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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4926#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 2345 fasta sequence
[ACTCTTCTCAGGGCAACTTTATTAGGAAATCCAAGGGTACTAGGACATCTTCTCAAATTTGCAGAAGTGTTCCAAGCTTTTGTGCAGTTTATGTTGTCTCAAAAGGTGGTTTATCCGCAGTTTATTCTCCTGGATTTGAAGGTCACAAGAGTTCTGAGCTATTCCTGTCCAGTGATAGCTCCAAAACTGAAATCCATTCAGATGATAAGCCCTCATTATCAGATGCCACACCTTCGAGAAGCTTTAGATCAAACTTGACATGGGAGAATCTGGAAAGTTTATCATCCGCAGACCATGATAGACCGCGCTCCTTACATGAGTATCTTACTGAAAGCACTTCAGCATCTGTTGGTGATAATAACAGTAATTCTCCATGTGCTAGCGGTCAAACCCCTCGACCAAGTAGCGTGCTTATCTCAGATAAAGCTCCAATGACAAGCAGTCCCCTGCAGGAATTGATGCTTTCAGAGGACATGGATGATGTAAATAGCGAGCTTGAAAAGCTGAGGCTTGAACTTAGGCATATTAAAGGAGTGTGCAAACTTGTTCAGGATGAGTCCATCAATGCTTCTCAGCATGTGACTGACTTAGCTGCAAAACGTGCTGAAGAGGAAGCCCGGCTCAGCGAGGTCTACTCCAGGATCAACAGAGTCAATGAGCAAGCACATCAAGAGAAGGAACAACTGAACGCTTTGGAGGCTCAGTGCAGGCATGTGAGGGATCTTGCAAGAAAAGAAGCTTTGCAGAAGCAGATTTTGCAGCTGAGGACTTCGAAGGAGGCTGATAAGATGCAAAGGCTGGAAAAACTTCTTGAATTAGATGGGATGTCATACTCAACATTTACATGGGAAGACATTGAATCTGCTACATCATCGTTTTCAGAGGCACTTAAAATTGGATCAGGATCTAACGGAACAGTGTACAAGGGCAATCTACGTCAGACATCTGTTGCCATAAAAGTCCTCACTTCTGACGACAGCCACAGGATCAAACATTTCAAACAAGAGCTTGAGGTTTTGGGTAAGATCCGTCACCCACATCTGCTGCTGCTCATAGGTGCCTGTCTGGACAGACCATGCTTGGTGTACGAGTACATGGAGAATGGCAGCCTTGAGGATCGCTTGCAACTCAAAGGAGGCACGGCCCCACTCCCATGGTACCAACGTCTTCGCATTGCTTGGGAAATAGCCCTGGCCCTTGTCTACCTCCACAGCTCGAAGCCGAAGCCAATCATCCATCGTGACCTCAAGCCTGCAAACATACTCCTTGATAGCAATTTCACCAGCAAGATTGGCGATGTGGGCCTTTCAACATTGCTTCCGCTGGGGGATGCCTTGTCGACAACGCGCACAATTTTCAAGGACACAGATCTAGTTGGCACACTGTTTTACATGGACCCAGAGTACCAAAGGACAGGCCAAGTGTCAACAAAATCTGACACATACGCCTTGGGCATGGTTTTATTGCAGCTGCTCACTGGAAAGCCACCTGTGGGGCTAGCGGACCTTGTGGAGCAAGCAGTAGAAAATGGTCACCTTGTTGACATCTTGGACAAGAGTGCTGGGAAGTGGCCTGCACAAGAAGCACATGAGCTAGCGCAGCTTGGCCTAAGCTGTTTGGAAATGCGAAGCAAGCATAGACCAGATCTGAAGTGTAAGGTTCTTGTGGAGCTGGAACGGCTGAAAAAAATTGCCAGTGCTGTCTCTGACCCTGTACGGCCAGTGATATCTGGACCACCAAGCCATTTTATCTGCCCAATACTCAAGAGGATAATGCAGGACCCATGCATTGCATCTGACGGGTACTCGTACGACCGGGTCGCTATTGAGATGTGGTTGTGCGAGAATGACAAGTCACCGATTACAAAATCGCGGCTTCCTAACAAGGATTTGGTTCCCAACCATGCTCTGTTATGTGCAATTACAAGTTGGAAGGCAGAAGCAAGGGACTGATTGAGTGATTGTGCTAGGTAACTTCTCTAACTTCACATGGATACGGCACTCGAAGGCTGATGATGTACATGTTTTTGCCTTGGTGATGGCCTCCTTAATCTCTAATACTGTAGATACTGCGGTAATGTTCTTGTAAAGCAGCAGTTTTGCAGCATTTTCATAGACCATCTCTGAGATAAATTTTGAAGGGTTTAGAGTAGGAGTATCAAGAAGGTCATTTTGTAGGTTGGACCAGCAGAAAGTACAGTAGTACACTTCTACAGTATTGCTTTGTGATAGTTTATACATATACATCGAAAGGATAGGAAATTCCTCTTACTTTCTTATCTTAGTATTGTGATGACTACTCTATAAATTTAAGAGTTGAGACAAATTTCCGGCATAAAAAAAAGA]
