cluster # 4961

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Oryza sativa
cluster # 4961 cluster # 4961 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4961#0 length = 605 sequences # 2

consensus_4961#1 length = 491 sequences # 1

consensusID : consensus_4961#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 605
fasta sequence

                              [TGCCTTACGCGGCGACTCCCTTCGGGATTCTGTCCCATCCTTCATCTACTGCCCGTGCCCGTGCCTCTTACTCCTCCTGCCGCTCCAAACTCTTCATTGGCGGTCTTTCTTACGATACAAATGAGACTGCTCTCAAGGATGCTTTCTCTCAGCATGGCCATATTATTCAAGTGAAGGTAATATGCCACCCAGTGACAGGGAAATCCAAAGGGTATGGCTTTGTCAAGTTTGCCTCAGAAGATGAAGCTGCTGCAGCATTGCACAAGATGGGGGGTGAGGTGATTGATGGAAGGAACATAAGGGTACACTATGCAAACAGCGGATGATCTGGTGCCACTTCTTCTTGGAGGAGTAAGTGTCTTGTCTTGTGTCGGGGTGCATGGAGAGCTCAACTAAGGCATGTATTTGTAGATATGTAGTCTTTCGTTTTCATGGCTAGCAATATGCACCTCTGCATATGTGGGTTTCAATCTTGTCCCATCTCCCCAATACACAAGTCATTTGATATATCATCTAAACATTTATTCTGTATTCTGCTGAATTTAGACAACTGGAATATATCAAAGCAAGCTTAATTTCCCCCAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL CA757906             [TGCCTTACGCGGCGACTCCCTTCGGGATTCTGTCCCATCCTTCATCTACTGCCCGTGCCCGTGCCTCTTACTCCTCCTGCCGCTCCAAACTCTTCATTGGCGGTCTTTCTTACGATACAAATGAGACTGCTCTCAAGGATGCTTTCTCTCAGCATGGCCATATTATTCAAGTGAAGGTAATATGCCACCCAGTGACAGGGAAATCCAAAGGGTATGGCTTTGTCAAGTTTGCCTCAGAAGATGAAGCTGCTGCAGCATTGCACAAGATGGGGGGTGAGGTGATTGATGGAAGGAACATAAGGGTACACTATGCAAACAGCGGATGATCTGGTGCCACTTCTTCTTGGAGGAGTAAGTGTCTTGTCTTGTGTCGGGGTGCATGGAGAGCTCAACTAAGGCATGTATTTGTAGATATGTAGTCTTTCGTTTTCATGGCTAGCAATATGCACCTCTGCATATGTGGGTTTCAATCTTGTCCCATCTCCCCAATACACAAGTCATTTGATATATCATCTAAACATTTATTCTGTATTCTGCTGAATTTAGACAACTGGAATATATCAAAGCAAGCTTAATTTCCCCCAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL BU672810             [  CCTTACGCGGCGACTCCCTTCGGGATTCTGTCCCATCCTTCATCTACTGCCCGTGCCCGTGCCTCTTCCTCCTCCTGCCGCTCCAAACTCTTCATTGGCGGTCTTTCTTACGATACAAATGAGACTGCTCTCAAGGATGCTTTCTCTCAGCATGGCCATATTATTCAAGTGAAGGTAATATGCCACCCAGTGACAGGGAAATCCAAAGGGTATGGCTTTGTCAAGTTTGCCTCAGAAGATGAAGCTGCTGCAGCATTGCACAAGATGGGGGGTGAGGTGATTGATGGAAGGAACATAAGGGTACACTATGCAAACAGCGGATGATCTGGTGCCACTTCTTCTTGGAGGAGTAAGTGTCTTGTCTTGTGTCGGGGTGCATGGAGAGCTCAACTAAGGCATGTATTTGTAGATATGTAGTCTTTCGTTTTCATGGCTAGCAATATGCACCTCTGCATATGTGGGTTTCAATCTTGTCCCATCTCCCCAATACACAAGTCATTTGATATATCATCTAAACATTTATTCTGTATTCTGCTGAATTTAGACAACTGGAATATATCAAAGCAAG                                   ]




