cluster # 4930

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Oryza sativa
cluster # 4930 cluster # 4930 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4930#0 length = 1617 sequences # 2

consensus_4930#1 length = 297 sequences # 1

consensusID : consensus_4930#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1617
fasta sequence

                              [TCCACAGATCCACTACTCAACGACAACAATGCTCCTTCGATCTGGGCGGCGCCTCGCCGCCGGCGGCAGCCGGCGGCGGCGGCGGCGCACCCCGAGGCTCTCCTCCCGGCGGAGGTTCCCCTCTCAACTCGTCTCGCCGCTCCTCTCGTCGACCCCGTCCGAGCGGGAGCAGCCCCACCTCCTCTCCGGGCCAGATCCGGTCTCCTCCTGACGATGGCGATGGCCAGCCACCACCTCCTCGTCGGAGGAGGCGTGGTGAACCTCCGTCTCCATCTCCCGTGCCAGGAACAGCAACAAGCGAAGCCGCCGTCGCGGGCCTCCCCATCCCCGAGGAGATCCAGGAGGAAATCCTGCTCCGCCTGCCGGCCAACTCCGTCCTCCACTGCCGCGCCGTGTGCCGGTCGTGGCGCCACATCGCCTCCACCCACGCGTTCCTCCTCCGCCACCACCGCCGCCAGCCGGAGTTCCCCCTTGTCACCTCCTTCCGAAACCCCGCACCCGCTGACCAATGGATGCCCAACTGCCTCGACGCCATCCTCCTCCGATCTGCAGAGCGCCGCCCAATCTTCAGTTTCCCGCGACCCTTTTGTGGAGGTTTCCCCATCACAGCCTCCTGCGATGGCCTCCTCATCGTTGGCGGGTACATCTGCAACCCGACCACACGCCAACGCGCGCCCATTTCCAGGTGGACGATTGACAATATCGTCGGATTATACCGGCATGAACCTTCCGGAGAGTATCGCGTGCTCTACTTCGCTTCGTCAGATACCCCTTCTGAGGTGTATTGCCCGATTTGCTACTGTGTCCTCGCGGTGGGTAGCAACAAGCCGAGGCAAATCCCGTGTTCAGTGACACCCATGGATGAGGAGATCATAGGAGCACCGGGCCCGATGATCTTTGGCAGGCCGGTACTCATCCATGGCAATCTGCACCTGCATTGGAAGAAACGGCGGGGAACACGCTACAATAGGATCCTAGTCTTCAATACGGTGGCGGAGTCATTCCGGCAATTGCGCCCACCAGCTGTGAATCCTCGGAATTATACAAGGTTACTTGCCATGGATGGCATGCTTGCTATGTCCGTTAGCAAAGAACGTGTGATGGACATGAGCATCTTCATGTTGGAAGACTACGATCATGAGGTCTGGGTGTTCCGGTACAAGATTAAGCTGCCAACAATGGAGATCAGGCGTTTCCAAGATCAGGGTGATTGGTGGGCGGAGGTTGTGTCCGAGGAGGGAGATATTCTTGTCAGTTGTTTTGGCTGGTTGTTGCACTGTGACAA-AAGGGTAATTTGGTGTCCAAATTCCAGTACAATGATGACTTGCCAGCAATCAGTCCTCATAGAATCAAGGAAAGCCTTATTCAGCACGCCTTTTTCAAGGAAGGAACAAAGAAATGATCCTGATTGATCCATCTCATTTTGTGCCATGTGAAACGATGCTGAAGAGAACTTTCCTATGTGAAAGACACCGGTGCAAAGACTAAACTTTATATGTTCTTCGTTGCGCTTACTAATTTCTATGTAAGATGTACCTAGCCGTCGCTGTTTGAGGTTACTCCAGCATTTGTAGCTCTCTGACAACATTGTTCTGTTTTTAAAGTTACTTTTGGTTG]