[+] EMBL AK099675 [ACTCTTCTCAGGGCAACTTTATTAGGAAATCCAAGGGTACTAGGACATCTTCTCAAATTTGCAGAAGTGTTCCAAGCTTTTGTGCAGTTTATGTTGTCTCAAAAGGTGGTTTATCCGCAGTTTATTCTCCTGGATTTGAAGGTCACAAGAGTTCTGAGCTATTCCTGTCCAGTGATAGCTCCAAAACTGAAATCCATTCAGATGATAAGCCCTCATTATCAGATGCCACACCTTCGAGAAGCTTTAGATCAAACTTGACATGGGAGAATCTGGAAAGTTTATCATCCGCAGACCATGATAGACCGCGCTCCTTACATGAGTATCTTACTGAAAGCACTTCAGCATCTGTTGGTGATAATAACAGTAATTCTCCATGTGCTAGCGGTCAAACCCCTCGACCAAGTAGCGTGCTTATCTCAGATAAAGCTCCAATGACAAGCAGTCCCCTGCAGGAATTGATGCTTTCAGAGGACATGGATGATGTAAATAGCGAGCTTGAAAAGCTGAGGCTTGAACTTAGGCATATTAAAGGAGTGTGCAAACTTGTTCAGGATGAGTCCATCAATGCTTCTCAGCATGTGACTGACTTAGCTGCAAAACGTGCTGAAGAGGAAGCCCGGCTCAGCGAGGTCTACTCCAGGATCAACAGAGTCAATGAGCAAGCACATCAAGAGAAGGAACAACTGAACGCTTTGGAGGCTCAGTGCAGGCATGTGAGGGATCTTGCAAGAAAAGAAGCTTTGCAGAAGCAGATTTTGCAGCTGAGGACTTCGAAGGAGGCTGATAAGATGCAAAGGCTGGAAAAACTTCTTGAATTAGATGGGATGTCATACTCAACATTTACATGGGAAGACATTGAATCTGCTACATCATCGTTTTCAGAGGCACTTAAAATTGGATCAGGATCTAACGGAACAGTGTACAAGGGCAATCTACGTCAGACATCTGTTGCCATAAAAGTCCTCACTTCTGACGACAGCCACAGGATCAAACATTTCAAACAAGAGCTTGAGGTTTTGGGTAAGATCCGTCACCCACATCTGCTGCTGCTCATAGGTGCCTGTCTGGACAGACCATGCTTGGTGTACGAGTACATGGAGAATGGCAGCCTTGAGGATCGCTTGCAACTCAAAGGAGGCACGGCCCCACTCCCATGGTACCAACGTCTTCGCATTGCTTGGGAAATAGCCCTGGCCCTTGTCTACCTCCACAGCTCGAAGCCGAAGCCAATCATCCATCGTGACCTCAAGCCTGCAAACATACTCCTTGATAGCAATTTCACCAGCAAGATTGGCGATGTGGGCCTTTCAACATTGCTTCCGCTGGGGGATGCCTTGTCGACAACGCGCACAATTTTCAAGGACACAGATCTAGTTGGCACACTGTTTTACATGGACCCAGAGTACCAAAGGACAGGCCAAGTGTCAACAAAATCTGACACATACGCCTTGGGCATGGTTTTATTGCAGCTGCTCACTGGAAAGCCACCTGTGGGGCTAGCGGACCTTGTGGAGCAAGCAGTAGAAAATGGTCACCTTGTTGACATCTTGGACAAGAGTGCTGGGAAGTGGCCTGCACAAGAAGCACATGAGCTAGCGCAGCTTGGCCTAAGCTGTTTGGAAATGCGAAGCAAGCATAGACCAGATCTGAAGTGTAAGGTTCTTGTGGAGCTGGAACGGCTGAAAAAAATTGCCAGTGCTGTCTCTGACCCTGTACGGCCAGTGATATCTGGACCACCAAGCCATTTTATCTGCCCAATACTCAAGAGGATAATGCAGGACCCATGCATTGCATCTGACGGGTACTCGTACGACCGGGTCGCTATTGAGATGTGGTTGTGCGAGAATGACAAGTCACCGATTACAAAATCGCGGCTTCCTAACAAGGATTTGGTTCCCAACCATGCTCTGTTATGTGCAATTACAAGTTGGAAGGCAGAAGCAAGGGACTGATTGAGTGATTGTGCTAGGTAACTTCTCTAACTTCACATGGATACGGCACTCGAAGGCTGATGATGTACATGTTTTTGCCTTGGTGATGGCCTCCTTAATCTCTAATACTGTAGATACTGCGGTAATGTTCTTGTAAAGCAGCAGTTTTGCAGCATTTTCATAGACCATCTCTGAGATAAATTTTGAAGGGTTTAGAGTAGGAGTATCAAGAAGGTCATTTTGTAGGTTGGACCAGCAGAAAGTACAGTAGTACACTTCTACAGTATTGCTTTGTGATAGTTTATACATATACATCGAAAGGATAGGAAATTCCTCTTACTTTCTTATCTTAGTATTGTGATGACTACTCTATAAATTTAAGAGTTGAGACAA ]
[-] EMBL CB672905 [ ACCTTGTGGAGCAAGCAGTAGAAAATGGTCACCTTGTTGACATCTTGGACAAGAGTGCTGGGAAGTGGCCTGCACAAGAAGCACATGAGCTAGCGCAGCTTGGCCTAAGCTGTTTGGAAATGCGAAGCAAGCATAGACCAGATCTGAAGTGTAAGGTTCTTGTGGAGCTGGAACGGCTGAAAAAAATTGCCAGTGCTGTCTCTGACCCTGTACGGCCAGTGATATCTGGACCACCAAGCCATTTTATCTGCCCAATACTCAAGAGGATAATGCAGGACCCATGCATTGCATCTGACGGGTACTCGTACGACCGGGTCGCTATTGAGATGTGGTTGTGCGAGAATGACAAGTCACCGATTACAAAATCGCGGCTTCCTAACAAGGATTTGGTTCCCAACCATGCTCTGTTATGTGCAATTACAAGTTGGAAGGCAGAAGCAAGGGACTGATTGAGTGATTGTGCTAGGTAACTTCTCTAACTTCACATGGATACGGCACTCGAAGGCTGATGATGTACATGTTTTTGCCTTGGTGATGGCCTCCTTAATCTCTAATACTGTAGATACTGCGGTAATGTTCTTGTAAAGCAGCAGTTTTGCAGCATTTTCATAGACCATCTCTGAGATAAATTTTGAAGGGTTTAGAGTAGGAGTATCAAGAAGGTCATTTTGTAGGTTGGACCAGCAGAAAGTACAGTAGTACACTTCTACAGTATTGCTTTGTGATAGTTTATACATATACATCGAAAGGATAGGAAATTCCTCTTACTTTCTTATCTTAGTATTGTGATGACTACTCTAGAAATTTAAGAGTTGAGACAAATTTCCGGCATAAAAAAAAGA]
consensusID : consensus_4926#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 410 fasta sequence
[GGAAATGGTCNCTTGTTGACATNTTGGACAAGANTGCTGGGAAGTGGCCTGCACAAGAAGCACATGGAGTAGCGCAGCTTGGCCTAAGCTGTTTGGANCCCCCGAAGCAAGCATAGACCAGATCTGAAGTGTAAGGTTCTTGTGGAGCTGGAACGGCTGAAAAAAANCCCCCGTGCTGTCTCTGACCCTGTACGGCCAGTGATATCTGGACCACCAAGCCATTTTATCTGCCCAATACTCAAGGTATTTTTTGGCTTATTGCAATACATCAGCTTTAAGTGAATTACATCACAACTACCTGTAGCTCATTGTCTTGTAAGAATGTTTCTGTTTCAGAATTTGAACTATATTACACTTCAAGGTGGTCTGTAATTCAACTTTTTACTCTTAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU029791 [GGAAATGGTCNCTTGTTGACATNTTGGACAAGANTGCTGGGAAGTGGCCTGCACAAGAAGCACATGGAGTAGCGCAGCTTGGCCTAAGCTGTTTGGANCCCCCGAAGCAAGCATAGACCAGATCTGAAGTGTAAGGTTCTTGTGGAGCTGGAACGGCTGAAAAAAANCCCCCGTGCTGTCTCTGACCCTGTACGGCCAGTGATATCTGGACCACCAAGCCATTTTATCTGCCCAATACTCAAGGTATTTTTTGGCTTATTGCAATACATCAGCTTTAAGTGAATTACATCACAACTACCTGTAGCTCATTGTCTTGTAAGAATGTTTCTGTTTCAGAATTTGAACTATATTACACTTCAAGGTGGTCTGTAATTCAACTTTTTACTCTTAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4926#0 ACTCTTCTCAGGGCAACTTTATTAGGAAATCCAAGGGTACTAGGACATCTTCTCAAATTT 60
