These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4920#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1681 fasta sequence [GTCAGGATCAGAATGGGGGAGCATTGCAAAGCGTCTCCCTGAGCCTGAGCTTTCAGCCCCTGGTGGTTCCAGGCCCAGGCAGACGTGTCCCAACAGTTGGTTCTTCTTCCTTGTACATGTCTCCATCGGCTTGCTCAACCCCACCAAATCCGCCGCGCCGGCCCACGGTCTCCTTGGCTGAGATAGAGATTGCAAGCGTGCTGTGTGTTGTGTGTTGTCGCTGGCATGGAGCTTGTGGCCGAACGGATAGACCACTATGTTGGCCTGTCATTGGTCACCCAAGGGCAAGGGGCAGCATGCCTTCTGCCTTTACCAACTCTCAGATGCTGCATCCCCTTTCTTTGGGCAGACTCAATGTGGACCAGTTGGTTTCTTCTCCTTTTCTTATTTATAACAGCAGTGAACCACTTCATTTTAAGTCCATCCATGACAATAGTTTTGGATAACAGTTGCAGCATTTTGGCTCAATGCGTGGTTTCACATCGTGCAGTTCGATCGATTAAAAATGCACACAATATGCTGGCAAAGAAAGAGACAGAAAGATAGGGCGTGTTTGTGTTATTTTTCTCAAGAACGATAGGAACTGTTTGCTGGAAAATGTTTTGTTAACAATCAGGGAAGGCAGGGGCATGTCGAAGATTTCAATTAAGTTGAAGTTATCCTTTTAAATATTGTGCAACTAACTACGCACTTTTGGATAGTGCAGTTCTAGTTACTCCATCTGATTCCAAAGATAGGTCGTTTTTTGGAAAAAAAAAGACAGGTCGTTTTAGCTTAAATGATTTTGTGCCCTTCAATTGTACTAGTACCATATTAAAGGGGATGGAGCATTTATTTCTGAGAGAGATAACATTTAAGAATAATAAAAAAATATGCATAGAAGTTCTAAATTAATTTTTATTTGGGAAGAACTAGCCTTAGTCTCATCGGTTGCCTATATTCCCTAAAGCCAAAAAAACTTATTAGGAAATAAAAATTAACTTATTTTTTTTATGAAGGAAGCAAATAGGTAAAACTTATTAGGAAAAATTAACTTATAGGTAAAACTTTTATATATTTGTTTGTAACAACTTAAAAGATAACGCTAAAAAGAAATTACGTTAAAAATATCTTAAAATCGTTCGGAAATTTAAATTTTGGTTTTTGTTTTGGCTTATTAGGCTAACCGATAGTGCTCTAAAACTACTTGAATTTGGAATCGGAGAGAGTGCAATGGCATACTTTGTACCTCAGGATGGTGGTGAAGAGTTTTCAGTTCAGTCGTAACACGCAATGTGCGAAAAAGCGAGATGACACCCTCTAAGTGTCAAGTGATATCCTCAATCTCTTTTGGAAACTCAAATGATATCTTCACTTTCATTTAACAATTCCATGGTACAAGAAAGGATGAGCAGATGTGCATGCTCACTCAAGTAAAGTTGCTGGAGATGAAGAAGATGAAGAAAGAGAGATCAGATCAGCTTTGGGAGTTTGATGCAACTAGCCTAGTTGGTATTGGGCCTGCCTCTTAAAACTAATCCAAGAACTAACTCCTCAACTCGCCCACGCTGCAAAATGATTCCGTCACCAAATAAAACTATATATGCGTAATGCATGCTGATCAAAGTGCCATTTGCTTTTCTTTTGTCAGGGAAGAGATTTTGTAAAATATGCAGTGATTGATTTGCCAAATCAAGACCAG] [+] EMBL AK103907 [GTCAGGATCAGAATGGGGGAGCATTGCAAAGCGTCTCCCTGAGCCTGAGCTTTCAGCCCCTGGTGGTTCCAGGCCCAGGCAGACGTGTCCCAACAGTTGGTTCTTCTTCCTTGTACATGTCTCCATCGGCTTGCTCAACCCCACCAAATCCGCCGCGCCGGCCCACGGTCTCCTTGGCTGAGATAGAGATTGCAAGCGTGCTGTGTGTTGTGTGTTGTCGCTGGCATGGAGCTTGTGGCCGAACGGATAGACCACTATGTTGGCCTGTCATTGGTCACCCAAGGGCAAGGGGCAGCATGCCTTCTGCCTTTACCAACTCTCAGATGCTGCATCCCCTTTCTTTGGGCAGACTCAATGTGGACCAGTTGGTTTCTTCTCCTTTTCTTATTTATAACAGCAGTGAACCACTTCATTTTAAGTCCATCCATGACAATAGTTTTGGATAACAGTTGCAGCATTTTGGCTCAATGCGTGGTTTCACATCGTGCAGTTCGATCGATTAAAAATGCACACAATATGCTGGCAAAGAAAGAGACAGAAAGATAGGGCGTGTTTGTGTTATTTTTCTCAAGAACGATAGGAACTGTTTGCTGGAAAATGTTTTGTTAACAATCAGGGAAGGCAGGGGCATGTCGAAGATTTCAATTAAGTTGAAGTTATCCTTTTAAATATTGTGCAACTAACTACGCACTTTTGGATAGTGCAGTTCTAGTTACTCCATCTGATTCCAAAGATAGGTCGTTTTTTGGAAAAAAAAAGACAGGTCGTTTTAGCTTAAATGATTTTGTGCCCTTCAATTGTACTAGTACCATATTAAAGGGGATGGAGCATTTATTTCTGAGAGAGATAACATTTAAGAATAATAAAAAAATATGCATAGAAGTTCTAAATTAATTTTTATTTGGGAAGAACTAGCCTTAGTCTCATCGGTTGCCTATATTCCCTAAAGCCAAAAAAACTTATTAGGAAATAAAAATTAACTTATTTTTTTTATGAAGGAAGCAAATAGGTAAAACTTATTAGGAAAAATTAACTTATAGGTAAAACTTTTATATATTTGTTTGTAACAACTTAAAAGATAACGCTAAAAAGAAATTACGTTAAAAATATCTTAAAATCGTTCGGAAATTTAAATTTTGGTTTTTGTTTTGGCTTATTAGGCTAACCGATAGTGCTCTAAAACTACTTGAATTTGGAATCGGAGAGAGTGCAATGGCATACTTTGTACCTCAGGATGGTGGTGAAGAGTTTTCAGTTCAGTCGTAACACGCAATGTGCGAAAAAGCGAGATGACACCCTCTAAGTGTCAAGTGATATCCTCAATCTCTTTTGGAAACTCAAATGATATCTTCACTTTCATTTAACAATTCCATGGTACAAGAAAGGATGAGCAGATGTGCATGCTCACTCAAGTAAAGTTGCTGGAGATGAAGAAGATGAAGAAAGAGAGATCAGATCAGCTTTGGGAGTTTGATGCAACTAGCCTAGTTGGTATTGGGCCTGCCTCTTAAAACTAATCCAAGAACTAACTCCTCAACTCGCCCACGCTGCAAAATGATTCCGTCACCAAATAAAACTATATATGCGTAATGCATGCTGATCAAAGTGCCATTTGCTTTTCTTTTGTCAGGGAAGAGATTTTGTAAAATATGCAGTGATTGATTTGCCAAATCAAGACCAG] consensusID : consensus_4920#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 706 fasta sequence [TGGGGTCCCACCGGGTTTTCCCCGTTCCGACTGTGGGAAAAAGAGGGGCCCATGGGGGGGGGTAATTCCGCCTCTCTTTAAGGGGAATTGGGGGCCCGGGCCCCCCCCCCAGGGGGGGCGGGTTCATTAACCGTGTTTGAGGGGACCCAAAGGCGCCAGCCAAGGGGGAAAGGGTCGGTCCTTGAAAAGGGGTGTCTCCAGTTATAAAATGCCCACGTTTGGGGGGCACCTTGTAAGGTTGCAACCTGTCAAGGATCAAAAATGGGGGAAGCCTTCCAAAGCGGTCTCCCTGAAGCCTGAGGCTTTCAAGCCCTGGTGGTTTCAGGGCCCAGGCAAACGTTGTCCCAACAGTTGGTCTTTCTCCCTTGTACAAGTCTCCATCGGGCTGGTCAACCCCACCAAATCCGCTGCGCGGGACCACGGTCTCCTGGGGTGAGATAGAGAATGCAAGCGTGCTGTGTGTTGTGTGTTGTCGCTGGCATGGAGCTTGTGGCCGAACGGATAGACCACTATGTTGGCCTGTCATTGGTCACCCAAGGGCAAGGGGCAGCATGCCTTCTGCCTTTACCAACTGTCAGGTTCCCTGCTCTCTCTCTCTCTCTGCTTTGCTTTGGTGAGGTTATATGGCCCACGCCATCCAGCATATACTCCCAATTAAACAGTAATGCTAATGCAATGTCAAACCTTTCTTTTCAAAAAAAAAAAA] [-] EMBL CA761925 [TGGGGTCCCACCGGGTTTTCCCCGTTCCGACTGTGGGAAAAAGAGGGGCCCATGGGGGGGGGTAATTCCGCCTCTCTTTAAGGGGAATTGGGGGCCCGGGCCCCCCCCCCAGGGGGGGCGGGTTCATTAACCGTGTTTGAGGGGACCCAAAGGCGCCAGCCAAGGGGGAAAGGGTCGGTCCTTGAAAAGGGGTGTCTCCAGTTATAAAATGCCCACGTTTGGGGGGCACCTTGTAAGGTTGCAACCTGTCAAGGATCAAAAATGGGGGAAGCCTTCCAAAGCGGTCTCCCTGAAGCCTGAGGCTTTCAAGCCCTGGTGGTTTCAGGGCCCAGGCAAACGTTGTCCCAACAGTTGGTCTTTCTCCCTTGTACAAGTCTCCATCGGGCTGGTCAACCCCACCAAATCCGCTGCGCGGGACCACGGTCTCCTGGGGTGAGATAGAGAATGCAAGCGTGCTGTGTGTTGTGTGTTGTCGCTGGCATGGAGCTTGTGGCCGAACGGATAGACCACTATGTTGGCCTGTCATTGGTCACCCAAGGGCAAGGGGCAGCATGCCTTCTGCCTTTACCAACTGTCAGGTTCCCTGCTCTCTCTCTCTCTCTGCTTTGCTTTGGTGAGGTTATATGGCCCACGCCATCCAGCATATACTCCCAATTAAACAGTAATGCTAATGCAATGTCAAACCTTTCTTTTCAAAAAAAAAAAA] consensusID : consensus_4920#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 268 fasta sequence [TGTGTGTTGTGTGTTGTCGCTGGCATGGAGCTTGTGGCCGAACGGATAGACCACTATGTTGGCCTGTCATTGGTCACCCAAGGGCAAGGGGCAGCATGCCTTCTGCCTTTACCAACTCTCAGGTTCCCTGCTCTCTCTCTCTCTCTGCTTTGCTTTGCTGAGTTCATATGCACAATGCAATCATGCATATACTCCCAATTAAACAGTAATGCTAATGCAATGTCAAACCTTTCTTTTCATCATCCAATTAATTATGAATTATCTTTGC] [+] EMBL AU166014 [TGTGTGTTGTGTGTTGTCGCTGGCATGGAGCTTGTGGCCGAACGGATAGACCACTATGTTGGCCTGTCATTGGTCACCCAAGGGCAAGGGGCAGCATGCCTTCTGCCTTTACCAACTCTCAGGTTCCCTGCTCTCTCTCTCTCTCTGCTTTGCTTTGCTGAGTTCATATGCACAATGCAATCATGCATATACTCCCAATTAAACAGTAATGCTAATGCAATGTCAAACCTTTCTTTTCATCATCCAATTAATTATGAATTATCTTTGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4920#1 TGGGGTCCCACCGGGTTTTCCCCGTTCCGACTGTGGGAAAAAGAGGGGCCCATGGGGGGG 60 consensus_4920#2 ------------------------------------------------------------ consensus_4920#0 ------------------------------------------------------------ consensus_4920#1 GGTAATTCCGCCTCTCTTTAAGGGGAATTGGGGGCCCGGGCCCCCCCCCCAGGGGGGGCG 120 consensus_4920#2 ------------------------------------------------------------ consensus_4920#0 ------------------------------------------------------------ consensus_4920#1 GGTTCATTAACCGTGTTTGAGGGGACCCAAAGGCGCCAGCCAAGGGGGAAAGGGTCGGTC 180 consensus_4920#2 ------------------------------------------------------------ consensus_4920#0 ------------------------------------------------------------ consensus_4920#1 CTTGAAAAGGGGTGTCTCCAGTTATAAAATGCCCACGTTTGGGGGGCACCTTGTAAGGTT 240 consensus_4920#2 ------------------------------------------------------------ consensus_4920#0 ------------------------------------------------------------ consensus_4920#1 GCAACCTGTCAAGGATCAAAAATGGGGGAAGCCTTCCAAAGCGGTCTCCCTGAAGCCTGA 300 consensus_4920#2 ------------------------------------------------------------ consensus_4920#0 --------GTCAGGATCAGAAT--GGGGGAGCATTGCAAAGCG-TCTCCCTGA-GCCTGA 48 consensus_4920#1 GGCTTTCAAGCCCTGGTGGTTTCAGGGCCCAGGCAAACGTTGTCCCAACAGTTGGTCTTT 360 consensus_4920#2 ------------------------------------------------------------ consensus_4920#0 G-CTTTCAGCCCCTGGTGGTTCCAGG-CCCAGGCAGACGT-GTCCCAACAGTTGGTTCTT 105 consensus_4920#1 CTCCCTTGTACAAGTCTCCATCGGGCTGGTCAACCCCACCAAATCCGCTGCGCGGGACCA 420 consensus_4920#2 ------------------------------------------------------------ consensus_4920#0 CTTCCTTGTACATGTCTCCATCGGCTTGCTCAACCCCACCAAATCCGCCGCGCCGGCCCA 165 consensus_4920#1 CGGTCTCCTGGGGTGAGATAGAGAATGCAAGCGTGCTGTGTGTTGTGTGTTGTCGCTGGC 480 consensus_4920#2 ------------------------------------TGTGTGTTGTGTGTTGTCGCTGGC 24 consensus_4920#0 CGGTCTCCTTGGCTGAGATAGAGATTGCAAGCGTGCTGTGTGTTGTGTGTTGTCGCTGGC 225 ************************ consensus_4920#1 ATGGAGCTTGTGGCCGAACGGATAGACCACTATGTTGGCCTGTCATTGGTCACCCAAGGG 540 consensus_4920#2 ATGGAGCTTGTGGCCGAACGGATAGACCACTATGTTGGCCTGTCATTGGTCACCCAAGGG 84 consensus_4920#0 ATGGAGCTTGTGGCCGAACGGATAGACCACTATGTTGGCCTGTCATTGGTCACCCAAGGG 285 ************************************************************ consensus_4920#1 CAAGGGGCAGCATGCCTTCTGCCTTTACCAACTGTCAGGTTCCCTGCTCTCTCTCTCTCT 600 consensus_4920#2 CAAGGGGCAGCATGCCTTCTGCCTTTACCAACTCTCAGGTTCCCTGCTCTCTCTCTCTCT 144 consensus_4920#0 CAAGGGGCAGCATGCCTTCTGCCTTTACCAACTCTCAGATGCTGCATCCCCTTTCTTTGG 345 ********************************* **** * * * ** *** * consensus_4920#1 -CTGCTTTGCTTTGGTGAGGTTATATGGCCCACGCCATCCAGCATATACTCCCAATTAAA 659 consensus_4920#2 -CTGCTTTGCTTTGCTGAGTTCATATGCACAATGCAATCATGCATATACTCCCAATTAAA 203 consensus_4920#0 GCAGACTCAATGTGGACCAGTTGGTTTCTTCTCCTTTTCTTATTTATAACAGCAGTGAAC 405 * * * * ** * * ** **** ** * ** consensus_4920#1 CAGTA-ATGCTAATGCAATGTCAAACCTTTCTTTTCAAAAAAAAAAAA------------ 706 consensus_4920#2 CAGTA-ATGCTAATGCAATGTCAAACCTTTCTTTTCATCATCCAATTAATTATGAATTAT 262 consensus_4920#0 CACTTCATTTTAAGTCCATCCATGACAATAGTTTTGGATAACAGTTGCAGCATTTTGGCT 465 ** * ** *** * ** ** * **** * consensus_4920#1 ------------------------------------------------------------ consensus_4920#2 CTTTGC------------------------------------------------------ 268 consensus_4920#0 CAATGCGTGGTTTCACATCGTGCAGTTCGATCGATTAAAAATGCACACAATATGCTGGCA 525 consensus_4920#1 ------------------------------------------------------------ consensus_4920#2 ------------------------------------------------------------ consensus_4920#0 AAGAAAGAGACAGAAAGATAGGGCGTGTTTGTGTTATTTTTCTCAAGAACGATAGGAACT 585 consensus_4920#1 ------------------------------------------------------------ consensus_4920#2 ------------------------------------------------------------ consensus_4920#0 GTTTGCTGGAAAATGTTTTGTTAACAATCAGGGAAGGCAGGGGCATGTCGAAGATTTCAA 645 consensus_4920#1 ------------------------------------------------------------ consensus_4920#2 ------------------------------------------------------------ consensus_4920#0 TTAAGTTGAAGTTATCCTTTTAAATATTGTGCAACTAACTACGCACTTTTGGATAGTGCA 705 consensus_4920#1 ------------------------------------------------------------ consensus_4920#2 ------------------------------------------------------------ consensus_4920#0 GTTCTAGTTACTCCATCTGATTCCAAAGATAGGTCGTTTTTTGGAAAAAAAAAGACAGGT 765 consensus_4920#1 ------------------------------------------------------------ consensus_4920#2 ------------------------------------------------------------ consensus_4920#0 CGTTTTAGCTTAAATGATTTTGTGCCCTTCAATTGTACTAGTACCATATTAAAGGGGATG 825 consensus_4920#1 ------------------------------------------------------------ consensus_4920#2 ------------------------------------------------------------ consensus_4920#0 GAGCATTTATTTCTGAGAGAGATAACATTTAAGAATAATAAAAAAATATGCATAGAAGTT 885 consensus_4920#1 ------------------------------------------------------------ consensus_4920#2 ------------------------------------------------------------ consensus_4920#0 CTAAATTAATTTTTATTTGGGAAGAACTAGCCTTAGTCTCATCGGTTGCCTATATTCCCT 945 consensus_4920#1 ------------------------------------------------------------ consensus_4920#2 ------------------------------------------------------------ consensus_4920#0 AAAGCCAAAAAAACTTATTAGGAAATAAAAATTAACTTATTTTTTTTATGAAGGAAGCAA 1005 consensus_4920#1 ------------------------------------------------------------ consensus_4920#2 ------------------------------------------------------------ consensus_4920#0 ATAGGTAAAACTTATTAGGAAAAATTAACTTATAGGTAAAACTTTTATATATTTGTTTGT 1065 consensus_4920#1 ------------------------------------------------------------ consensus_4920#2 ------------------------------------------------------------ consensus_4920#0 AACAACTTAAAAGATAACGCTAAAAAGAAATTACGTTAAAAATATCTTAAAATCGTTCGG 1125 consensus_4920#1 ------------------------------------------------------------ consensus_4920#2 ------------------------------------------------------------ consensus_4920#0 AAATTTAAATTTTGGTTTTTGTTTTGGCTTATTAGGCTAACCGATAGTGCTCTAAAACTA 1185 consensus_4920#1 ------------------------------------------------------------ consensus_4920#2 ------------------------------------------------------------ consensus_4920#0 CTTGAATTTGGAATCGGAGAGAGTGCAATGGCATACTTTGTACCTCAGGATGGTGGTGAA 1245 consensus_4920#1 ------------------------------------------------------------ consensus_4920#2 ------------------------------------------------------------ consensus_4920#0 GAGTTTTCAGTTCAGTCGTAACACGCAATGTGCGAAAAAGCGAGATGACACCCTCTAAGT 1305 consensus_4920#1 ------------------------------------------------------------ consensus_4920#2 ------------------------------------------------------------ consensus_4920#0 GTCAAGTGATATCCTCAATCTCTTTTGGAAACTCAAATGATATCTTCACTTTCATTTAAC 1365 consensus_4920#1 ------------------------------------------------------------ consensus_4920#2 ------------------------------------------------------------ consensus_4920#0 AATTCCATGGTACAAGAAAGGATGAGCAGATGTGCATGCTCACTCAAGTAAAGTTGCTGG 1425 consensus_4920#1 ------------------------------------------------------------ consensus_4920#2 ------------------------------------------------------------ consensus_4920#0 AGATGAAGAAGATGAAGAAAGAGAGATCAGATCAGCTTTGGGAGTTTGATGCAACTAGCC 1485 consensus_4920#1 ------------------------------------------------------------ consensus_4920#2 ------------------------------------------------------------ consensus_4920#0 TAGTTGGTATTGGGCCTGCCTCTTAAAACTAATCCAAGAACTAACTCCTCAACTCGCCCA 1545 consensus_4920#1 ------------------------------------------------------------ consensus_4920#2 ------------------------------------------------------------ consensus_4920#0 CGCTGCAAAATGATTCCGTCACCAAATAAAACTATATATGCGTAATGCATGCTGATCAAA 1605 consensus_4920#1 ------------------------------------------------------------ consensus_4920#2 ------------------------------------------------------------ consensus_4920#0 GTGCCATTTGCTTTTCTTTTGTCAGGGAAGAGATTTTGTAAAATATGCAGTGATTGATTT 1665 consensus_4920#1 ---------------- consensus_4920#2 ---------------- consensus_4920#0 GCCAAATCAAGACCAG 1681 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||