[+] EMBL AK101708             [TCCACAGATCCACTACTCAACGACAACAATGCTCCTTCGATCTGGGCGGCGCCTCGCCGCCGGCGGCAGCCGGCGGCGGCGGCGGCGCACCCCGAGGCTCTCCTCCCGGCGGAGGTTCCCCTCTCAACTCGTCTCGCCGCTCCTCTCGTCGACCCCGTCCGAGCGGGAGCAGCCCCACCTCCTCTCCGGGCCAGATCCGGTCTCCTCCTGACGATGGCGATGGCCAGCCACCACCTCCTCGTCGGAGGAGGCGTGGTGAACCTCCGTCTCCATCTCCCGTGCCAGGAACAGCAACAAGCGAAGCCGCCGTCGCGGGCCTCCCCATCCCCGAGGAGATCCAGGAGGAAATCCTGCTCCGCCTGCCGGCCAACTCCGTCCTCCACTGCCGCGCCGTGTGCCGGTCGTGGCGCCACATCGCCTCCACCCACGCGTTCCTCCTCCGCCACCACCGCCGCCAGCCGGAGTTCCCCCTTGTCACCTCCTTCCGAAACCCCGCACCCGCTGACCAATGGATGCCCAACTGCCTCGACGCCATCCTCCTCCGATCTGCAGAGCGCCGCCCAATCTTCAGTTTCCCGCGACCCTTTTGTGGAGGTTTCCCCATCACAGCCTCCTGCGATGGCCTCCTCATCGTTGGCGGGTACATCTGCAACCCGACCACACGCCAACGCGCGCCCATTTCCAGGTGGACGATTGACAATATCGTCGGATTATACCGGCATGAACCTTCCGGAGAGTATCGCGTGCTCTACTTCGCTTCGTCAGATACCCCTTCTGAGGTGTATTGCCCGATTTGCTACTGTGTCCTCGCGGTGGGTAGCAACAAGCCGAGGCAAATCCCGTGTTCAGTGACACCCATGGATGAGGAGATCATAGGAGCACCGGGCCCGATGATCTTTGGCAGGCCGGTACTCATCCATGGCAATCTGCACCTGCATTGGAAGAAACGGCGGGGAACACGCTACAATAGGATCCTAGTCTTCAATACGGTGGCGGAGTCATTCCGGCAATTGCGCCCACCAGCTGTGAATCCTCGGAATTATACAAGGTTACTTGCCATGGATGGCATGCTTGCTATGTCCGTTAGCAAAGAACGTGTGATGGACATGAGCATCTTCATGTTGGAAGACTACGATCATGAGGTCTGGGTGTTCCGGTACAAGATTAAGCTGCCAACAATGGAGATCAGGCGTTTCCAAGATCAGGGTGATTGGTGGGCGGAGGTTGTGTCCGAGGAGGGAGATATTCTTGTCAGTTGTTTTGGCTGGTTGTTGCACTGTGACAA AAGGGTAATTTGGTGTCCAAATTCCAGTACAATGATGACTTGCCAGCAATCAGTCCTCATAGAATCAAGGAAAGCCTTATTCAGCACGCCTTTTTCAAGGAAGGAACAAAGAAATGATCCTGATTGATCCATCTCATTTTGTGCCATGTGAAACGATGCTGAAGAGAACTTTCCTATGTGAAAGACACCGGTGCAAAGACTAAACTTTATATGTTCTTCGTTGCGCTTACTAATTTCTATGTAAGATGTACCTAGCCGTCGCTGTTTGAGGTTACTCCAGCATTTGTAGCTCTCTGACAACATTGTTCTGTTTTTAAAGTTACTT       ]
[+] EMBL CA764553             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ACAATAGGATCCTAGTCTTCAATACGGTGGCGGAGTCATTCTGGCAATTGCGCCCACCAGCTGTGAATCCTCGGAATTATACAAGGTTACTTGCCATGGATGGCATGCTTGCTATGTCCGTTAGCAAAGAACGTGTGATGGACATGAGCATCTTCATGTTGGAAGACTACGATCATGAGGTCTGGGTGTTCCGGTACAAGATTAAGCTGCCAACAATGGAGATCAGGCGTTTCCAAGATCAGGGTGATTGGTGGGCGGAGGTTGTGTCCGAGGAGGGAGATATTCTTGTCAGTTGTTTTGGCTGGTTGTTGCACTGTGACAACAAGGGTAATTTGGTGTCCAAATTCCAGTACAATGATGACTTGCCAGCAATCAGTCCTCATAGAATCAAGGAAAGCCTTATTCAGCACGCCTTTTTCAAGGAAGGAACAAAGAAATGATCCTGATTGATCCATCTCATTTTGTGCCATGTGAAACGATGCTGAAGAGAACTTTCCTATGTGAAGGACACCGGTGCAAAGACTAAACTTTATATGTTCTTCGTTGCGCTTACTAATTTCTATGTAAGATGTACCTAGCCGTCGCTGTTTGAGGTTACTCCAGCATTTGTAGCTCTCTGACAACATTGTTCTGTTTTTAAAGGTACTTTTGGTTG]




