These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4945#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 843 fasta sequence [TCCTGTCCAAGGTGGTCCTCCAAGACTGACATCCGTTGTTAAATGTGGTGATGCTAGTCGAGACAGAATTCGGGCGATACTTGGTGATGCCTTCTCCAGAGTTTCTGAAGAGACTAGAAAGGATGACAGGGAGGAAGTGAGGAACATCATAGAAGAAGTAAAAGCATGTGACCCATTCAGGATTGCTGTGATGGTAGAGTGTGCCTTGTTTCAGAAGCTGGGGAATTTTAATGGACCTAATAAGCAAAGGTACAGATCATTGATGTTCAATCTGAAGGATGATCACAACACAGACTTCCGGAGAAGGGTTCTTCTAGGACAAGTGCAGCCTGAGAGAATTGCTGACCTAACCCCGACAGAAATGGCTAGCGACACCAGGAAGCTTGAGAACAAGAAGATCGAGGAGAAGGCTCTGTTCGAGTGCGAGCGTGGAGGAGCACCGAAGGCCACCACTGATCAGTTCAAGTGTGGCAGGTGCGGCCAGCGCAAGACTACCTACTACCAGCTCCAGACTCGGAGCGCCGACGAGCCGATGACGACGTTCGTGACCTGCGTGAACTGCAACAATCACTGGAAGTTCTGCTAAGCTAGGCACATCCTACTGAGAAGTGTTAGTGTAGTTGACCCTGGAGTTTGACAGGCAGGTTAGTTTCGGGCCCTGCTTATCTGGGCCCGTTTCATCTTTTTTCCCCTTAAGTTAGCTTGTTCCGAATTCGATTTGTTCTAGTGCCATTTGACTGCATAATGGCCGGCCGTTGGGCTTGCATTGTCAGGCTACTGCTGTTGTACTTATCAGTCTTGTTTATTGTACCATTGGATGCAATAATGCCATAATGGTCATGC] [+] EMBL AK103353 [TCCTGTCCAAGGTGGTCCTCCAAGACTGACATCCGTTGTTAAATGTGGTGATGCTAGTCGAGACAGAATTCGGGCGATACTTGGTGATGCCTTCTCCAGAGTTTCTGAAGAGACTAGAAAGGATGACAGGGAGGAAGTGAGGAACATCATAGAAGAAGTAAAAGCATGTGACCCATTCAGGATTGCTGTGATGGTAGAGTGTGCCTTGTTTCAGAAGCTGGGGAATTTTAATGGACCTAATAAGCAAAGGTACAGATCATTGATGTTCAATCTGAAGGATGATCACAACACAGACTTCCGGAGAAGGGTTCTTCTAGGACAAGTGCAGCCTGAGAGAATTGCTGACCTAACCCCGACAGAAATGGCTAGCGACACCAGGAAGCTTGAGAACAAGAAGATCGAGGAGAAGGCTCTGTTCGAGTGCGAGCGTGGAGGAGCACCGAAGGCCACCACTGATCAGTTCAAGTGTGGCAGGTGCGGCCAGCGCAAGACTACCTACTACCAGCTCCAGACTCGGAGCGCCGACGAGCCGATGACGACGTTCGTGACCTGCGTGAACTGCAACAATCACTGGAAGTTCTGCTAAGCTAGGCACATCCTACTGAGAAGTGTTAGTGTAGTTGACCCTGGAGTTTGACAGGCAGGTTAGTTTCGGGCCCTGCTTATCTGGGCCCGTTTCATCTTTTTTCCCCTTAAGTTAGCTTGTTCCGAATTCGATTTGTTCTAGTGCCATTTGACTGCATAATGGCCGGCCGTTGGGCTTGCATTGTCAGGCTACTGCTGTTGTACTTATCAGTCTTGTTTATTGTACCATTGGATGCAATAATGCCATAATGGTCATGC] [+] EMBL CA765863 [ CTGTGATGGTAGAGTGTGCCTTGTTTCAGAAGCTGGGGAATTTTAATGGACCTAATAAGCAAAGGTACAGATCATTGATGTTCAATCTGAAGGATGATCACAACACAGACTTCCGGAGAAGGGTTCTTCTAGGACAAGTGCAGCCTGAGAGAATTGCTGACCTAACCCCGACAGAAATGGCTAGCGACACCAGGAAGCTTGAGAACAAGAAGATCGAGGAGAAGGCTCTGTTCGAGTGCGAGCGTGGAGGAGCACCGAAGGCCACCACTGATCGGTTCAAGTGTGGCAGGTGCGGCCAGCGCAAGACTACCTACTACCAGCTCCAGACTCGGAGCGCCGACGAGCCGATGACGACGTTCGTGACCAGCGTGAACTGCAACAATCACTGGAAGTTCTGCTAAGCTAGGCACATCCTACTGAGAAGTGTTAGTGTAGTTGACCCTGGAGTTTGACAGGCAGGTTAGTTTCGGGCCCTGCTTATCTGGGCCCGTTTCATCTTTTTTCCCCTTAAGTTAGCTTGTTCCGAATTCAATTTGTTCTAGTGCCATTCGACTGCATAATGGCCGGCCGTTGGGCTTGCATTGTCAGGCTACTGCTGTTGTACTTATCAGTCTTGTTTATTGTACCATTGGATGCAATAATGCCATAAT ] consensusID : consensus_4945#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 323 fasta sequence [ACCTGTTAGGACACTGGAAAAAGGTTGTCATTGAAGAAGACAAGAAAAATGGGGCACTGCAGAATGGAAAATCGAGTTCTACTGTGGTAAAGGTTGAGAAGGTGGAGCCTTCTCCAGAGTTTCTGAAGAGACTAGAAAGGATGACAGGGAGGAAGTNAGGAACATCATAGAAGAAGTAAAAGCATGTGACCCATTCAGGATTGCTGTGATGGTAGAGTGTGCCTTGTTTCAGAAGCTGGGGAATTTTAATGGACCTAATAAGCAAAGGTACAGATCATTGATGTTCAATCTGAAGGATGATCACAACACAGACTTCCGGAGAA] [+] EMBL OS1168A [ACCTGTTAGGACACTGGAAAAAGGTTGTCATTGAAGAAGACAAGAAAAATGGGGCACTGCAGAATGGAAAATCGAGTTCTACTGTGGTAAAGGTTGAGAAGGTGGAGCCTTCTCCAGAGTTTCTGAAGAGACTAGAAAGGATGACAGGGAGGAAGTNAGGAACATCATAGAAGAAGTAAAAGCATGTGACCCATTCAGGATTGCTGTGATGGTAGAGTGTGCCTTGTTTCAGAAGCTGGGGAATTTTAATGGACCTAATAAGCAAAGGTACAGATCATTGATGTTCAATCTGAAGGATGATCACAACACAGACTTCCGGAGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4945#0 ------------TCCTGTCCAAGGTGGTCCTCCAAGAC--TGACATCCGTTGTTAAATGT 46 consensus_4945#1 ACCTGTTAGGACACTGGAAAAAGGTTGTCATTGAAGAAGACAAGAAAAATGGGGCACTGC 60 * * ***** *** * **** * * * * * ** consensus_4945#0 GGTGATGCTAGTCGAGACAGAATTCGGGCGATACTT----GGTGATGCCTTCTCCAGAGT 102 consensus_4945#1 AGAATGGAAAATCGAGTTCTACTGTGGTAAAGGTTGAGAAGGTGGAGCCTTCTCCAGAGT 120 * * * ***** * * ** * * **** ************** consensus_4945#0 TTCTGAAGAGACTAGAAAGGATGACAGGGAGGAAGTGAGGAACATCATAGAAGAAGTAAA 162 consensus_4945#1 TTCTGAAGAGACTAGAAAGGATGACAGGGAGGAAGTNAGGAACATCATAGAAGAAGTAAA 180 ************************************ *********************** consensus_4945#0 AGCATGTGACCCATTCAGGATTGCTGTGATGGTAGAGTGTGCCTTGTTTCAGAAGCTGGG 222 consensus_4945#1 AGCATGTGACCCATTCAGGATTGCTGTGATGGTAGAGTGTGCCTTGTTTCAGAAGCTGGG 240 ************************************************************ consensus_4945#0 GAATTTTAATGGACCTAATAAGCAAAGGTACAGATCATTGATGTTCAATCTGAAGGATGA 282 consensus_4945#1 GAATTTTAATGGACCTAATAAGCAAAGGTACAGATCATTGATGTTCAATCTGAAGGATGA 300 ************************************************************ consensus_4945#0 TCACAACACAGACTTCCGGAGAAGGGTTCTTCTAGGACAAGTGCAGCCTGAGAGAATTGC 342 consensus_4945#1 TCACAACACAGACTTCCGGAGAA------------------------------------- 323 *********************** consensus_4945#0 TGACCTAACCCCGACAGAAATGGCTAGCGACACCAGGAAGCTTGAGAACAAGAAGATCGA 402 consensus_4945#1 ------------------------------------------------------------ consensus_4945#0 GGAGAAGGCTCTGTTCGAGTGCGAGCGTGGAGGAGCACCGAAGGCCACCACTGATCAGTT 462 consensus_4945#1 ------------------------------------------------------------ consensus_4945#0 CAAGTGTGGCAGGTGCGGCCAGCGCAAGACTACCTACTACCAGCTCCAGACTCGGAGCGC 522 consensus_4945#1 ------------------------------------------------------------ consensus_4945#0 CGACGAGCCGATGACGACGTTCGTGACCTGCGTGAACTGCAACAATCACTGGAAGTTCTG 582 consensus_4945#1 ------------------------------------------------------------ consensus_4945#0 CTAAGCTAGGCACATCCTACTGAGAAGTGTTAGTGTAGTTGACCCTGGAGTTTGACAGGC 642 consensus_4945#1 ------------------------------------------------------------ consensus_4945#0 AGGTTAGTTTCGGGCCCTGCTTATCTGGGCCCGTTTCATCTTTTTTCCCCTTAAGTTAGC 702 consensus_4945#1 ------------------------------------------------------------ consensus_4945#0 TTGTTCCGAATTCGATTTGTTCTAGTGCCATTTGACTGCATAATGGCCGGCCGTTGGGCT 762 consensus_4945#1 ------------------------------------------------------------ consensus_4945#0 TGCATTGTCAGGCTACTGCTGTTGTACTTATCAGTCTTGTTTATTGTACCATTGGATGCA 822 consensus_4945#1 ------------------------------------------------------------ consensus_4945#0 ATAATGCCATAATGGTCATGC 843 consensus_4945#1 --------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||