cluster # 4942

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Oryza sativa
cluster # 4942 cluster # 4942 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4942#0 length = 687 sequences # 1

consensus_4942#1 length = 345 sequences # 2

consensusID : consensus_4942#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 687
fasta sequence

                              [TTTTTTTTTTACAGACAATTGTATGGATATTCATACCTGGGTGAAACTATTCTTGTTTTTATTGCATTTACAAAGTGCAGATTCTTATGCATCAAAAAAGGAATAAATAAAAAACCGGCGCCTATCAAATATTAATCTATCAGCCTTAGGTACTTCTCTCCATAATCACCAGCTATGAAGGGCACCCCTGTATGTACATCCGAATCTGAATGAATTTCTAATTAAGCCTTCATCTTTAAGAAAAGAGGATGGATCCGTCCTTTGTTTTAAATCGGATAACAAAAATACCGCGGACTATCCATAATTGATTTCAATATGTTTGCGAACTAGGTTTTACTATAACGACGCCGACATAGAGCTTGTAGACAATCATGATAGCTGGCGAGATCCTTTTGTAATTGCCTAACATTTTCGGCTGTGACGATTTTACTAGGGCTCCAATCTTAAATTTCCATATTAGCTCACACATATGGCAAACGGTCTTGAACCCTCACACTTAATGCGGAGATGCACCTTGGGCAATTTGAATATTCACCACTCTTACCACTTATATGGTGGGTTATAGCGCACTCAGATTATTGACCCAGAGCCTATTTGGGAACAGGTGCTATGCTTACGGGAACCCAACCGACCTTTTTCATGGTCACAAAAGACACCGGGGCTCTCCCATTGGAGTTGCAATCCCCC]

[+] EMBL CA760811             [TTTTTTTTTTACAGACAATTGTATGGATATTCATACCTGGGTGAAACTATTCTTGTTTTTATTGCATTTACAAAGTGCAGATTCTTATGCATCAAAAAAGGAATAAATAAAAAACCGGCGCCTATCAAATATTAATCTATCAGCCTTAGGTACTTCTCTCCATAATCACCAGCTATGAAGGGCACCCCTGTATGTACATCCGAATCTGAATGAATTTCTAATTAAGCCTTCATCTTTAAGAAAAGAGGATGGATCCGTCCTTTGTTTTAAATCGGATAACAAAAATACCGCGGACTATCCATAATTGATTTCAATATGTTTGCGAACTAGGTTTTACTATAACGACGCCGACATAGAGCTTGTAGACAATCATGATAGCTGGCGAGATCCTTTTGTAATTGCCTAACATTTTCGGCTGTGACGATTTTACTAGGGCTCCAATCTTAAATTTCCATATTAGCTCACACATATGGCAAACGGTCTTGAACCCTCACACTTAATGCGGAGATGCACCTTGGGCAATTTGAATATTCACCACTCTTACCACTTATATGGTGGGTTATAGCGCACTCAGATTATTGACCCAGAGCCTATTTGGGAACAGGTGCTATGCTTACGGGAACCCAACCGACCTTTTTCATGGTCACAAAAGACACCGGGGCTCTCCCATTGGAGTTGCAATCCCCC]




>consensus_4942#0
TTTTTTTTTTACAGACAATTGTATGGATATTCATACCTGGGTGAAACTATTCTTGTTTTT
ATTGCATTTACAAAGTGCAGATTCTTATGCATCAAAAAAGGAATAAATAAAAAACCGGCG
CCTATCAAATATTAATCTATCAGCCTTAGGTACTTCTCTCCATAATCACCAGCTATGAAG
GGCACCCCTGTATGTACATCCGAATCTGAATGAATTTCTAATTAAGCCTTCATCTTTAAG
AAAAGAGGATGGATCCGTCCTTTGTTTTAAATCGGATAACAAAAATACCGCGGACTATCC
ATAATTGATTTCAATATGTTTGCGAACTAGGTTTTACTATAACGACGCCGACATAGAGCT
TGTAGACAATCATGATAGCTGGCGAGATCCTTTTGTAATTGCCTAACATTTTCGGCTGTG
ACGATTTTACTAGGGCTCCAATCTTAAATTTCCATATTAGCTCACACATATGGCAAACGG
TCTTGAACCCTCACACTTAATGCGGAGATGCACCTTGGGCAATTTGAATATTCACCACTC
TTACCACTTATATGGTGGGTTATAGCGCACTCAGATTATTGACCCAGAGCCTATTTGGGA
ACAGGTGCTATGCTTACGGGAACCCAACCGACCTTTTTCATGGTCACAAAAGACACCGGG
GCTCTCCCATTGGAGTTGCAATCCCCC

consensusID : consensus_4942#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 345
fasta sequence

                              [TTTTTTTTTCATGCCTAAAGTCACAGATAATCATATATCTTTTACTTACACAGTGGCAGATACAGATAATTGTATGGATATTCATACATGGGTGGAACTATTCTTGTTTTTATTGCATTTACAAAATGCATAAGCATATGCATCAGAAAAGGAAAAAATAAAAAACCAACACCTATGAAATATGAATCTATCATCCTTATGTACATCTCTACATATTCACAAGCTATGAAAAGAACCCCGTATGTACATCCAAATCTGAATGAATTTCTAATCAAGCCTTCATCTTCGAGAAAAGAGGAAGGATCCATCCTTTGCTCTAAATCGGATAAAAGAAATACCGTAAAC]