>consensus_4930#0
TCCACAGATCCACTACTCAACGACAACAATGCTCCTTCGATCTGGGCGGCGCCTCGCCGC
CGGCGGCAGCCGGCGGCGGCGGCGGCGCACCCCGAGGCTCTCCTCCCGGCGGAGGTTCCC
CTCTCAACTCGTCTCGCCGCTCCTCTCGTCGACCCCGTCCGAGCGGGAGCAGCCCCACCT
CCTCTCCGGGCCAGATCCGGTCTCCTCCTGACGATGGCGATGGCCAGCCACCACCTCCTC
GTCGGAGGAGGCGTGGTGAACCTCCGTCTCCATCTCCCGTGCCAGGAACAGCAACAAGCG
AAGCCGCCGTCGCGGGCCTCCCCATCCCCGAGGAGATCCAGGAGGAAATCCTGCTCCGCC
TGCCGGCCAACTCCGTCCTCCACTGCCGCGCCGTGTGCCGGTCGTGGCGCCACATCGCCT
CCACCCACGCGTTCCTCCTCCGCCACCACCGCCGCCAGCCGGAGTTCCCCCTTGTCACCT
CCTTCCGAAACCCCGCACCCGCTGACCAATGGATGCCCAACTGCCTCGACGCCATCCTCC
TCCGATCTGCAGAGCGCCGCCCAATCTTCAGTTTCCCGCGACCCTTTTGTGGAGGTTTCC
CCATCACAGCCTCCTGCGATGGCCTCCTCATCGTTGGCGGGTACATCTGCAACCCGACCA
CACGCCAACGCGCGCCCATTTCCAGGTGGACGATTGACAATATCGTCGGATTATACCGGC
ATGAACCTTCCGGAGAGTATCGCGTGCTCTACTTCGCTTCGTCAGATACCCCTTCTGAGG
TGTATTGCCCGATTTGCTACTGTGTCCTCGCGGTGGGTAGCAACAAGCCGAGGCAAATCC
CGTGTTCAGTGACACCCATGGATGAGGAGATCATAGGAGCACCGGGCCCGATGATCTTTG
GCAGGCCGGTACTCATCCATGGCAATCTGCACCTGCATTGGAAGAAACGGCGGGGAACAC
GCTACAATAGGATCCTAGTCTTCAATACGGTGGCGGAGTCATTCCGGCAATTGCGCCCAC
CAGCTGTGAATCCTCGGAATTATACAAGGTTACTTGCCATGGATGGCATGCTTGCTATGT
CCGTTAGCAAAGAACGTGTGATGGACATGAGCATCTTCATGTTGGAAGACTACGATCATG
AGGTCTGGGTGTTCCGGTACAAGATTAAGCTGCCAACAATGGAGATCAGGCGTTTCCAAG
ATCAGGGTGATTGGTGGGCGGAGGTTGTGTCCGAGGAGGGAGATATTCTTGTCAGTTGTT
TTGGCTGGTTGTTGCACTGTGACAAAAGGGTAATTTGGTGTCCAAATTCCAGTACAATGA
TGACTTGCCAGCAATCAGTCCTCATAGAATCAAGGAAAGCCTTATTCAGCACGCCTTTTT
CAAGGAAGGAACAAAGAAATGATCCTGATTGATCCATCTCATTTTGTGCCATGTGAAACG
ATGCTGAAGAGAACTTTCCTATGTGAAAGACACCGGTGCAAAGACTAAACTTTATATGTT
CTTCGTTGCGCTTACTAATTTCTATGTAAGATGTACCTAGCCGTCGCTGTTTGAGGTTAC
TCCAGCATTTGTAGCTCTCTGACAACATTGTTCTGTTTTTAAAGTTACTTTTGGTTG

consensusID : consensus_4930#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 297
fasta sequence

                              [TGAAGGAGTAGAAAGTACAAGTTCTGAAATTCTGGGCGGAGAGGAGACAGAGAGAGAGAGAGGCGGCGCACCCCGAGGCTCTCCTCCCGGCGGAGGTTCCCCTCTCAACTCGTCTCGCCGCTCCTCTCGTCGACCCCGTCCGAGCGGGAGCAGCCCCACCTCCTCTCCGGGCCAGATCCGGTCTCCTCCTGACGATGGCGATGGCCAGCCACCACCTCCTCGTCGGAGGAGGGCGTGGTGAACCTCCGTCACCATCTCCCGTGCCAGGAACAGCAACAAGCGAAGCCGCCGTCGCGG]

