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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4921#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 674 fasta sequence
[TTTTTTTTTTTTTTACCAAATGTTTTGGGTCGAATCGCGTTGGAAAATGCCTCACATACAACACAAGCACACAACAAAATGGTCCCAATCTTTGGTAATTTTCCAAAGTCAATCCTACCATAAATATACACCAAATAAAATCTACAACATTCAACCAAATATAATATGCATGCAATACATATAAATCTCTTAAAAGGAGTGATACTTCAAACATGGTAATAATAATTTGAATCAGTCAGATCCTAATTCATGGCAGATAACTTCATGCTCCCCTGCCAGCCAATAGCGTACAGTTGACTCGCATTGCTCTCTCTCTCGATTGATAAAATTTGGGGCCTTCACCATTAATTGGATGATTTTTTAAAAGGCATCCATTGAGAGGAGATGACAGTCACATTCTTGACTGATTCCATTAACTAATACACAA-CTGATGTGCCTATTCAGCCTTCATAACAT-CGCGTAGTTGCAAGTGCACAAAATTTTAGTAGTGG-AGAGTTGCTAACCTTGCATAAGAAAGGGCTTCTCAGCAACCTGAAATCAAGATCACTATGGGGCATTCTCCAACTTCTTGGAGGATCATCCATCTGGTAGCCTTCCTGATCATTGTTCTTGACCACGCTCTCATAATCTCAGCAGATACGGATCCACAAGATAGGAAGGGTTTTAGTCTCATT]
[+] EMBL CA760917 [TTTTTTTTTTTTTTACCAAATGTTTTGGGTCGAATCGCGTTGGAAAATGCCTCACATACAACACAAGCACACAACAAAATGGTCCCAATCTTTGGTAATTTTCCAAAGTCAATCCTACCATAAATATACACCAAATAAAATCTACAACATTCAACCAAATATAATATGCATGCAATACATATAAATCTCTTAAAAGGAGTGATACTTCAAACATGGTAATAATAATTTGAATCAGTCAGATCCTAATTCATGGCAGATAACTTCATGCTCCCCTGCCAGCCAATAGCGTACAGTTGACTCGCATTGCTCTCTCTCTCGATTGATAAAATTTGGGGCCTTCACCATTAATTGGATGATTTTTTAAAAGGCATCCATTGAGAGGAGATGACAGTCACATTCTTGACTGATTCCATTAACTAATACACAA CTGATGTGCCTATTCAGCCTTCATAACAT CGCGTAGTTGCAAGTGCACAAAATTTTAGTAGTGG AGAGTTGCTAACCTTGCATAAGAAAGGGCTTCTCAGCAACCTGAAATCAAGATCACTATGGGGCATTCTCCAACTTCTTGGAGGATCATCCATCTGGTAGCCTTCCTGATCATTGTTCTTGACCACGCTCTCATAATCTCAGCAGATACGGATCCACAAGATAGGAAGGGTTTTAGTCTCATT]
[+] EMBL CF310101 [ ttttTTGGAAAATGCCTCACATACAACACAAGCACACAACAAAATGGTCCCAATCTTTGGTAATTTTCCAAAGTCAATCCTACCATAAATATACACCAAATAAAATCTACAACATTCAACCAAATATAATATGCATGCAATACATATAAATCTCTTAAAAGGAGTGATACTTCAAACATGGTAATAATAATTTGAATCAGTCAGATCCTAATTCATGGCAGATAACTTCATGCTCCCCTGCCAGCCAATAGCGTACAGTTGACTCGCATTGCTCTCTCTCTCGCTTGATAAAATTTGGGGCCTTCACCATTAATTGGATGATTTTTTAAAAGGCATCCATTGAGAGGAGATGACAGTCACATTCTTGACTGATTCCATTAACTAATACACAANCTGATGTGCCTATTCAGCCTTCATAACATACGCGTAGTTGCAAGTGCACAAAATTTTAGTAGTGGAAGAGTTGCTAACCTTGCATAAGAAAGGGCTTCTCAGCAACCTGAAATCAAGATCACTATGGGG ]
consensusID : consensus_4921#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 575 fasta sequence
[CATGTTTTCAGGTCTTGTTTATAGCACTGGAAAGCTTAGCACGAATTTGACAAGATAGTAGCACATACAGGTACTGTAATTCTGACAATGACTGTATGTCACCTGAAAGTGATCCGGACAATCCAAAACTTGACAGCCTTCTGCAAACCATCCGAGAAAAAAGAGAGAGAGAAAATCATTAGTTGAAACATAGAGGAAACAACATGTTGATTCCACAAAGTATAAGAAAGGGCAAAGGGGAGAAAGATCATGTTGATTTGGCTAAAATGGTTCTTACATTGAGGTGACACGATTCTGGGTGCAGTACACTCCTGGCCATTTTTCGCCGCATGGATCATTACCAACCCATTCTGATAGCTTGGACTTGGCGTTATCCCAGGAAGCTGCTATGCCATTTAGGGCAGAGGCTACAAAGCGATGAGAGTGAAGAAACATCATCATGAAACAAAATCTAGTTTTTTACAGCAAATTAACCAGAAACTGGAATGAGACTGAAACACTTACTATCTTGTGGGATCTGTATCTGCTGAGATTATGAGAAGCGTGGTCAAGAACAATGATCAGGAAGACTAACA]
