTGGTTTTTGTTTTGGCTTATTAGGCTAACCGATAGTGCTCTAAAACTACTTGAATTTGGAATCGGAGAGAGTGCAATGGCATACTTTGTACCTCAGGATGGTGGTGAAGAGTTTTCAGTTCAGTCGTAACACGCAATGTGCGAAAAAGCGAGATGACACCCTCTAAGTGTCAAGTGATATCCTCAATCTCTTTTGGAAACTCAAATGATATCTTCACTTTCATTTAACAATTCCATGGTACAAGAAAGGATGAGCAGATGTGCATGCTCACTCAAGTAAAGTTGCTGGAGATGAAGAAGATGAAGAAAGAGAGATCAGATCAGCTTTGGGAGTTTGATGCAACTAGCCTAGTTGGTATTGGGCCTGCCTCTTAAAACTAATCCAAGAACTAACTCCTCAACTCGCCCACGCTGCAAAATGATTCCGTCACCAAATAAAACTATATATGCGTAATGCATGCTGATCAAAGTGCCATTTGCTTTTCTTTTGTCAGGGAAGAGATTTTGTAAAATATGCAGTGATTGATTTGCCAAATCAAGACCAG]
consensusID : consensus_4920#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 706 fasta sequence
[TGGGGTCCCACCGGGTTTTCCCCGTTCCGACTGTGGGAAAAAGAGGGGCCCATGGGGGGGGGTAATTCCGCCTCTCTTTAAGGGGAATTGGGGGCCCGGGCCCCCCCCCCAGGGGGGGCGGGTTCATTAACCGTGTTTGAGGGGACCCAAAGGCGCCAGCCAAGGGGGAAAGGGTCGGTCCTTGAAAAGGGGTGTCTCCAGTTATAAAATGCCCACGTTTGGGGGGCACCTTGTAAGGTTGCAACCTGTCAAGGATCAAAAATGGGGGAAGCCTTCCAAAGCGGTCTCCCTGAAGCCTGAGGCTTTCAAGCCCTGGTGGTTTCAGGGCCCAGGCAAACGTTGTCCCAACAGTTGGTCTTTCTCCCTTGTACAAGTCTCCATCGGGCTGGTCAACCCCACCAAATCCGCTGCGCGGGACCACGGTCTCCTGGGGTGAGATAGAGAATGCAAGCGTGCTGTGTGTTGTGTGTTGTCGCTGGCATGGAGCTTGTGGCCGAACGGATAGACCACTATGTTGGCCTGTCATTGGTCACCCAAGGGCAAGGGGCAGCATGCCTTCTGCCTTTACCAACTGTCAGGTTCCCTGCTCTCTCTCTCTCTCTGCTTTGCTTTGGTGAGGTTATATGGCCCACGCCATCCAGCATATACTCCCAATTAAACAGTAATGCTAATGCAATGTCAAACCTTTCTTTTCAAAAAAAAAAAA]
[-] EMBL CA761925 [TGGGGTCCCACCGGGTTTTCCCCGTTCCGACTGTGGGAAAAAGAGGGGCCCATGGGGGGGGGTAATTCCGCCTCTCTTTAAGGGGAATTGGGGGCCCGGGCCCCCCCCCCAGGGGGGGCGGGTTCATTAACCGTGTTTGAGGGGACCCAAAGGCGCCAGCCAAGGGGGAAAGGGTCGGTCCTTGAAAAGGGGTGTCTCCAGTTATAAAATGCCCACGTTTGGGGGGCACCTTGTAAGGTTGCAACCTGTCAAGGATCAAAAATGGGGGAAGCCTTCCAAAGCGGTCTCCCTGAAGCCTGAGGCTTTCAAGCCCTGGTGGTTTCAGGGCCCAGGCAAACGTTGTCCCAACAGTTGGTCTTTCTCCCTTGTACAAGTCTCCATCGGGCTGGTCAACCCCACCAAATCCGCTGCGCGGGACCACGGTCTCCTGGGGTGAGATAGAGAATGCAAGCGTGCTGTGTGTTGTGTGTTGTCGCTGGCATGGAGCTTGTGGCCGAACGGATAGACCACTATGTTGGCCTGTCATTGGTCACCCAAGGGCAAGGGGCAGCATGCCTTCTGCCTTTACCAACTGTCAGGTTCCCTGCTCTCTCTCTCTCTCTGCTTTGCTTTGGTGAGGTTATATGGCCCACGCCATCCAGCATATACTCCCAATTAAACAGTAATGCTAATGCAATGTCAAACCTTTCTTTTCAAAAAAAAAAAA]
consensusID : consensus_4920#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 268 fasta sequence
[TGTGTGTTGTGTGTTGTCGCTGGCATGGAGCTTGTGGCCGAACGGATAGACCACTATGTTGGCCTGTCATTGGTCACCCAAGGGCAAGGGGCAGCATGCCTTCTGCCTTTACCAACTCTCAGGTTCCCTGCTCTCTCTCTCTCTCTGCTTTGCTTTGCTGAGTTCATATGCACAATGCAATCATGCATATACTCCCAATTAAACAGTAATGCTAATGCAATGTCAAACCTTTCTTTTCATCATCCAATTAATTATGAATTATCTTTGC]
[+] EMBL AU166014 [TGTGTGTTGTGTGTTGTCGCTGGCATGGAGCTTGTGGCCGAACGGATAGACCACTATGTTGGCCTGTCATTGGTCACCCAAGGGCAAGGGGCAGCATGCCTTCTGCCTTTACCAACTCTCAGGTTCCCTGCTCTCTCTCTCTCTCTGCTTTGCTTTGCTGAGTTCATATGCACAATGCAATCATGCATATACTCCCAATTAAACAGTAATGCTAATGCAATGTCAAACCTTTCTTTTCATCATCCAATTAATTATGAATTATCTTTGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4920#1 TGGGGTCCCACCGGGTTTTCCCCGTTCCGACTGTGGGAAAAAGAGGGGCCCATGGGGGGG 60