[+] EMBL CA763267             [TTTTTTTTTCATGCCTAAAGTCACAGATAATCATATATCTTTTACTTACACAGTGGCAGATACAGATAATTGTATGGATATTCATACATGGGTGGAACTATTCTTGTTTTTATTGCATTTACAAAATGCATAAGCATATGCATCAGAAAAGGAAAAAATAAAAAACCAACACCTATGAAATATGAATCTATCATCCTTATGTACATCTCTACATATTCACAAGCTATGAAAAGAACCCCGTATGTACATCCAAATCTGAATGAATTTCTAATCAAGCCTTCATCTTCGAGAAAAGAGGAAGGATCCATCCTTTGCTCTAAATCGGATAAAAGAAATACCGTAAAC]
[+] EMBL CF297011             [                                                           tttttttTAATTGTATGGATATTCATACATGGGTGGAACTATTCTTGTTTTTATTGCATTTACAAAATGCATAAGCATATGCATCAGAAAAGGAAAAAATAAAAAACTAACACCTATGAAATATGAATCTATCATCC TATGTACATCTCTACATATTCACAAGCTATGAAAAGAACCCTGTATGTACATCCAAATCTGAATGAATTTCTAATCAAGCCTTCATCTTCGAGAAAAGAGGAAGGATCCATCCTTTGCTCTAAATCGGATAAAAGAAATACCGTAGAC]




>consensus_4942#1
TTTTTTTTTCATGCCTAAAGTCACAGATAATCATATATCTTTTACTTACACAGTGGCAGA
TACAGATAATTGTATGGATATTCATACATGGGTGGAACTATTCTTGTTTTTATTGCATTT
ACAAAATGCATAAGCATATGCATCAGAAAAGGAAAAAATAAAAAACCAACACCTATGAAA
TATGAATCTATCATCCTTATGTACATCTCTACATATTCACAAGCTATGAAAAGAACCCCG
TATGTACATCCAAATCTGAATGAATTTCTAATCAAGCCTTCATCTTCGAGAAAAGAGGAA
GGATCCATCCTTTGCTCTAAATCGGATAAAAGAAATACCGTAAAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4942#0      ---------------------------------------------------TTTTTTTTT 9
consensus_4942#1      TTTTTTTTTCATGCCTAAAGTCACAGATAATCATATATCTTTTACTTACACAGTGGCAGA 60
                                                                           *      

consensus_4942#0      TACAGACAATTGTATGGATATTCATACCTGGGTGAAACTATTCTTGTTTTTATTGCATTT 69
consensus_4942#1      TACAGATAATTGTATGGATATTCATACATGGGTGGAACTATTCTTGTTTTTATTGCATTT 120
                      ****** ******************** ****** *************************

consensus_4942#0      ACAAAGTGCAGATTCTTATGCATCAAAAAAGGAATAAATAAAAAACCGGCGCCTATCAAA 129
consensus_4942#1      ACAAAATGCATAAGCATATGCATCAGAAAAGGAAAAAATAAAAAACCAACACCTATGAAA 180
                      ***** **** *  * ********* ******** ************  * ***** ***

consensus_4942#0      TATTAATCTATCAGCCTTAGGTACTTCTCTCCATAATCACCAGCTATGAAGGGCACCCCT 189
consensus_4942#1      TATGAATCTATCATCCTTATGTACATCTCTACATATTCACAAGCTATGAAAAGAACCCC- 239
                      *** ********* ***** **** ***** **** **** *********  * ***** 

consensus_4942#0      GTATGTACATCCGAATCTGAATGAATTTCTAATTAAGCCTTCATCTTTAAGAAAAGAGGA 249
consensus_4942#1      GTATGTACATCCAAATCTGAATGAATTTCTAATCAAGCCTTCATCTTCGAGAAAAGAGGA 299
                      ************ ******************** *************  ***********

consensus_4942#0      TGGATCCGTCCTTTGTTTTAAATCGGATAACAAAAATACCGCGGACTATCCATAATTGAT 309
consensus_4942#1      AGGATCCATCCTTTGCTCTAAATCGGATAAAAGAAATACCGTAAAC-------------- 345
                       ****** ******* * ************ * ********   **              

consensus_4942#0      TTCAATATGTTTGCGAACTAGGTTTTACTATAACGACGCCGACATAGAGCTTGTAGACAA 369
consensus_4942#1      ------------------------------------------------------------
                                                                                  

consensus_4942#0      TCATGATAGCTGGCGAGATCCTTTTGTAATTGCCTAACATTTTCGGCTGTGACGATTTTA 429
consensus_4942#1      ------------------------------------------------------------
                                                                                  

consensus_4942#0      CTAGGGCTCCAATCTTAAATTTCCATATTAGCTCACACATATGGCAAACGGTCTTGAACC 489
consensus_4942#1      ------------------------------------------------------------
                                                                                  

consensus_4942#0      CTCACACTTAATGCGGAGATGCACCTTGGGCAATTTGAATATTCACCACTCTTACCACTT 549
consensus_4942#1      ------------------------------------------------------------
                                                                                  

consensus_4942#0      ATATGGTGGGTTATAGCGCACTCAGATTATTGACCCAGAGCCTATTTGGGAACAGGTGCT 609
consensus_4942#1      ------------------------------------------------------------
                                                                                  

consensus_4942#0      ATGCTTACGGGAACCCAACCGACCTTTTTCATGGTCACAAAAGACACCGGGGCTCTCCCA 669
consensus_4942#1      ------------------------------------------------------------
                                                                                  

consensus_4942#0      TTGGAGTTGCAATCCCCC 687
consensus_4942#1      ------------------