These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4952#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1332 fasta sequence [AGCCATGGCCATTCAGAAAACTGAAGAGCAGCATTCAGCATTTTTCCATTTGCAGGGGATATGATGTTTGGCTATACATGCACTTGCGCATAATGCACATGTCGCCAGACAGGCCCTAACTCAAAAGCAGATCACAGAGCGCCGTCGTCGTCGTGACTCGTCCCCTCCACTTACTAGCCGAGACTAAGTGTTCGACATGCGCGCACTGGTGAACTGCTGCCATGGCGCGGATCACGTACGCGTACTCCATCATGCGCCGATTTGATAGAAGAGAGCGAGCGCGGCGAGAACGAGGGTGCCCAAGCCGCAGCACGACAGCACCGCCGCCGCGACCGCCACGCTCGCCTTCCTCGCCGGCGCCACGGAGGCCACCACCCCCAGGCTCACCGCGCCGACGAACGCCGACGTCAGGAAGAACGTGCACACCTTCAGCTGCGCCTTGCCCACCGCGCCGCCGAGCAGCCCGCCGAACACGGCAAGCACGGCCCCGAACGACACCGACGCCACCGCCACGGCGATGGCGTACATCGTCCCCAGCTCGGACTTCCCGTCCTCCTCCTCCTCCTCGCCTACCGCCGCGGTGCAGAACTCGATGAACGCCCACGCGGCGGCTCCGGCGACCACTGGGAAGACGACGGCCGGCAACAGGAGCCCGTGAAGGATTGTCGCGGCGATCAGCAGCAGCGCCGGCACCAGCATCGCGAGCATGACGACGTTCGCGATGGCTAGTACAGTCTTCTGCCACCATATCCCCGACGGCGACTGGCGGCGGCGCCGGTGAACTTCACTGTTGGACAGCAGCCTGCAAAGGAGCAGCGCCAAGATTCCGGCCAGACCGGAACCAAGCATGAAGAAGATCGACACCTTGGCGTATGAATACTGACCACCCAATTTCTCTGTCTTGTGATAGATTCCAAGGAGATCTCCAATAAAACCAGAGAATGATGTGGTCACCAAAGATAAGTGAAAGACACCAACAAGGATGGAAGGGACCAATGAAATGGGCAGGAAGTAATAAGCCTTAGGAAGCAGAGAACAAGTGATGGAAATAAATGACAAAATAAGGGAGGATATGGAGGTAGCCAAGAGGACTATGGAAAGTTTCAGCTGGTTGATGGCGCTGATGATGTGCTCTGGCTTGATTGTCATCAACTTCAGGGTGTGGAACATGAGGGAAATTGCGGTGACAAAGGCTGTGAATGCAAAGGAGGAGGCAAATTTCAGTCCGAGTGGAAGTTTGAGTGCATCTCCACGAAGAAATAGAATGTCAATCAGGGGGACTGTAGAGATTGTGACGAGGAGCAATGCAAATTTCAGATTCTTGGGGGCAAA] [+] EMBL AK066949 [AGCCATGGCCATTCAGAAAACTGAAGAGCAGCATTCAGCATTTTTCCATTTGCAGGGGATATGATGTTTGGCTATACATGCACTTGCGCATAATGCACATGTCGCCAGACAGGCCCTAACTCAAAAGCAGATCACAGAGCGCCGTCGTCGTCGTGACTCGTCCCCTCCACTTACTAGCCGAGACTAAGTGTTCGACATGCGCGCACTGGTGAACTGCTGCCATGGCGCGGATCACGTACGCGTACTCCATCATGCGCCGATTTGATAGAAGAGAGCGAGCGCGGCGAGAACGAGGGTGCCCAAGCCGCAGCACGACAGCACCGCCGCCGCGACCGCCACGCTCGCCTTCCTCGCCGGCGCCACGGAGGCCACCACCCCCAGGCTCACCGCGCCGACGAACGCCGACGTCAGGAAGAACGTGCACACCTTCAGCTGCGCCTTGCCCACCGCGCCGCCGAGCAGCCCGCCGAACACGGCAAGCACGGCCCCGAACGACACCGACGCCACCGCCACGGCGATGGCGTACATCGTCCCCAGCTCGGACTTCCCGTCCTCCTCCTCCTCCTCGCCTACCGCCGCGGTGCAGAACTCGATGAACGCCCACGCGGCGGCTCCGGCGACCACTGGGAAGACGACGGCCGGCAACAGGAGCCCGTGAAGGATTGTCGCGGCGATCAGCAGCAGCGCCGGCACCAGCATCGCGAGCATGACGACGTTCGCGATGGCTAGTACAGTCTTCTGCCACCATATCCCCGACGGCGACTGGCGGCGGCGCCGGTGAACTTCACTGTTGGACAGCAGCCTGCAAAGGAGCAGCGCCAAGATTCCGGCCAGACCGGAACCAAGCATGAAGAAGATCGACACCTTGGCGTATGAATACTGACCACCCAATTTCTCTGTCTTGTGATAGATTCCAAGGAGATCTCCAATAAAACCAGAGAATGATGTGGTCACCAAAGATAAGTGAAAGACACCAACAAGGATGGAAGGGACCAATGAAATGGGCAGGAAGTAATAAGCCTTAGGAAGCAGAGAACAAGTGATGGAAATAAATGACAAAATAAGGGAGGATATGGAGGTAGCCAAGAGGACTATGGAAAGTTTCAGCTGGTTGATGGCGCTGATGATGTGCTCTGGCTTGATTGTCATCAACTTCAGGGTGTGGAACATGAGGGAAATTGCGGTGACAAAGGCTGTGAATGCAAAGGAGGAGGCAAATTTCAGTCCGAGTGGAAGTTTGAGTGCATCTCCACGAAGAAATAGAATGTCAATCAGGGGGACTGTAGAGATTGTGACGAGGAGCAATGCAAATTTCAGATTCTTGGGGGCAAA] consensusID : consensus_4952#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 439 fasta sequence [GACTTGGGCGGCGCCGGTGAACTTCACTGTTGGACAAGCAGCCTGCAAAGGAGCAGCGCCCAAGATTCCGGCCAGACCGGAACCAAGCATGAAGAAGATCGACACCTTGGCGTATGAATACTGACCCACCCAATTTCTCTGTCTTGTGATAGATTCCAAGGAGATCTCCAATAAAACCAGAGAATGATGTGGTCACCAAAGATAAGGTGAGCTGATTTGCACTCTTTAGTGCTTTCTTCAGAGCTTTACTCTCTTCAGGCCTTACATCTCTCACATCGAATTTGCCATTATATATGAAGTGAAAGACACCAACAAGGATGGAAGGGACCAATGAAATGGGCAGGAAGTAATAAGCCTTAGGAAGCAGAGAACAAGTGATGGAAATAAATGACAAAATAAGGGAGGATATGGAGGTAGCCAAGAGGACTATGGAAAGTTT] [-] EMBL C25876 [GACTTGGGCGGCGCCGGTGAACTTCACTGTTGGACAAGCAGCCTGCAAAGGAGCAGCGCCCAAGATTCCGGCCAGACCGGAACCAAGCATGAAGAAGATCGACACCTTGGCGTATGAATACTGACCCACCCAATTTCTCTGTCTTGTGATAGATTCCAAGGAGATCTCCAATAAAACCAGAGAATGATGTGGTCACCAAAGATAAGGTGAGCTGATTTGCACTCTTTAGTGCTTTCTTCAGAGCTTTACTCTCTTCAGGCCTTACATCTCTCACATCGAATTTGCCATTATATATGAAGTGAAAGACACCAACAAGGATGGAAGGGACCAATGAAATGGGCAGGAAGTAATAAGCCTTAGGAAGCAGAGAACAAGTGATGGAAATAAATGACAAAATAAGGGAGGATATGGAGGTAGCCAAGAGGACTATGGAAAGTTT] consensusID : consensus_4952#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 424 fasta sequence [TTTTTTTTTTTTTCTCCTCCCTAATCCACCAAATTAGTTTCTACAACATTAATTAATAACTTCCGAATGAACATGTCTCGATTATTTATTTACAAGCATCACAGTTGATGACCGTGAGAGAGTACATTAACATTATATTCCTGCCATCACAGTACTAACCCCTTNTTTCTTGGGTTCAATTTAGGTTTCTTTTCCCCCCTTTTGTATCGATTTGATATCTTGAAATGCATCGCATGCCTCCTTCAGATCACAGAGCGCCGTCGTCGTCGTGACTCGTCCCCTCCACTTACTAGCCGAGACTAAGTGTTCGACATGCGCGCACTGGTGAACTGCTGCCATGGCGCGGATCACGTACGCGTACTCCATCATGCGCCGATTTGATAGAAGAGAGCGAGCGCGGCGAGAACGAGGGTGCCCAAGCCGN] [-] EMBL AU166312 [TTTTTTTTTTTTTCTCCTCCCTAATCCACCAAATTAGTTTCTACAACATTAATTAATAACTTCCGAATGAACATGTCTCGATTATTTATTTACAAGCATCACAGTTGATGACCGTGAGAGAGTACATTAACATTATATTCCTGCCATCACAGTACTAACCCCTTNTTTCTTGGGTTCAATTTAGGTTTCTTTTCCCCCCTTTTGTATCGATTTGATATCTTGAAATGCATCGCATGCCTCCTTCAGATCACAGAGCGCCGTCGTCGTCGTGACTCGTCCCCTCCACTTACTAGCCGAGACTAAGTGTTCGACATGCGCGCACTGGTGAACTGCTGCCATGGCGCGGATCACGTACGCGTACTCCATCATGCGCCGATTTGATAGAAGAGAGCGAGCGCGGCGAGAACGAGGGTGCCCAAGCCGN] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4952#0 AGCCATGGCCATTCAGAAAACTGAAGAGCAGCATTCAGCATTTTTCCATTTGCAGGGGAT 60 consensus_4952#1 ------------------------------------------------------------ consensus_4952#2 ------------------------------------------------------------ consensus_4952#0 ATGATGTTTGGCTATACATGCACTTGCGCATAATGCACATGTCGCCAGACAGGCCCTAAC 120 consensus_4952#1 ------------------------------------------------------------ consensus_4952#2 ------------------------------------------------------------ consensus_4952#0 TCAAAAGCAGATCACAGAGCGCCGTCGTCGTCGTGACTCGTCCCCTCCACTTACTAGCCG 180 consensus_4952#1 ------------------------------------------------------------ consensus_4952#2 ------------------------------------------------------------ consensus_4952#0 AGACTAAGTGTTCGACATGCGCGCACTGGTGAACTGCTGCCATGGCGCGGATCACGTACG 240 consensus_4952#1 ------------------------------------------------------------ consensus_4952#2 ------------------------------------------------------------ consensus_4952#0 CGTACTCCATCATGCGCCGATTTGATAGAAGAGAGCGAGCGCGGCGAGAACGAGGGTGCC 300 consensus_4952#1 ------------------------------------------------------------ consensus_4952#2 ------------------------------------------------------------ consensus_4952#0 CAAGCCGCAGCACGACAGCACCGCCGCCGCGACCGCCACGCTCGCCTTCCTCGCCGGCGC 360 consensus_4952#1 ------------------------------------------------------------ consensus_4952#2 ------------------------------------------------------------ consensus_4952#0 CACGGAGGCCACCACCCCCAGGCTCACCGCGCCGACGAACGCCGACGTCAGGAAGAACGT 420 consensus_4952#1 ------------------------------------------------------------ consensus_4952#2 ------------------------------------------------------------ consensus_4952#0 GCACACCTTCAGCTGCGCCTTGCCCACCGCGCCGCCGAGCAGCCCGCCGAACACGGCAAG 480 consensus_4952#1 ------------------------------------------------------------ consensus_4952#2 ------------------------------------------------------------ consensus_4952#0 CACGGCCCCGAACGACACCGACGCCACCGCCACGGCGATGGCGTACATCGTCCCCAGCTC 540 consensus_4952#1 ------------------------------------------------------------ consensus_4952#2 ------------------------------------------------------------ consensus_4952#0 GGACTTCCCGTCCTCCTCCTCCTCCTCGCCTACCGCCGCGGTGCAGAACTCGATGAACGC 600 consensus_4952#1 ------------------------------------------------------------ consensus_4952#2 ------------------------------------------------------------ consensus_4952#0 CCACGCGGCGGCTCCGGCGACCACTGGGAAGACGACGGCCGGCAACAGGAGCCCGTGAAG 660 consensus_4952#1 ------------------------------------------------------------ consensus_4952#2 ------------------------------------------------------------ consensus_4952#0 GATTGTCGCGGCGATCAGCAGCAGCGCCGGCACCAGCATCGCGAGCATGACGACGTTCGC 720 consensus_4952#1 ------------------------------------------------------------ consensus_4952#2 ------------------------------------------------------------ consensus_4952#0 GATGGCTAGTACAGTCTTCTGCCACCATATCCCCGACGGCGACTGGCGGCGGCGCCGGTG 780 consensus_4952#1 ----------------------------------------GACTTG-GGCGGCGCCGGTG 19 consensus_4952#2 -----------------------------------------------TTTTTTTTTTTTT 13 * consensus_4952#0 AACTTCACTGTTGGAC--A-GCAGCCTGCAAAGGAGCAGCGCC-AAGATTC---CGGCCA 833 consensus_4952#1 AACTTCACTGTTGGAC--AAGCAGCCTGCAAAGGAGCAGCGCCCAAGATTC---CGGCCA 74 consensus_4952#2 CTCCTCCCTAATCCACCAAATTAGTTTCTACAACATTAATTAATAACTTCCGAATGAACA 73 * ** ** * ** * ** * * * * * ** * * * ** consensus_4952#0 GACCGGAACCAAGCATGAAGAAGATCGACACCT--TGGC-GTATGAATACTGACC-ACCC 889 consensus_4952#1 GACCGGAACCAAGCATGAAGAAGATCGACACCT--TGGC-GTATGAATACTGACCCACCC 131 consensus_4952#2 TGTCTCGATTATTTATTTACAAGCATCACAGTTGATGACCGTGAGAGAGTACATTAACAT 133 * * * ** * *** *** * ** * ** ** * ** consensus_4952#0 AATTTCTCTGTC-TTGTGATAGATTCCAAGGAGATCTCCAATAAAACCAGAGAATGATGT 948 consensus_4952#1 AATTTCTCTGTC-TTGTGATAGATTCCAAGGAGATCTCCAATAAAACCAGAGAATGATGT 190 consensus_4952#2 TATATTCCTGCCATCACAGTACTAACCCCTTNTTTCTTGGGTTCAATTTAGGTTTCTTTT 193 ** * *** * * ** ** *** * ** * * * * consensus_4952#0 GGTCACCAAAGATAAGTGAAAGACACCAACAAGGATGGAAGGGACCAATGAAATGGGCAG 1008 consensus_4952#1 GGTCACCAAAGATAAGGTGAGCTGATTTGCACTCTTT--AGTGCTTTCTTCAGAGCTTTA 248 consensus_4952#2 CCCCCCTTTTGTATCGATTTGATATCTTGAAATGCATCGCATGCCTCCTTCAGATCACAG 253 * * * * * * * * consensus_4952#0 GAAGTAATAAGCCTTAGGAAGCAGAGAACAAGTGATGGAAATAAATGACAAAATAAGGGA 1068 consensus_4952#1 CTCTCTTCAGGCCTTACATCTCTCACATCGAATT-TGCCATTATAT-ATGAAGTGAAAGA 306 consensus_4952#2 AGCGCCGTCGTCGTCGTGACTCGTCCCCTCCACT-TACTAGCCGAG-ACTAAGTGTTCGA 311 * * * * * * * ** * ** consensus_4952#0 GGATATGGAGGTAGCCAAGAGGACTATGGAAAGTTTCAGCTGGTTGATGGCGCTGATGAT 1128 consensus_4952#1 CACCAACAAGGATG--GAAGGGACCAATGAAATGGGCAGGAAGTAATAAGCCTTAGGAAG 364 consensus_4952#2 CAT--GCGCGCACT---GGTGAACTGCTGCCATGGCGCGGATCACGTACGCGTACTCCAT 366 * * ** * * * ** * consensus_4952#0 GTGCTCTGGCTT-GATTGTCATCAACTTCAGGGTGTGGAACATGAGGGAAATTGCGGTGA 1187 consensus_4952#1 CAGAGAACAAGT-GATGGAAATAAATGACAAAATAAGGGAGGATATGGAGGTAGCCAAGA 423 consensus_4952#2 CATGCGCCGATTTGATAGAAGAGAGCG----AGCGCGGCGAGA-ACGAGGGTGCCCAAGC 421 * *** * * ** * * * * * consensus_4952#0 CAAAGGCTGTGAATGCAAAGGAGGAGGCAAATTTCAGTCCGAGTGGAAGTTTGAGTGCAT 1247 consensus_4952#1 GGACTATGGAAAGTTT-------------------------------------------- 439 consensus_4952#2 CGN--------------------------------------------------------- 424 consensus_4952#0 CTCCACGAAGAAATAGAATGTCAATCAGGGGGACTGTAGAGATTGTGACGAGGAGCAATG 1307 consensus_4952#1 ------------------------------------------------------------ consensus_4952#2 ------------------------------------------------------------ consensus_4952#0 CAAATTTCAGATTCTTGGGGGCAAA 1332 consensus_4952#1 ------------------------- consensus_4952#2 ------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||