consensus_4920#2 ------------------------------------------------------------
consensus_4920#0 ------------------------------------------------------------
consensus_4920#1 GGTAATTCCGCCTCTCTTTAAGGGGAATTGGGGGCCCGGGCCCCCCCCCCAGGGGGGGCG 120
consensus_4920#2 ------------------------------------------------------------
consensus_4920#0 ------------------------------------------------------------
consensus_4920#1 GGTTCATTAACCGTGTTTGAGGGGACCCAAAGGCGCCAGCCAAGGGGGAAAGGGTCGGTC 180
consensus_4920#2 ------------------------------------------------------------
consensus_4920#0 ------------------------------------------------------------
consensus_4920#1 CTTGAAAAGGGGTGTCTCCAGTTATAAAATGCCCACGTTTGGGGGGCACCTTGTAAGGTT 240
consensus_4920#2 ------------------------------------------------------------
consensus_4920#0 ------------------------------------------------------------
consensus_4920#1 GCAACCTGTCAAGGATCAAAAATGGGGGAAGCCTTCCAAAGCGGTCTCCCTGAAGCCTGA 300
consensus_4920#2 ------------------------------------------------------------
consensus_4920#0 --------GTCAGGATCAGAAT--GGGGGAGCATTGCAAAGCG-TCTCCCTGA-GCCTGA 48
consensus_4920#1 GGCTTTCAAGCCCTGGTGGTTTCAGGGCCCAGGCAAACGTTGTCCCAACAGTTGGTCTTT 360
consensus_4920#2 ------------------------------------------------------------
consensus_4920#0 G-CTTTCAGCCCCTGGTGGTTCCAGG-CCCAGGCAGACGT-GTCCCAACAGTTGGTTCTT 105
consensus_4920#1 CTCCCTTGTACAAGTCTCCATCGGGCTGGTCAACCCCACCAAATCCGCTGCGCGGGACCA 420
consensus_4920#2 ------------------------------------------------------------
consensus_4920#0 CTTCCTTGTACATGTCTCCATCGGCTTGCTCAACCCCACCAAATCCGCCGCGCCGGCCCA 165
consensus_4920#1 CGGTCTCCTGGGGTGAGATAGAGAATGCAAGCGTGCTGTGTGTTGTGTGTTGTCGCTGGC 480
consensus_4920#2 ------------------------------------TGTGTGTTGTGTGTTGTCGCTGGC 24
consensus_4920#0 CGGTCTCCTTGGCTGAGATAGAGATTGCAAGCGTGCTGTGTGTTGTGTGTTGTCGCTGGC 225
************************
consensus_4920#1 ATGGAGCTTGTGGCCGAACGGATAGACCACTATGTTGGCCTGTCATTGGTCACCCAAGGG 540
consensus_4920#2 ATGGAGCTTGTGGCCGAACGGATAGACCACTATGTTGGCCTGTCATTGGTCACCCAAGGG 84
consensus_4920#0 ATGGAGCTTGTGGCCGAACGGATAGACCACTATGTTGGCCTGTCATTGGTCACCCAAGGG 285
************************************************************
consensus_4920#1 CAAGGGGCAGCATGCCTTCTGCCTTTACCAACTGTCAGGTTCCCTGCTCTCTCTCTCTCT 600
consensus_4920#2 CAAGGGGCAGCATGCCTTCTGCCTTTACCAACTCTCAGGTTCCCTGCTCTCTCTCTCTCT 144
consensus_4920#0 CAAGGGGCAGCATGCCTTCTGCCTTTACCAACTCTCAGATGCTGCATCCCCTTTCTTTGG 345
********************************* **** * * * ** *** *
consensus_4920#1 -CTGCTTTGCTTTGGTGAGGTTATATGGCCCACGCCATCCAGCATATACTCCCAATTAAA 659
