|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4946#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1877 fasta sequence
[CCGTCTCGCCGGTCTCCATCTCCATCACCGGAGAACAGCGATGTCGGCGACCTACTGCTTCCGCCGCATACTTTTGCCTTTCACTCCTCGCGCCCAGTCAATCTCCCCATCTCCTCGGCCTCGGCAATAGTATCCTCGCGAGTTCGCCCGCCGGCGCCAATCTCCATCCCGCGAGCAGCCGTGCCGGCGTCCTGCTGCTTCCGCCCCCGGTTTCCCCCAAAAAGAAATATATTTGGTGCCCCTGGCATCCGGTAGATCGGCATGCCAGCGGCCTTGGTGGCGTGCAGCGGCAAGCGCCGGCGGCGGACGGCCACCACTCATGCTGCTCGGGACTCATCGTCGTGGGCTTTTCTGGCGGAGGATCTGGTGAGCCTGATAGGCTGGCGGGTGCTGGCTGGAGATGTGCGAGACTACATCTGCTTCCGCGCCGCGTGCCACCACTGGCGCTCCTGCACCGCCAGCCCGTGCGGCCGCGGCGTTGTGGACCCACGCTTCCACCCGCGGCGGTGGATGATGCTCCCTGAGGGGAACGGTCTCTACCCGGGCCACGGCATGCTGCGTGGCTTCGTTCGCTTCTTCAACCTCTCCACCGGCGCTTTCGTCCGTCTCAAGCTGCCCATCGTCCGCGACCACCGCATCCTTGACTCCGTCGACGGAATCCTCCTCCTGCAGCGGAACCGTGACACCGCGGTCCGTCTTCTCCACCCCTTCACCGGCGACATCGTCGACTTCCCGCCGCTGGACACCTTGCTGCCGTACATGGGCCGCCGGTCGGAGGAATATCTCAGAGATGTCGCTGCTGCCTCCATAACATCATCAGCTGATGATCAAGCCGTCTTGCTTATGATATGGTTATTCCGCACGGTGCGCGTAGCCTTCGCCGCCTCTGGGGATAAGCAGTGGAGGGTGTCGAGCTGGTCCATGTACCAAGCCTATACTCCATTGCCATTCCAAGGCAAGCTATACATATTGGATCAAGCCACGGCTTATGGTGGACCTGAGGTCTTGCAGATAGACCCACCCCTGCAACTGCAACTGGAAGGGACGACGGAGCTCTCGCTACCACCACCAAAATCAATTGCTAAATGTCCAGCAAGGACACCTGACTCATTCTTTCTCTACCATTTGGTAGAATGTGACTCTGACATTCTGTTGGTCACCTTTGGTGTTAGTGTGTATGCACAAATTTCAGTTTACAGACTAGCTGATCTTATTTCGGGAACAACTGTCCCGGTGACTTGCATCGGCAGCAATTCCCTTTTCCTTGGTAATAGGAATCTCTGTGTCAGCTCCAAGGCGTTTCCTACCATTGTGGGTGATGCCATTGTGTTTTACCATCAGAAGGAGAATTATCTTGCACAATACCACCTCAGAAGCGGCACATTGTCACCCACATCAGATGGATGTATCTTTGCGACTAATATGCCAAGTCCTAGTAGCATCATTCACCATATCTACACCTGTTGCTTTCGTACACAATGGACCAAGGGACATTTATTGTTTCAAAGGGAGAACAGGGCATGGCAGATGAAACGGAAGTAGGGATAGACGGGGCGTAAACAACTCTTGTTTTGTGTTGGTGGTGGTGCCTGCCTGCCTGGTTTTCCTTCAGGGATATATTTGTTGATCTACAGGGGAAGTAGTTCCCGGGGGCTGTGAAAGTTTTGCTTTGGTACTTATAATCATGTTACTATTTATGTGACAAAGATGCTTCCCTCTGTTGTTGAATCAGGCAACTGTTTCATGTTGAAACAACTAAATTAATTATTGTAATTGGCATGGTATTTTCCAATGGAGTTATGTAACCCTGGCTTGTAAAGTTCTTGTGACAATTGATCAAACTTCCATCATCATAGTAGAATTCTAATATATCCTTA]
