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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4932#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 2066 fasta sequence
[GCGCCCTCCCAACCATCTGCTCTCTCTAAGCTCTAGCTCTACCTTTCTTCCTCCTCGATCCATCCATCATCGATCATTCTTCTTCTTCTTCACCTAGCTAGCTTGCTCCCGCCAGACGGTTCTAATATAATGAACCATCGCTAGCTAGTTCATCCCATCGTACAGTGCACTAGTATAGTATATGGAGGAGTACGTGACCGCGGGAAGCACTACTCCTCCGCCCCATCTTCACCAGCTGCTCTCCGGCACCGGCGCTGGACCACCACCGTCGTCTCACGATGACGCCCATCCTCACCCTCATCCTCAGCTGTTTAATTTCAATTACAGAGCAGAAGAACAGTGCCCGCGCGGCGGCTGCGGCAGAGACTTGAGCAAGAGGTGAGTGAGCTGAAGAAGCAGCTGCGGAACGAGGAGGCGGTGCATGATATCCTAAACCGCGCCCTTCAGCACTCAAACACCACCAAATCATCATCATCATTGTCGTCTCCATCCGTCCTCCACAACATCCCTGCATTCATCCCGCACAAGGCCAAGGAGCTTCTAGCAGAGCTGGTGCTGGTGGAGGAGGAGATTGCCCGCCTGGAGACCCAGATCCGAAGCATGAAGAAGGCGGCGGCCACCACAACTACCCAGAATGCAATCAACCTCACCCACGACGACACTGTCAATGCCAATGTTAATAGTGGAGGATCTGCAGCAGGAGATCATGCCAACATCAAGTCCATGTTCTTCATCAGTCAGGCCATCAACGGCCTCGACACAAGCCGCCATCATCATCCTCTCATGACCATCGTCAGCAATAAACCTCCCACTCCCAGTCCAAAGCTTAATTCACTCGATGATACTAGTAGTAGTAGTAACAAAAAGAAGAAGATGGTGCAGCAGCCCAACAAGCTGTCGGAGAGGATCGTCAAGTGCCTCATCTGCATCTTCATCCGACTGCTCAGGTCCTCGAGGGTCGCCGACCTGCAGCTGCAGCAGCAGGACAACAACAACAACAACGCTAGTAGTAGGTCCTCTTCCTCATCGCCTTCACTGACCAGGCAGCATCAGGGAGGAGGAGGAGGTGGAAGCTTCAGAATCGACACCAGCCTGTTAATGAACAAACAGCAGCAGCAGCAGGATTGCCGGTCGGGGCAGCAGGATCACTACGGCATCTTCGCCATCCCGGATTCCATCGTCAGAGATATAGGCCCCTACAAGAACCTCGTCAGCTTCACTTCCTCCGCTTTCGACCTCAGAGGATTCTCCACCTCTCCCCTGCTCACCAAGCTCAGGGGGATGCTGGAGGCACTGCAGCATGTGGATTTGAGGTTTCTCACTCACCACCAAAAGCTTGCCTTCTGGCTCAACATATACAACACCTGCATCATGCACGGGATTTTGCACAATGGACTACCCTCAAACCCTGAAAAGCTACTTGCACTGAAGAACAAGGCCACGCTGAATGTATCAGGGCAAAAGTTGAACGCCTTGGTGATAGAGAATTTCATCCTCAGACAGCCATCCAGTGTCAAAGAAGAATTCTGGAAATGCGAGGTGGATGTGGAAGAACAGCAGGTGAGGAGTCGTTACGGGCTCAACAGCTCAGAACCCAACATTCTGTTCGCACTCTGCTGTGGCAACAGATCATCTCCCGCGCTACGAATATACAAGGCTGATCGTGTGATGATGGATCTGGAGAAGGCGAAGCTGGAGTATCTGCAGGCATCGCTGGTGGTGACATCGACGAGGAGGAGGCTGATGATCCCAAGCCTCATACACTCCAACATGCACGACTTCGCAAAGGACCTGGACTCGCTTGTTCGCTGGATTTGCGACCAGCTGCCCACGTCCTGGTCTCTCAGGAAATCCATGGTTGATTGCCTCAGGTGGTCCGGACACCGTCTCAACATCCATCACCTCGTCGACGTCATTCCATACGACTACGACTTTCAGTACCTACTCCCAATGTGAACTGATTCCATCTCTGCTTTCTTTCCTTTTTTGCCGGTATATATGTATGAGTATTAATTAATTTGTTTTGCGGAGACCATCTTAATTAATCTATGGCTATCCAATGATAA]