consensus_4920#2 -CTGCTTTGCTTTGCTGAGTTCATATGCACAATGCAATCATGCATATACTCCCAATTAAA 203
consensus_4920#0 GCAGACTCAATGTGGACCAGTTGGTTTCTTCTCCTTTTCTTATTTATAACAGCAGTGAAC 405
* * * * ** * * ** **** ** * **
consensus_4920#1 CAGTA-ATGCTAATGCAATGTCAAACCTTTCTTTTCAAAAAAAAAAAA------------ 706
consensus_4920#2 CAGTA-ATGCTAATGCAATGTCAAACCTTTCTTTTCATCATCCAATTAATTATGAATTAT 262
consensus_4920#0 CACTTCATTTTAAGTCCATCCATGACAATAGTTTTGGATAACAGTTGCAGCATTTTGGCT 465
** * ** *** * ** ** * **** *
consensus_4920#1 ------------------------------------------------------------
consensus_4920#2 CTTTGC------------------------------------------------------ 268
consensus_4920#0 CAATGCGTGGTTTCACATCGTGCAGTTCGATCGATTAAAAATGCACACAATATGCTGGCA 525
consensus_4920#1 ------------------------------------------------------------
consensus_4920#2 ------------------------------------------------------------
consensus_4920#0 AAGAAAGAGACAGAAAGATAGGGCGTGTTTGTGTTATTTTTCTCAAGAACGATAGGAACT 585
consensus_4920#1 ------------------------------------------------------------
consensus_4920#2 ------------------------------------------------------------
consensus_4920#0 GTTTGCTGGAAAATGTTTTGTTAACAATCAGGGAAGGCAGGGGCATGTCGAAGATTTCAA 645
consensus_4920#1 ------------------------------------------------------------
consensus_4920#2 ------------------------------------------------------------
consensus_4920#0 TTAAGTTGAAGTTATCCTTTTAAATATTGTGCAACTAACTACGCACTTTTGGATAGTGCA 705
consensus_4920#1 ------------------------------------------------------------
consensus_4920#2 ------------------------------------------------------------
consensus_4920#0 GTTCTAGTTACTCCATCTGATTCCAAAGATAGGTCGTTTTTTGGAAAAAAAAAGACAGGT 765
consensus_4920#1 ------------------------------------------------------------
consensus_4920#2 ------------------------------------------------------------
consensus_4920#0 CGTTTTAGCTTAAATGATTTTGTGCCCTTCAATTGTACTAGTACCATATTAAAGGGGATG 825
consensus_4920#1 ------------------------------------------------------------
consensus_4920#2 ------------------------------------------------------------
consensus_4920#0 GAGCATTTATTTCTGAGAGAGATAACATTTAAGAATAATAAAAAAATATGCATAGAAGTT 885
consensus_4920#1 ------------------------------------------------------------
consensus_4920#2 ------------------------------------------------------------
consensus_4920#0 CTAAATTAATTTTTATTTGGGAAGAACTAGCCTTAGTCTCATCGGTTGCCTATATTCCCT 945
consensus_4920#1 ------------------------------------------------------------
consensus_4920#2 ------------------------------------------------------------
consensus_4920#0 AAAGCCAAAAAAACTTATTAGGAAATAAAAATTAACTTATTTTTTTTATGAAGGAAGCAA 1005
consensus_4920#1 ------------------------------------------------------------