consensus_4926#1 ------------------------------------------------------------
consensus_4926#0 GCAGAAGTGTTCCAAGCTTTTGTGCAGTTTATGTTGTCTCAAAAGGTGGTTTATCCGCAG 120
consensus_4926#1 ------------------------------------------------------------
consensus_4926#0 TTTATTCTCCTGGATTTGAAGGTCACAAGAGTTCTGAGCTATTCCTGTCCAGTGATAGCT 180
consensus_4926#1 ------------------------------------------------------------
consensus_4926#0 CCAAAACTGAAATCCATTCAGATGATAAGCCCTCATTATCAGATGCCACACCTTCGAGAA 240
consensus_4926#1 ------------------------------------------------------------
consensus_4926#0 GCTTTAGATCAAACTTGACATGGGAGAATCTGGAAAGTTTATCATCCGCAGACCATGATA 300
consensus_4926#1 ------------------------------------------------------------
consensus_4926#0 GACCGCGCTCCTTACATGAGTATCTTACTGAAAGCACTTCAGCATCTGTTGGTGATAATA 360
consensus_4926#1 ------------------------------------------------------------
consensus_4926#0 ACAGTAATTCTCCATGTGCTAGCGGTCAAACCCCTCGACCAAGTAGCGTGCTTATCTCAG 420
consensus_4926#1 ------------------------------------------------------------
consensus_4926#0 ATAAAGCTCCAATGACAAGCAGTCCCCTGCAGGAATTGATGCTTTCAGAGGACATGGATG 480
consensus_4926#1 ------------------------------------------------------------
consensus_4926#0 ATGTAAATAGCGAGCTTGAAAAGCTGAGGCTTGAACTTAGGCATATTAAAGGAGTGTGCA 540
consensus_4926#1 ------------------------------------------------------------
consensus_4926#0 AACTTGTTCAGGATGAGTCCATCAATGCTTCTCAGCATGTGACTGACTTAGCTGCAAAAC 600
consensus_4926#1 ------------------------------------------------------------
consensus_4926#0 GTGCTGAAGAGGAAGCCCGGCTCAGCGAGGTCTACTCCAGGATCAACAGAGTCAATGAGC 660
consensus_4926#1 ------------------------------------------------------------
consensus_4926#0 AAGCACATCAAGAGAAGGAACAACTGAACGCTTTGGAGGCTCAGTGCAGGCATGTGAGGG 720
consensus_4926#1 ------------------------------------------------------------
consensus_4926#0 ATCTTGCAAGAAAAGAAGCTTTGCAGAAGCAGATTTTGCAGCTGAGGACTTCGAAGGAGG 780
consensus_4926#1 ------------------------------------------------------------
consensus_4926#0 CTGATAAGATGCAAAGGCTGGAAAAACTTCTTGAATTAGATGGGATGTCATACTCAACAT 840
consensus_4926#1 ------------------------------------------------------------