[+] EMBL AK072837 [GCGCCCTCCCAACCATCTGCTCTCTCTAAGCTCTAGCTCTACCTTTCTTCCTCCTCGATCCATCCATCATCGATCATTCTTCTTCTTCTTCACCTAGCTAGCTTGCTCCCGCCAGACGGTTCTAATATAATGAACCATCGCTAGCTAGTTCATCCCATCGTACAGTGCACTAGTATAGTATATGGAGGAGTACGTGACCGCGGGAAGCACTACTCCTCCGCCCCATCTTCACCAGCTGCTCTCCGGCACCGGCGCTGGACCACCACCGTCGTCTCACGATGACGCCCATCCTCACCCTCATCCTCAGCTGTTTAATTTCAATTACAGAGCAGAAGAACAGTGCCCGCGCGGCGGCTGCGGCAGAGACTTGAGCAAGAGGTGAGTGAGCTGAAGAAGCAGCTGCGGAACGAGGAGGCGGTGCATGATATCCTAAACCGCGCCCTTCAGCACTCAAACACCACCAAATCATCATCATCATTGTCGTCTCCATCCGTCCTCCACAACATCCCTGCATTCATCCCGCACAAGGCCAAGGAGCTTCTAGCAGAGCTGGTGCTGGTGGAGGAGGAGATTGCCCGCCTGGAGACCCAGATCCGAAGCATGAAGAAGGCGGCGGCCACCACAACTACCCAGAATGCAATCAACCTCACCCACGACGACACTGTCAATGCCAATGTTAATAGTGGAGGATCTGCAGCAGGAGATCATGCCAACATCAAGTCCATGTTCTTCATCAGTCAGGCCATCAACGGCCTCGACACAAGCCGCCATCATCATCCTCTCATGACCATCGTCAGCAATAAACCTCCCACTCCCAGTCCAAAGCTTAATTCACTCGATGATACTAGTAGTAGTAGTAACAAAAAGAAGAAGATGGTGCAGCAGCCCAACAAGCTGTCGGAGAGGATCGTCAAGTGCCTCATCTGCATCTTCATCCGACTGCTCAGGTCCTCGAGGGTCGCCGACCTGCAGCTGCAGCAGCAGGACAACAACAACAACAACGCTAGTAGTAGGTCCTCTTCCTCATCGCCTTCACTGACCAGGCAGCATCAGGGAGGAGGAGGAGGTGGAAGCTTCAGAATCGACACCAGCCTGTTAATGAACAAACAGCAGCAGCAGCAGGATTGCCGGTCGGGGCAGCAGGATCACTACGGCATCTTCGCCATCCCGGATTCCATCGTCAGAGATATAGGCCCCTACAAGAACCTCGTCAGCTTCACTTCCTCCGCTTTCGACCTCAGAGGATTCTCCACCTCTCCCCTGCTCACCAAGCTCAGGGGGATGCTGGAGGCACTGCAGCATGTGGATTTGAGGTTTCTCACTCACCACCAAAAGCTTGCCTTCTGGCTCAACATATACAACACCTGCATCATGCACGGGATTTTGCACAATGGACTACCCTCAAACCCTGAAAAGCTACTTGCACTGAAGAACAAGGCCACGCTGAATGTATCAGGGCAAAAGTTGAACGCCTTGGTGATAGAGAATTTCATCCTCAGACAGCCATCCAGTGTCAAAGAAGAATTCTGGAAATGCGAGGTGGATGTGGAAGAACAGCAGGTGAGGAGTCGTTACGGGCTCAACAGCTCAGAACCCAACATTCTGTTCGCACTCTGCTGTGGCAACAGATCATCTCCCGCGCTACGAATATACAAGGCTGATCGTGTGATGATGGATCTGGAGAAGGCGAAGCTGGAGTATCTGCAGGCATCGCTGGTGGTGACATCGACGAGGAGGAGGCTGATGATCCCAAGCCTCATACACTCCAACATGCACGACTTCGCAAAGGACCTGGACTCGCTTGTTCGCTGGATTTGCGACCAGCTGCCCACGTCCTGGTCTCTCAGGAAATCCATGGTTGATTGCCTCAGGTGGTCCGGACACCGTCTCAACATCCATCACCTCGTCGACGTCATTCCATACGACTACGACTTTCAGTACCTACTCCCAATGTGAACTGATTCCATCTCTGCTTTCTTTCCTTTTTTGCCGGTATATATGTATGAGTATTAATTAATTTGTTTTGCGGAGACCATCTTAATTAATCTATGGCTATCCAATGAT ]
[+] EMBL AU085841 [ AAAAGCTACTTGCACTGAAGAACAAGCCCACGCTGAATGTATCAGGGCAAAAGTTG ACNCNTTGGTGATAGAGAATTTCATCCTCAGACAGCCATCCAGTGTCAAAGAAGAATTCTGGAAATGCGAGGTGGATGTGGAAGAACAGCAGGTGAGGAGTCGTTACGGGCTCAACAGCTCAGAACCCAACATTCTGTTCGCACTCTGCTGTGGCAACAGATCATCTCCCGCGCTACGAATATACAAGGCTGATCGTGTGATGATGGATCTGGAGAAGGCGAAGCTGGAGTATCTGCAGGCATCGCTGGTGGTGACATCGACGAGGAGGAGGCTGATGATCCCAAGCCTCATACACTCCAACATGCACGACTTCGCAAAGGACCTGGACTCGCTTGTTCGCTGGATTTGCGACCAGCTGCCCACGTCCTGGTCTCTCAGGAAATCCATGGTTGATTGCCTCAGGTGGTCCGGACACCGTCTCAACATCCATCACCTCGTCGACGTCATTCCATACGACTACGACTTTCAGTACCTACTCCCAATGTGAACTGATTCCATCTCTGCTTTCTTTCCTTTTTTGCCGGTATATATGTATGAGTATTAATTAATTTGTTTTGCGGAGACCATCTTAATTAATCTATGGCTATCCAAaaaaaa]