consensus_4920#2 ------------------------------------------------------------
consensus_4920#0 ATAGGTAAAACTTATTAGGAAAAATTAACTTATAGGTAAAACTTTTATATATTTGTTTGT 1065
consensus_4920#1 ------------------------------------------------------------
consensus_4920#2 ------------------------------------------------------------
consensus_4920#0 AACAACTTAAAAGATAACGCTAAAAAGAAATTACGTTAAAAATATCTTAAAATCGTTCGG 1125
consensus_4920#1 ------------------------------------------------------------
consensus_4920#2 ------------------------------------------------------------
consensus_4920#0 AAATTTAAATTTTGGTTTTTGTTTTGGCTTATTAGGCTAACCGATAGTGCTCTAAAACTA 1185
consensus_4920#1 ------------------------------------------------------------
consensus_4920#2 ------------------------------------------------------------
consensus_4920#0 CTTGAATTTGGAATCGGAGAGAGTGCAATGGCATACTTTGTACCTCAGGATGGTGGTGAA 1245
consensus_4920#1 ------------------------------------------------------------
consensus_4920#2 ------------------------------------------------------------
consensus_4920#0 GAGTTTTCAGTTCAGTCGTAACACGCAATGTGCGAAAAAGCGAGATGACACCCTCTAAGT 1305
consensus_4920#1 ------------------------------------------------------------
consensus_4920#2 ------------------------------------------------------------
consensus_4920#0 GTCAAGTGATATCCTCAATCTCTTTTGGAAACTCAAATGATATCTTCACTTTCATTTAAC 1365
consensus_4920#1 ------------------------------------------------------------
consensus_4920#2 ------------------------------------------------------------
consensus_4920#0 AATTCCATGGTACAAGAAAGGATGAGCAGATGTGCATGCTCACTCAAGTAAAGTTGCTGG 1425
consensus_4920#1 ------------------------------------------------------------
consensus_4920#2 ------------------------------------------------------------
consensus_4920#0 AGATGAAGAAGATGAAGAAAGAGAGATCAGATCAGCTTTGGGAGTTTGATGCAACTAGCC 1485
consensus_4920#1 ------------------------------------------------------------
consensus_4920#2 ------------------------------------------------------------
consensus_4920#0 TAGTTGGTATTGGGCCTGCCTCTTAAAACTAATCCAAGAACTAACTCCTCAACTCGCCCA 1545
consensus_4920#1 ------------------------------------------------------------
consensus_4920#2 ------------------------------------------------------------
consensus_4920#0 CGCTGCAAAATGATTCCGTCACCAAATAAAACTATATATGCGTAATGCATGCTGATCAAA 1605
consensus_4920#1 ------------------------------------------------------------
consensus_4920#2 ------------------------------------------------------------
consensus_4920#0 GTGCCATTTGCTTTTCTTTTGTCAGGGAAGAGATTTTGTAAAATATGCAGTGATTGATTT 1665
consensus_4920#1 ----------------
consensus_4920#2 ----------------
consensus_4920#0 GCCAAATCAAGACCAG 1681
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||