consensus_4926#0 TTACATGGGAAGACATTGAATCTGCTACATCATCGTTTTCAGAGGCACTTAAAATTGGAT 900
consensus_4926#1 ------------------------------------------------------------
consensus_4926#0 CAGGATCTAACGGAACAGTGTACAAGGGCAATCTACGTCAGACATCTGTTGCCATAAAAG 960
consensus_4926#1 ------------------------------------------------------------
consensus_4926#0 TCCTCACTTCTGACGACAGCCACAGGATCAAACATTTCAAACAAGAGCTTGAGGTTTTGG 1020
consensus_4926#1 ------------------------------------------------------------
consensus_4926#0 GTAAGATCCGTCACCCACATCTGCTGCTGCTCATAGGTGCCTGTCTGGACAGACCATGCT 1080
consensus_4926#1 ------------------------------------------------------------
consensus_4926#0 TGGTGTACGAGTACATGGAGAATGGCAGCCTTGAGGATCGCTTGCAACTCAAAGGAGGCA 1140
consensus_4926#1 ------------------------------------------------------------
consensus_4926#0 CGGCCCCACTCCCATGGTACCAACGTCTTCGCATTGCTTGGGAAATAGCCCTGGCCCTTG 1200
consensus_4926#1 ------------------------------------------------------------
consensus_4926#0 TCTACCTCCACAGCTCGAAGCCGAAGCCAATCATCCATCGTGACCTCAAGCCTGCAAACA 1260
consensus_4926#1 ------------------------------------------------------------
consensus_4926#0 TACTCCTTGATAGCAATTTCACCAGCAAGATTGGCGATGTGGGCCTTTCAACATTGCTTC 1320
consensus_4926#1 ------------------------------------------------------------
consensus_4926#0 CGCTGGGGGATGCCTTGTCGACAACGCGCACAATTTTCAAGGACACAGATCTAGTTGGCA 1380
consensus_4926#1 ------------------------------------------------------------
consensus_4926#0 CACTGTTTTACATGGACCCAGAGTACCAAAGGACAGGCCAAGTGTCAACAAAATCTGACA 1440
consensus_4926#1 ------------------------------------------------------------
consensus_4926#0 CATACGCCTTGGGCATGGTTTTATTGCAGCTGCTCACTGGAAAGCCACCTGTGGGGCTAG 1500
consensus_4926#1 ------------------------------------------------------------
consensus_4926#0 CGGACCTTGTGGAGCAAGCAGTAGAAAATGGTCACCTTGTTGACATCTTGGACAAGAGTG 1560
consensus_4926#1 -----------------------GGAAATGGTCNC-TTGTTGACATNTTGGACAAGANTG 36
* ******** * ********** ********** **
consensus_4926#0 CTGGGAAGTGGCCTGCACAAGAAGCACATGAGCTAGCGCAGCTTGGCCTAAGCTGTTTGG 1620
consensus_4926#1 CTGGGAAGTGGCCTGCACAAGAAGCACATGGAGTAGCGCAGCTTGGCCTAAGCTGTTTGG 96
****************************** ***************************
consensus_4926#0 AAATGC-GAAGCAAGCATAGACCAGATCTGAAGTGTAAGGTTCTTGTGGAGCTGGAACGG 1679