[+] EMBL CF331969             [TGAAGGAGTAGAAAGTACAAGTTCTGAAATTCTGGGCGGAGAGGAGACAGAGAGAGAGAGAGGCGGCGCACCCCGAGGCTCTCCTCCCGGCGGAGGTTCCCCTCTCAACTCGTCTCGCCGCTCCTCTCGTCGACCCCGTCCGAGCGGGAGCAGCCCCACCTCCTCTCCGGGCCAGATCCGGTCTCCTCCTGACGATGGCGATGGCCAGCCACCACCTCCTCGTCGGAGGAGGGCGTGGTGAACCTCCGTCACCATCTCCCGTGCCAGGAACAGCAACAAGCGAAGCCGCCGTCGCGG]




>consensus_4930#1
TGAAGGAGTAGAAAGTACAAGTTCTGAAATTCTGGGCGGAGAGGAGACAGAGAGAGAGAG
AGGCGGCGCACCCCGAGGCTCTCCTCCCGGCGGAGGTTCCCCTCTCAACTCGTCTCGCCG
CTCCTCTCGTCGACCCCGTCCGAGCGGGAGCAGCCCCACCTCCTCTCCGGGCCAGATCCG
GTCTCCTCCTGACGATGGCGATGGCCAGCCACCACCTCCTCGTCGGAGGAGGGCGTGGTG
AACCTCCGTCACCATCTCCCGTGCCAGGAACAGCAACAAGCGAAGCCGCCGTCGCGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4930#0      TCCACAGATCCACTACTCAACGACAACAATGCTCCTTCGATCTGGGCGGCGCCTCGCCGC 60
consensus_4930#1      ---------TGAAGGAGTAGAAAGTACAA-GTTCTGAAATTCTGGGCGGAGA-------- 42
                                 *      *   *  **** * **      ********* *         

consensus_4930#0      CGGCGGCAGCCGGCGGCGGCGGCGGCGCACCCCGAGGCTCTCCTCCCGGCGGAGGTTCCC 120
consensus_4930#1      -GGAGACAGAGAGAGAGAGAGGCGGCGCACCCCGAGGCTCTCCTCCCGGCGGAGGTTCCC 101
                       ** * ***   * *   * ****************************************

consensus_4930#0      CTCTCAACTCGTCTCGCCGCTCCTCTCGTCGACCCCGTCCGAGCGGGAGCAGCCCCACCT 180
consensus_4930#1      CTCTCAACTCGTCTCGCCGCTCCTCTCGTCGACCCCGTCCGAGCGGGAGCAGCCCCACCT 161
                      ************************************************************

consensus_4930#0      CCTCTCCGGGCCAGATCCGGTCTCCTCCTGACGATGGCGATGGCCAGCCACCACCTCCTC 240
consensus_4930#1      CCTCTCCGGGCCAGATCCGGTCTCCTCCTGACGATGGCGATGGCCAGCCACCACCTCCTC 221
                      ************************************************************

consensus_4930#0      GTCGGAGGAGG-CGTGGTGAACCTCCGTCTCCATCTCCCGTGCCAGGAACAGCAACAAGC 299
consensus_4930#1      GTCGGAGGAGGGCGTGGTGAACCTCCGTCACCATCTCCCGTGCCAGGAACAGCAACAAGC 281
                      *********** ***************** ******************************

consensus_4930#0      GAAGCCGCCGTCGCGGGCCTCCCCATCCCCGAGGAGATCCAGGAGGAAATCCTGCTCCGC 359
consensus_4930#1      GAAGCCGCCGTCGCGG-------------------------------------------- 297
                      ****************                                            

consensus_4930#0      CTGCCGGCCAACTCCGTCCTCCACTGCCGCGCCGTGTGCCGGTCGTGGCGCCACATCGCC 419
consensus_4930#1      ------------------------------------------------------------
                                                                                  

consensus_4930#0      TCCACCCACGCGTTCCTCCTCCGCCACCACCGCCGCCAGCCGGAGTTCCCCCTTGTCACC 479
consensus_4930#1      ------------------------------------------------------------
                                                                                  