[+] EMBL AK103677 [CCGTCTCGCCGGTCTCCATCTCCATCACCGGAGAACAGCGATGTCGGCGACCTACTGCTTCCGCCGCATACTTTTGCCTTTCACTCCTCGCGCCCAGTCAATCTCCCCATCTCCTCGGCCTCGGCAATAGTATCCTCGCGAGTTCGCCCGCCGGCGCCAATCTCCATCCCGCGAGCAGCCGTGCCGGCGTCCTGCTGCTTCCGCCCCCGGTTTCCCCCAAAAAGAAATATATTTGGTGCCCCTGGCATCCGGTAGATCGGCATGCCAGCGGCCTTGGTGGCGTGCAGCGGCAAGCGCCGGCGGCGGACGGCCACCACTCATGCTGCTCGGGACTCATCGTCGTGGGCTTTTCTGGCGGAGGATCTGGTGAGCCTGATAGGCTGGCGGGTGCTGGCTGGAGATGTGCGAGACTACATCTGCTTCCGCGCCGCGTGCCACCACTGGCGCTCCTGCACCGCCAGCCCGTGCGGCCGCGGCGTTGTGGACCCACGCTTCCACCCGCGGCGGTGGATGATGCTCCCTGAGGGGAACGGTCTCTACCCGGGCCACGGCATGCTGCGTGGCTTCGTTCGCTTCTTCAACCTCTCCACCGGCGCTTTCGTCCGTCTCAAGCTGCCCATCGTCCGCGACCACCGCATCCTTGACTCCGTCGACGGAATCCTCCTCCTGCAGCGGAACCGTGACACCGCGGTCCGTCTTCTCCACCCCTTCACCGGCGACATCGTCGACTTCCCGCCGCTGGACACCTTGCTGCCGTACATGGGCCGCCGGTCGGAGGAATATCTCAGAGATGTCGCTGCTGCCTCCATAACATCATCAGCTGATGATCAAGCCGTCTTGCTTATGATATGGTTATTCCGCACGGTGCGCGTAGCCTTCGCCGCCTCTGGGGATAAGCAGTGGAGGGTGTCGAGCTGGTCCATGTACCAAGCCTATACTCCATTGCCATTCCAAGGCAAGCTATACATATTGGATCAAGCCACGGCTTATGGTGGACCTGAGGTCTTGCAGATAGACCCACCCCTGCAACTGCAACTGGAAGGGACGACGGAGCTCTCGCTACCACCACCAAAATCAATTGCTAAATGTCCAGCAAGGACACCTGACTCATTCTTTCTCTACCATTTGGTAGAATGTGACTCTGACATTCTGTTGGTCACCTTTGGTGTTAGTGTGTATGCACAAATTTCAGTTTACAGACTAGCTGATCTTATTTCGGGAACAACTGTCCCGGTGACTTGCATCGGCAGCAATTCCCTTTTCCTTGGTAATAGGAATCTCTGTGTCAGCTCCAAGGCGTTTCCTACCATTGTGGGTGATGCCATTGTGTTTTACCATCAGAAGGAGAATTATCTTGCACAATACCACCTCAGAAGCGGCACATTGTCACCCACATCAGATGGATGTATCTTTGCGACTAATATGCCAAGTCCTAGTAGCATCATTCACCATATCTACACCTGTTGCTTTCGTACACAATGGACCAAGGGACATTTATTGTTTCAAAGGGAGAACAGGGCATGGCAGATGAAACGGAAGTAGGGATAGACGGGGCGTAAACAACTCTTGTTTTGTGTTGGTGGTGGTGCCTGCCTGCCTGGTTTTCCTTCAGGGATATATTTGTTGATCTACAGGGGAAGTAGTTCCCGGGGGCTGTGAAAGTTTTGCTTTGGTACTTATAATCATGTTACTATTTATGTGACAAAGATGCTTCCCTCTGTTGTTGAATCAGGCAACTGTTTCATGTTGAAACAACTAAATTAATTATTGTAATTGGCATGGTATTTTCCAATGGAGTTATGTAACCCTGGCTTGTAAAGTTCTTGTGACAATTGATCAAACTTCCA ]
[+] EMBL AK106532 [ CGTCTCGCCGGTCTCCATCTCCATCACCGGAGAACAGCGATGTCGGCGACCTACTGCTTCCGCCGCATACTTTTGCCTTTCACTCCTCGCGCCCAGTCAATCTCCCCATCTCCTCGGCCTCGGCAATAGTATCCTCGCGAGTTCGCCCGCCGGCGCCAATCTCCATCCCGCGAGCAGCCGTGCCGGCGTCCTGCTGCTTCCGCCCCCGGTTTCCCCCAAAAAGAAATATATTTGGTGCCCCTGGCATCCGGTAGATCGGCATGCCAGCGGCCTTGGTGGCGTGCAGCGGCAAGCGCCGGCGGCGGACGGCCACCACTCATGCTGCTCGGGACTCATCGTCGTGGGCTTCCCTGGCGGAGGATCTGGTGAGCCTGATAGGCTGGCGGGTGCTGGCTGGAGATGTGCGAGACTACATCTGCTTCCGCGCCGCGTGCCACCACTGGCGCTCCTGCACCGCCAGCCCGTGCGGCCGCGGCGTTGTGGACCCACGCTTCCACCCGCGGCGGTGGATGATGCTCCCTGAGGGGAACGGTCTCTACCCGGGCCACGGCATGCTGCGTGGCTTCGTTCGCTTCTTCAACCTCTCCACCGGCGCTTTCGTCCGTCTCAAGCTGCCCATCGTCCGCGACCACCGCATCCTTGACTCCGTCGACGGAATCCTCCTCCTGCAGCGGAACCGTGACACCGCGGTCCGTCTTCTCCACCCCTTCACCGGCGACATCGTCGACTTCCCGCCGCTGGACACCTTGCTGCCGTACATGGGCCGCCGGTCGGAGGAATATCTCAGAGATGTCGCTGCTGCCTCCATAACATCATCAGCTGATGATCAAGCCGTCTTGCTTATGATATGGTTATTCCGCACGGTGCGCGTAGCCTTCGCCGCCTCTGGGGATAAGCAGTGGAGGGTGTCGAGCTGGTCCATGTACCAAGCCTATACTCCATTGCCATTCCAAGGCAAGCTATACATATTGGATCAAGCCACGGCTTATGGTGGACCTGAGGTCTTGCAGATAGACCCACCCCTGCAACTGCAACTGGAAGGGACGACGGAGCTCTCGCTACCACCACCAAAATCAATTGCTAAATGTCCAGCAAGGACACCTGACTCATTCTTTCTCTACCATTTGGTAGAATGTGACTCTGACATTCTGTTGGTCACCTTTGGTGTTAGTGTGTATGCACAAATTTCAGTTTACAGACTAGCTGATCTTATTTCGGGAACAACTGTCCCGGTGACTTGCATCGGCAGCAATTCCCTTTTCCTTGGTAATAGGAATCTCTGTGTCAGCTCCAAGGCGTTTCCTACCATTGTGGGTGATGCCATTGTGTTTTACCATCAGAAGGAGAATTATCTTGCACAATACCACCTCAGAAGCGGCACATTGTCACCCACATCAGATGGATGTATCTTTGCGACTAATATGCCAAGTCCTAGTAGCATCATTCACCATATCTACACCTGTTGCTTTCGTACACAATGGACCAAGGGACATTTATTGTTTCAAAGGGAGAACAGGGCATGGCAGATGAAACGGAAGTAGGGATAGACGGGGCGTAAACAACTCTTGTTTTGTGTTGGTGGTGGTGCCTGCCTGCCTGGTTTTCCTTCAGGGATATATTTGTTGATCTACAGGGGAAGTAGTTCCCGGTGGCTGTGAAAGTTTTGCTTTGGTACTTATAATCATGTTACTATTTATGTGACAAAGATGCTTCCCTCTGTTGTTGAATCAGGCAACTGTTTCATGTTGAAACAACTAAATTAATTATTGTAATTGGCATGGTATTTTCCAATGGAGTTATGTAACCCTGGCTTGTAAAGTTCTTGTGACAATTGATCAAACTTCCATCATCATAGTAGAATTCTAATATATCCTTA]
consensusID : consensus_4946#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 164 fasta sequence
[CATGTTGAAACAACTAAATTAATTATTGTAATTGGCATGGTATTTTCCAATGGAGTTATGTAACCCTGGCTTGTAAAGTTCTTGTGACAATTGATCAAACTTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CF332264 [CATGTTGAAACAACTAAATTAATTATTGTAATTGGCATGGTATTTTCCAATGGAGTTATGTAACCCTGGCTTGTAAAGTTCTTGTGACAATTGATCAAACTTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4946#0 CCGTCTCGCCGGTCTCCATCTCCATCACCGGAGAACAGCGATGTCGGCGACCTACTGCTT 60
consensus_4946#1 ------------------------------------------------------------
consensus_4946#0 CCGCCGCATACTTTTGCCTTTCACTCCTCGCGCCCAGTCAATCTCCCCATCTCCTCGGCC 120
consensus_4946#1 ------------------------------------------------------------
consensus_4946#0 TCGGCAATAGTATCCTCGCGAGTTCGCCCGCCGGCGCCAATCTCCATCCCGCGAGCAGCC 180
consensus_4946#1 ------------------------------------------------------------
consensus_4946#0 GTGCCGGCGTCCTGCTGCTTCCGCCCCCGGTTTCCCCCAAAAAGAAATATATTTGGTGCC 240
consensus_4946#1 ------------------------------------------------------------
consensus_4946#0 CCTGGCATCCGGTAGATCGGCATGCCAGCGGCCTTGGTGGCGTGCAGCGGCAAGCGCCGG 300