consensus_4926#1 ANCCCCCGAAGCAAGCATAGACCAGATCTGAAGTGTAAGGTTCTTGTGGAGCTGGAACGG 156
* * *****************************************************
consensus_4926#0 CTGAAAAAAATTGCCAGTGCTGTCTCTGACCCTGTACGGCCAGTGATATCTGGACCACCA 1739
consensus_4926#1 CTGAAAAAAANCCCCCGTGCTGTCTCTGACCCTGTACGGCCAGTGATATCTGGACCACCA 216
********** ** ********************************************
consensus_4926#0 AGCCATTTTATCTGCCCAATACTCAAGAGGATAATGCAGGACCCATGCATTGCATCTGAC 1799
consensus_4926#1 AGCCATTTTATCTGCCCAATACTCAAGGTATT--TTTTGGCTTATTGCAATACATCAGCT 274
*************************** * * ** **** * **** *
consensus_4926#0 GGGTACTCGTACGACCGGGTCGCTATTGAGATGTGGTTGTGCGAGAATGACAAGTCACCG 1859
consensus_4926#1 T--TAAGTGAATTACATCACAACTACCTGTAGCTCATTGTCTTGTAAGAAT--GTTTCTG 330
** * * ** *** * * **** ** * ** * *
consensus_4926#0 ATTACAAAATCGCGGCTTCCTA-ACAAGGATTTGGTTCCCAACCATGCTCTGTTATGTGC 1918
consensus_4926#1 TTTCAGAATTTGAACTATATTACACTTCAAGGTGGTCTGTAATTCAACTTT-TTACTCTT 389
** ** * * * ** ** * **** ** ** * ***
consensus_4926#0 AATTACAAGTTGGAAGGCAGAAGCAAGGGACTGATTGAGTGATTGTGCTAGGTAACTTCT 1978
consensus_4926#1 AAAAAAAAAAAAAAAAAAAAA--------------------------------------- 410
** * ** ** * *
consensus_4926#0 CTAACTTCACATGGATACGGCACTCGAAGGCTGATGATGTACATGTTTTTGCCTTGGTGA 2038
consensus_4926#1 ------------------------------------------------------------
consensus_4926#0 TGGCCTCCTTAATCTCTAATACTGTAGATACTGCGGTAATGTTCTTGTAAAGCAGCAGTT 2098
consensus_4926#1 ------------------------------------------------------------
consensus_4926#0 TTGCAGCATTTTCATAGACCATCTCTGAGATAAATTTTGAAGGGTTTAGAGTAGGAGTAT 2158
consensus_4926#1 ------------------------------------------------------------
consensus_4926#0 CAAGAAGGTCATTTTGTAGGTTGGACCAGCAGAAAGTACAGTAGTACACTTCTACAGTAT 2218
consensus_4926#1 ------------------------------------------------------------
consensus_4926#0 TGCTTTGTGATAGTTTATACATATACATCGAAAGGATAGGAAATTCCTCTTACTTTCTTA 2278
consensus_4926#1 ------------------------------------------------------------
consensus_4926#0 TCTTAGTATTGTGATGACTACTCTATAAATTTAAGAGTTGAGACAAATTTCCGGCATAAA 2338
consensus_4926#1 ------------------------------------------------------------
consensus_4926#0 AAAAAGA 2345
consensus_4926#1 -------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||