consensus_4930#0      TCCTTCCGAAACCCCGCACCCGCTGACCAATGGATGCCCAACTGCCTCGACGCCATCCTC 539
consensus_4930#1      ------------------------------------------------------------
                                                                                  

consensus_4930#0      CTCCGATCTGCAGAGCGCCGCCCAATCTTCAGTTTCCCGCGACCCTTTTGTGGAGGTTTC 599
consensus_4930#1      ------------------------------------------------------------
                                                                                  

consensus_4930#0      CCCATCACAGCCTCCTGCGATGGCCTCCTCATCGTTGGCGGGTACATCTGCAACCCGACC 659
consensus_4930#1      ------------------------------------------------------------
                                                                                  

consensus_4930#0      ACACGCCAACGCGCGCCCATTTCCAGGTGGACGATTGACAATATCGTCGGATTATACCGG 719
consensus_4930#1      ------------------------------------------------------------
                                                                                  

consensus_4930#0      CATGAACCTTCCGGAGAGTATCGCGTGCTCTACTTCGCTTCGTCAGATACCCCTTCTGAG 779
consensus_4930#1      ------------------------------------------------------------
                                                                                  

consensus_4930#0      GTGTATTGCCCGATTTGCTACTGTGTCCTCGCGGTGGGTAGCAACAAGCCGAGGCAAATC 839
consensus_4930#1      ------------------------------------------------------------
                                                                                  

consensus_4930#0      CCGTGTTCAGTGACACCCATGGATGAGGAGATCATAGGAGCACCGGGCCCGATGATCTTT 899
consensus_4930#1      ------------------------------------------------------------
                                                                                  

consensus_4930#0      GGCAGGCCGGTACTCATCCATGGCAATCTGCACCTGCATTGGAAGAAACGGCGGGGAACA 959
consensus_4930#1      ------------------------------------------------------------
                                                                                  

consensus_4930#0      CGCTACAATAGGATCCTAGTCTTCAATACGGTGGCGGAGTCATTCCGGCAATTGCGCCCA 1019
consensus_4930#1      ------------------------------------------------------------
                                                                                  

consensus_4930#0      CCAGCTGTGAATCCTCGGAATTATACAAGGTTACTTGCCATGGATGGCATGCTTGCTATG 1079
consensus_4930#1      ------------------------------------------------------------
                                                                                  

consensus_4930#0      TCCGTTAGCAAAGAACGTGTGATGGACATGAGCATCTTCATGTTGGAAGACTACGATCAT 1139
consensus_4930#1      ------------------------------------------------------------
                                                                                  

consensus_4930#0      GAGGTCTGGGTGTTCCGGTACAAGATTAAGCTGCCAACAATGGAGATCAGGCGTTTCCAA 1199
consensus_4930#1      ------------------------------------------------------------
                                                                                  

consensus_4930#0      GATCAGGGTGATTGGTGGGCGGAGGTTGTGTCCGAGGAGGGAGATATTCTTGTCAGTTGT 1259
consensus_4930#1      ------------------------------------------------------------
                                                                                  

consensus_4930#0      TTTGGCTGGTTGTTGCACTGTGACAAAAGGGTAATTTGGTGTCCAAATTCCAGTACAATG 1319
consensus_4930#1      ------------------------------------------------------------
                                                                                  

consensus_4930#0      ATGACTTGCCAGCAATCAGTCCTCATAGAATCAAGGAAAGCCTTATTCAGCACGCCTTTT 1379
consensus_4930#1      ------------------------------------------------------------
                                                                                  

consensus_4930#0      TCAAGGAAGGAACAAAGAAATGATCCTGATTGATCCATCTCATTTTGTGCCATGTGAAAC 1439
consensus_4930#1      ------------------------------------------------------------
                                                                                  

consensus_4930#0      GATGCTGAAGAGAACTTTCCTATGTGAAAGACACCGGTGCAAAGACTAAACTTTATATGT 1499
consensus_4930#1      ------------------------------------------------------------
                                                                                  

consensus_4930#0      TCTTCGTTGCGCTTACTAATTTCTATGTAAGATGTACCTAGCCGTCGCTGTTTGAGGTTA 1559
consensus_4930#1      ------------------------------------------------------------
                                                                                  

consensus_4930#0      CTCCAGCATTTGTAGCTCTCTGACAACATTGTTCTGTTTTTAAAGTTACTTTTGGTTG 1617
consensus_4930#1      ----------------------------------------------------------