consensus_4946#1 ------------------------------------------------------------
consensus_4946#0 CGGCGGACGGCCACCACTCATGCTGCTCGGGACTCATCGTCGTGGGCTTTTCTGGCGGAG 360
consensus_4946#1 ------------------------------------------------------------
consensus_4946#0 GATCTGGTGAGCCTGATAGGCTGGCGGGTGCTGGCTGGAGATGTGCGAGACTACATCTGC 420
consensus_4946#1 ------------------------------------------------------------
consensus_4946#0 TTCCGCGCCGCGTGCCACCACTGGCGCTCCTGCACCGCCAGCCCGTGCGGCCGCGGCGTT 480
consensus_4946#1 ------------------------------------------------------------
consensus_4946#0 GTGGACCCACGCTTCCACCCGCGGCGGTGGATGATGCTCCCTGAGGGGAACGGTCTCTAC 540
consensus_4946#1 ------------------------------------------------------------
consensus_4946#0 CCGGGCCACGGCATGCTGCGTGGCTTCGTTCGCTTCTTCAACCTCTCCACCGGCGCTTTC 600
consensus_4946#1 ------------------------------------------------------------
consensus_4946#0 GTCCGTCTCAAGCTGCCCATCGTCCGCGACCACCGCATCCTTGACTCCGTCGACGGAATC 660
consensus_4946#1 ------------------------------------------------------------
consensus_4946#0 CTCCTCCTGCAGCGGAACCGTGACACCGCGGTCCGTCTTCTCCACCCCTTCACCGGCGAC 720
consensus_4946#1 ------------------------------------------------------------
consensus_4946#0 ATCGTCGACTTCCCGCCGCTGGACACCTTGCTGCCGTACATGGGCCGCCGGTCGGAGGAA 780
consensus_4946#1 ------------------------------------------------------------
consensus_4946#0 TATCTCAGAGATGTCGCTGCTGCCTCCATAACATCATCAGCTGATGATCAAGCCGTCTTG 840
consensus_4946#1 ------------------------------------------------------------
consensus_4946#0 CTTATGATATGGTTATTCCGCACGGTGCGCGTAGCCTTCGCCGCCTCTGGGGATAAGCAG 900
consensus_4946#1 ------------------------------------------------------------
consensus_4946#0 TGGAGGGTGTCGAGCTGGTCCATGTACCAAGCCTATACTCCATTGCCATTCCAAGGCAAG 960
consensus_4946#1 ------------------------------------------------------------
consensus_4946#0 CTATACATATTGGATCAAGCCACGGCTTATGGTGGACCTGAGGTCTTGCAGATAGACCCA 1020
consensus_4946#1 ------------------------------------------------------------
consensus_4946#0 CCCCTGCAACTGCAACTGGAAGGGACGACGGAGCTCTCGCTACCACCACCAAAATCAATT 1080
consensus_4946#1 ------------------------------------------------------------
consensus_4946#0 GCTAAATGTCCAGCAAGGACACCTGACTCATTCTTTCTCTACCATTTGGTAGAATGTGAC 1140
consensus_4946#1 ------------------------------------------------------------