[+] EMBL CF310100 [CATGTTTTCAGGTCTTGTTTATAGCACTGGAAAGCTTAGCACGAATTTGACAAGATAGTAGCACATACAGGTACTGTAATTCTGACAATGACTGTATGTCACCTGAAAGTGATCCGGACAATCCAAAACTTGACAGCCTTCTGCAAACCATCCGAGAAAAAAGAGAGAGAGAAAATCATTAGTTGAAACATAGAGGAAACAACATGTTGATTCCACAAAGTATAAGAAAGGGCAAAGGGGAGAAAGATCATGTTGATTTGGCTAAAATGGTTCTTACATTGAGGTGACACGATTCTGGGTGCAGTACACTCCTGGCCATTTTTCGCCGCATGGATCATTACCAACCCATTCTGATAGCTTGGACTTGGCGTTATCCCAGGAAGCTGCTATGCCATTTAGGGCAGAGGCTACAAAGCGATGAGAGTGAAGAAACATCATCATGAAACAAAATCTAGTTTTTTACAGCAAATTAACCAGAAACTGGAATGAGACTGAAACACTTACTATCTTGTGGGATCTGTATCTGCTGAGATTATGAGAAGCGTGGTCAAGAACAATGATCAGGAAGACTAACA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4921#0 TTTTTTTTTTTTTTACCAAATGTTTTGGGTCGAATCGCGTTGGAAAATGCCTCACATACA 60
consensus_4921#1 ------------------CATGTTTT----CAGGTCTTGTTTATAGCACTGGAAAGCTTA 38
******* * ** *** * * *
consensus_4921#0 ACACAAGCACACAACAAAATGGTCCCAATCTTTGGTAATTTTCCAAAGTCAATCCTACCA 120
consensus_4921#1 GCACGA--ATTTGACAAGATAGTAGCACATACAGGTACT--------GTAATTCTGACAA 88
*** * * **** ** ** ** **** * ** * ** ** *
consensus_4921#0 TAAATATACACCAAATAAAATCTACAACATTCAACCAAATATAATATGCATGCAATACAT 180
consensus_4921#1 TGACTGTATGTCACCTGAAAGTGATCCGGACAATCCAAAACTTGACAGCCTTC--TGCAA 146
* * * ** ** * *** * * ***** * ** * * * **
consensus_4921#0 ATAAATCTCTTAAAAGGAGTGATACTTCAAACATGGTAATAATAATTTGAATCAGTCAG- 239
consensus_4921#1 ACCATCCGAGAAAAAAGAGAGAGA---GAAAATCATTAGTTGAAACATAGAGGAAACAAC 203
* * * **** *** ** * *** ** * ** * * * **
consensus_4921#0 ATCCTAATTC-ATGGCAGATAACTTCATGCTCCCCTGCCAGCCAATAGCGTACAGTTGAC 298
consensus_4921#1 ATGTTGATTCCACAAAGTATAAGAAAGGGCAAAGGGGAGAAA-GATCATGTTGATTTGGC 262
** * **** * **** ** * * ** ** * *** *
consensus_4921#0 TCGCATTGCTCTCTCTCTCGATTGATAAAATTTGGGGCCTTCACCATTAATTGGATGATT 358
consensus_4921#1 TAAAATGGTTCTTACATTGAGGTGACACGATTCTGGG--TGCAGTACACTCCTGGCCATT 320
* ** * *** * * *** * *** *** * ** * * ***
consensus_4921#0 TTTTAAAAGGCATCCATTGAGAGGAGATGACAGTCACATTCTTGACTGATTCCATTAACT 418
consensus_4921#1 TTTCGCC--GCATGGATCATTACCAACCCATTCTGATAGCTTGGACT--TGGCGTTATCC 376
*** **** ** * * * * * * * **** * * *** *
consensus_4921#0 AATACACAACTGATGTGCCTATTCAGCCTTCATAACATCGCGTAGTTGCAAGTGCACAAA 478
consensus_4921#1 --CAGGAAGCTGCTATGCC-ATTTAGGGCAGAGGCTACAAAGCGAT-GAGAGTG-AAGAA 431
* * *** * **** *** ** * * * * * **** * **
consensus_4921#0 ATTTTAGTAGTGGAGAGTTGCTAACCTTGCATAAGAAAGGGCTTCTCAGCAACCTGAAAT 538
consensus_4921#1 ACATCATCATGAAACAAAATCTAGTTTTTTACAGCAAA----------TTAACCAGAAAC 481
* * * * * * *** ** * * *** **** ****
consensus_4921#0 CAAGATCACTATGGGGCATTCTCCAACTTCTTGGAGGATCATCCATCTGGTAGCCTTCCT 598
consensus_4921#1 TGGAATGAGACTGAAACACTTACTA---TCTTGTGGGATC-TGTATCTGCTGAGATTATG 537
** * ** ** * * * ***** ***** * ***** * **
consensus_4921#0 G--ATCATTGTTCTTGACCACGCTCTCATAATCTCAGCAGATACGGATCCACAAGATAGG 656
consensus_4921#1 AGAAGCGTGGTCAAGAACAATGATCAGGAAGACT-AACA--------------------- 575
* * * ** ** * * ** * ** * **
consensus_4921#0 AAGGGTTTTAGTCTCATT 674
consensus_4921#1 ------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||