consensusID : consensus_4932#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 410 fasta sequence
[NTNAGNCTTGCTCCCGCCAGACGGTTCTAATATAATGAACCATCGCTAGCTAGTTCATCCCATCGTACAGTGCACTAGTATAGTATATGGAGGAGTACGTGACCGCGGGAAGCACTACTCCTCCGCCCCATCTTCACCAGCTGCTCTCCGGCACCGGCGCTGCACCACCACCGTCGTCTCACGATGACGCCCATCCTCACCCTCATCCTCAGAGCAGAAGAACAGTGCCCGCGCGGCGGCTGCGGCAGAGACTTGAGCAAGAGGTGAGTGAGCTGAAGAAGCAGCTGCGGAACGAGGAGGCGGTGCATGATATCCTAAACCGCGCCCTTCAGCACTNAAACACCACCAAATCATCATCATCATTGTCGTCTCCATCCGTCCTCCACAACATCCCTGCATTCATCCCGAAN]
[+] EMBL C72169 [NTNAGNCTTGCTCCCGCCAGACGGTTCTAATATAATGAACCATCGCTAGCTAGTTCATCCCATCGTACAGTGCACTAGTATAGTATATGGAGGAGTACGTGACCGCGGGAAGCACTACTCCTCCGCCCCATCTTCACCAGCTGCTCTCCGGCACCGGCGCTGCACCACCACCGTCGTCTCACGATGACGCCCATCCTCACCCTCATCCTCAGAGCAGAAGAACAGTGCCCGCGCGGCGGCTGCGGCAGAGACTTGAGCAAGAGGTGAGTGAGCTGAAGAAGCAGCTGCGGAACGAGGAGGCGGTGCATGATATCCTAAACCGCGCCCTTCAGCACTNAAACACCACCAAATCATCATCATCATTGTCGTCTCCATCCGTCCTCCACAACATCCCTGCATTCATCCCGAAN]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4932#0 GCGCCCTCCCAACCATCTGCTCTCTCTAAGCTCTAGCTCTACCTTTCTTCCTCCTCGATC 60
consensus_4932#1 ------------------------------------------------------------
consensus_4932#0 CATCCATCATCGATCATTCTTCTTCTTCTTCACCTAGCTAGCTTGCTCCCGCCAGACGGT 120
consensus_4932#1 -----------------------------------NTNAGNCTTGCTCCCGCCAGACGGT 25
*******************
consensus_4932#0 TCTAATATAATGAACCATCGCTAGCTAGTTCATCCCATCGTACAGTGCACTAGTATAGTA 180
consensus_4932#1 TCTAATATAATGAACCATCGCTAGCTAGTTCATCCCATCGTACAGTGCACTAGTATAGTA 85
************************************************************
consensus_4932#0 TATGGAGGAGTACGTGACCGCGGGAAGCACTACTCCTCCGCCCCATCTTCACCAGCTGCT 240
consensus_4932#1 TATGGAGGAGTACGTGACCGCGGGAAGCACTACTCCTCCGCCCCATCTTCACCAGCTGCT 145
************************************************************
consensus_4932#0 CTCCGGCACCGGCGCTGGACCACCACCGTCGTCTCACGATGACGCCCATCCTCACCCTCA 300
consensus_4932#1 CTCCGGCACCGGCGCTGCACCACCACCGTCGTCTCACGATGACGCCCATCCTCACCCTCA 205
***************** ******************************************
consensus_4932#0 TCCTCAGCTGTTTAATTTCAATTACAGAGCAGAAGAACAGTGCCCGCGCGGCGGCTGCGG 360
consensus_4932#1 TCCTCAG--------------------AGCAGAAGAACAGTGCCCGCGCGGCGGCTGCGG 245