consensus_4946#0 TCTGACATTCTGTTGGTCACCTTTGGTGTTAGTGTGTATGCACAAATTTCAGTTTACAGA 1200
consensus_4946#1 ------------------------------------------------------------
consensus_4946#0 CTAGCTGATCTTATTTCGGGAACAACTGTCCCGGTGACTTGCATCGGCAGCAATTCCCTT 1260
consensus_4946#1 ------------------------------------------------------------
consensus_4946#0 TTCCTTGGTAATAGGAATCTCTGTGTCAGCTCCAAGGCGTTTCCTACCATTGTGGGTGAT 1320
consensus_4946#1 ------------------------------------------------------------
consensus_4946#0 GCCATTGTGTTTTACCATCAGAAGGAGAATTATCTTGCACAATACCACCTCAGAAGCGGC 1380
consensus_4946#1 ------------------------------------------------------------
consensus_4946#0 ACATTGTCACCCACATCAGATGGATGTATCTTTGCGACTAATATGCCAAGTCCTAGTAGC 1440
consensus_4946#1 ------------------------------------------------------------
consensus_4946#0 ATCATTCACCATATCTACACCTGTTGCTTTCGTACACAATGGACCAAGGGACATTTATTG 1500
consensus_4946#1 ------------------------------------------------------------
consensus_4946#0 TTTCAAAGGGAGAACAGGGCATGGCAGATGAAACGGAAGTAGGGATAGACGGGGCGTAAA 1560
consensus_4946#1 ------------------------------------------------------------
consensus_4946#0 CAACTCTTGTTTTGTGTTGGTGGTGGTGCCTGCCTGCCTGGTTTTCCTTCAGGGATATAT 1620
consensus_4946#1 ------------------------------------------------------------
consensus_4946#0 TTGTTGATCTACAGGGGAAGTAGTTCCCGGGGGCTGTGAAAGTTTTGCTTTGGTACTTAT 1680
consensus_4946#1 ------------------------------------------------------------
consensus_4946#0 AATCATGTTACTATTTATGTGACAAAGATGCTTCCCTCTGTTGTTGAATCAGGCAACTGT 1740
consensus_4946#1 ------------------------------------------------------------
consensus_4946#0 TTCATGTTGAAACAACTAAATTAATTATTGTAATTGGCATGGTATTTTCCAATGGAGTTA 1800
consensus_4946#1 --CATGTTGAAACAACTAAATTAATTATTGTAATTGGCATGGTATTTTCCAATGGAGTTA 58
**********************************************************
consensus_4946#0 TGTAACCCTGGCTTGTAAAGTTCTTGTGACAATTGATCAAACTTCCATCATCATAGTAGA 1860
consensus_4946#1 TGTAACCCTGGCTTGTAAAGTTCTTGTGACAATTGATCAAACTTCCAAAAAAAAAAAAAA 118
*********************************************** * * * * *
consensus_4946#0 ATTCTAATATATCCTTA----------------------------- 1877
consensus_4946#1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 164
* ** * * *
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||