******* *********************************
consensus_4932#0 CAGAGACTTGAGCAAGAGGTGAGTGAGCTGAAGAAGCAGCTGCGGAACGAGGAGGCGGTG 420
consensus_4932#1 CAGAGACTTGAGCAAGAGGTGAGTGAGCTGAAGAAGCAGCTGCGGAACGAGGAGGCGGTG 305
************************************************************
consensus_4932#0 CATGATATCCTAAACCGCGCCCTTCAGCACTCAAACACCACCAAATCATCATCATCATTG 480
consensus_4932#1 CATGATATCCTAAACCGCGCCCTTCAGCACTNAAACACCACCAAATCATCATCATCATTG 365
******************************* ****************************
consensus_4932#0 TCGTCTCCATCCGTCCTCCACAACATCCCTGCATTCATCCCGCACAAGGCCAAGGAGCTT 540
consensus_4932#1 TCGTCTCCATCCGTCCTCCACAACATCCCTGCATTCATCCCGAAN--------------- 410
****************************************** *
consensus_4932#0 CTAGCAGAGCTGGTGCTGGTGGAGGAGGAGATTGCCCGCCTGGAGACCCAGATCCGAAGC 600
consensus_4932#1 ------------------------------------------------------------
consensus_4932#0 ATGAAGAAGGCGGCGGCCACCACAACTACCCAGAATGCAATCAACCTCACCCACGACGAC 660
consensus_4932#1 ------------------------------------------------------------
consensus_4932#0 ACTGTCAATGCCAATGTTAATAGTGGAGGATCTGCAGCAGGAGATCATGCCAACATCAAG 720
consensus_4932#1 ------------------------------------------------------------
consensus_4932#0 TCCATGTTCTTCATCAGTCAGGCCATCAACGGCCTCGACACAAGCCGCCATCATCATCCT 780
consensus_4932#1 ------------------------------------------------------------
consensus_4932#0 CTCATGACCATCGTCAGCAATAAACCTCCCACTCCCAGTCCAAAGCTTAATTCACTCGAT 840
consensus_4932#1 ------------------------------------------------------------
consensus_4932#0 GATACTAGTAGTAGTAGTAACAAAAAGAAGAAGATGGTGCAGCAGCCCAACAAGCTGTCG 900
consensus_4932#1 ------------------------------------------------------------
consensus_4932#0 GAGAGGATCGTCAAGTGCCTCATCTGCATCTTCATCCGACTGCTCAGGTCCTCGAGGGTC 960
consensus_4932#1 ------------------------------------------------------------
consensus_4932#0 GCCGACCTGCAGCTGCAGCAGCAGGACAACAACAACAACAACGCTAGTAGTAGGTCCTCT 1020
consensus_4932#1 ------------------------------------------------------------
consensus_4932#0 TCCTCATCGCCTTCACTGACCAGGCAGCATCAGGGAGGAGGAGGAGGTGGAAGCTTCAGA 1080
consensus_4932#1 ------------------------------------------------------------
consensus_4932#0 ATCGACACCAGCCTGTTAATGAACAAACAGCAGCAGCAGCAGGATTGCCGGTCGGGGCAG 1140
consensus_4932#1 ------------------------------------------------------------
consensus_4932#0 CAGGATCACTACGGCATCTTCGCCATCCCGGATTCCATCGTCAGAGATATAGGCCCCTAC 1200
consensus_4932#1 ------------------------------------------------------------
consensus_4932#0 AAGAACCTCGTCAGCTTCACTTCCTCCGCTTTCGACCTCAGAGGATTCTCCACCTCTCCC 1260
consensus_4932#1 ------------------------------------------------------------
consensus_4932#0 CTGCTCACCAAGCTCAGGGGGATGCTGGAGGCACTGCAGCATGTGGATTTGAGGTTTCTC 1320
consensus_4932#1 ------------------------------------------------------------
consensus_4932#0 ACTCACCACCAAAAGCTTGCCTTCTGGCTCAACATATACAACACCTGCATCATGCACGGG 1380
consensus_4932#1 ------------------------------------------------------------
consensus_4932#0 ATTTTGCACAATGGACTACCCTCAAACCCTGAAAAGCTACTTGCACTGAAGAACAAGGCC 1440
consensus_4932#1 ------------------------------------------------------------
consensus_4932#0 ACGCTGAATGTATCAGGGCAAAAGTTGAACGCCTTGGTGATAGAGAATTTCATCCTCAGA 1500
consensus_4932#1 ------------------------------------------------------------
consensus_4932#0 CAGCCATCCAGTGTCAAAGAAGAATTCTGGAAATGCGAGGTGGATGTGGAAGAACAGCAG 1560
consensus_4932#1 ------------------------------------------------------------
consensus_4932#0 GTGAGGAGTCGTTACGGGCTCAACAGCTCAGAACCCAACATTCTGTTCGCACTCTGCTGT 1620
consensus_4932#1 ------------------------------------------------------------
consensus_4932#0 GGCAACAGATCATCTCCCGCGCTACGAATATACAAGGCTGATCGTGTGATGATGGATCTG 1680
consensus_4932#1 ------------------------------------------------------------
consensus_4932#0 GAGAAGGCGAAGCTGGAGTATCTGCAGGCATCGCTGGTGGTGACATCGACGAGGAGGAGG 1740
consensus_4932#1 ------------------------------------------------------------
consensus_4932#0 CTGATGATCCCAAGCCTCATACACTCCAACATGCACGACTTCGCAAAGGACCTGGACTCG 1800
consensus_4932#1 ------------------------------------------------------------
consensus_4932#0 CTTGTTCGCTGGATTTGCGACCAGCTGCCCACGTCCTGGTCTCTCAGGAAATCCATGGTT 1860
consensus_4932#1 ------------------------------------------------------------
consensus_4932#0 GATTGCCTCAGGTGGTCCGGACACCGTCTCAACATCCATCACCTCGTCGACGTCATTCCA 1920
consensus_4932#1 ------------------------------------------------------------
consensus_4932#0 TACGACTACGACTTTCAGTACCTACTCCCAATGTGAACTGATTCCATCTCTGCTTTCTTT 1980
consensus_4932#1 ------------------------------------------------------------
consensus_4932#0 CCTTTTTTGCCGGTATATATGTATGAGTATTAATTAATTTGTTTTGCGGAGACCATCTTA 2040
consensus_4932#1 ------------------------------------------------------------
consensus_4932#0 ATTAATCTATGGCTATCCAATGATAA 2066
consensus_4932#1 --------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||