>consensus_4961#0
TGCCTTACGCGGCGACTCCCTTCGGGATTCTGTCCCATCCTTCATCTACTGCCCGTGCCC
GTGCCTCTTACTCCTCCTGCCGCTCCAAACTCTTCATTGGCGGTCTTTCTTACGATACAA
ATGAGACTGCTCTCAAGGATGCTTTCTCTCAGCATGGCCATATTATTCAAGTGAAGGTAA
TATGCCACCCAGTGACAGGGAAATCCAAAGGGTATGGCTTTGTCAAGTTTGCCTCAGAAG
ATGAAGCTGCTGCAGCATTGCACAAGATGGGGGGTGAGGTGATTGATGGAAGGAACATAA
GGGTACACTATGCAAACAGCGGATGATCTGGTGCCACTTCTTCTTGGAGGAGTAAGTGTC
TTGTCTTGTGTCGGGGTGCATGGAGAGCTCAACTAAGGCATGTATTTGTAGATATGTAGT
CTTTCGTTTTCATGGCTAGCAATATGCACCTCTGCATATGTGGGTTTCAATCTTGTCCCA
TCTCCCCAATACACAAGTCATTTGATATATCATCTAAACATTTATTCTGTATTCTGCTGA
ATTTAGACAACTGGAATATATCAAAGCAAGCTTAATTTCCCCCAAAAAAAAAAAAAAAAA
AAAAA

consensusID : consensus_4961#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 491
fasta sequence

                              [ATTGATTGCAAGTGGAACGTGAATATGGCCACCCCAGTGGAAACGGGAAATGCCTAATGGGTATGGGCTTGTGTGCAAGTTTGGCCTGCAGGAAAGATGGAATGCTGTGCTGCATGCATTGCACCACAGATGGGGGGTGTAGTGGTGTATTGGATGGGAAGGAACTATGAATGGGTGACACCTGATGCGCCAACACGCGGATGGATGCTGGGTGGCCACTTGCTTGTTGGGAGGAGTGAAGTGTGCTTGTGCTTGGTGTGCGGGGTGCATGGGAGAGCTGCAACTGAAGGGCATGTGATTTGTGAGATATGTGAGTGCTTTCGTTGTTGCAGGGCTAGCAATGATGCACCTGCTGGCATGATGTGGGGTGTTGCAATGCTGTGGTGCCCATGCTGCCCCAATGACACAAGTGCATGTTGATATATCATCTAAACATTTATTCTGTATTCTGCTGAATTTAGACTTACTGGAATATATCTAAGCAAGCTTAA]

[-] EMBL CB966208             [ATTGATTGCAAGTGGAACGTGAATATGGCCACCCCAGTGGAAACGGGAAATGCCTAATGGGTATGGGCTTGTGTGCAAGTTTGGCCTGCAGGAAAGATGGAATGCTGTGCTGCATGCATTGCACCACAGATGGGGGGTGTAGTGGTGTATTGGATGGGAAGGAACTATGAATGGGTGACACCTGATGCGCCAACACGCGGATGGATGCTGGGTGGCCACTTGCTTGTTGGGAGGAGTGAAGTGTGCTTGTGCTTGGTGTGCGGGGTGCATGGGAGAGCTGCAACTGAAGGGCATGTGATTTGTGAGATATGTGAGTGCTTTCGTTGTTGCAGGGCTAGCAATGATGCACCTGCTGGCATGATGTGGGGTGTTGCAATGCTGTGGTGCCCATGCTGCCCCAATGACACAAGTGCATGTTGATATATCATCTAAACATTTATTCTGTATTCTGCTGAATTTAGACTTACTGGAATATATCTAAGCAAGCTTAA]




>consensus_4961#1
ATTGATTGCAAGTGGAACGTGAATATGGCCACCCCAGTGGAAACGGGAAATGCCTAATGG
GTATGGGCTTGTGTGCAAGTTTGGCCTGCAGGAAAGATGGAATGCTGTGCTGCATGCATT
GCACCACAGATGGGGGGTGTAGTGGTGTATTGGATGGGAAGGAACTATGAATGGGTGACA
CCTGATGCGCCAACACGCGGATGGATGCTGGGTGGCCACTTGCTTGTTGGGAGGAGTGAA
GTGTGCTTGTGCTTGGTGTGCGGGGTGCATGGGAGAGCTGCAACTGAAGGGCATGTGATT
TGTGAGATATGTGAGTGCTTTCGTTGTTGCAGGGCTAGCAATGATGCACCTGCTGGCATG
ATGTGGGGTGTTGCAATGCTGTGGTGCCCATGCTGCCCCAATGACACAAGTGCATGTTGA
TATATCATCTAAACATTTATTCTGTATTCTGCTGAATTTAGACTTACTGGAATATATCTA
AGCAAGCTTAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4961#0      TGCCTTACGCGGCGACTCCCTTCGGGATTCTGTCCCATCCTTCATCTACTGCCCGTGCCC 60
consensus_4961#1      ------------------------------------------------------------
                                                                                  

consensus_4961#0      GTGCCTCTTACTCCTCCTGCCGCTCCAAACTCTTCATTGGCGGTCTTTCTTACGATACAA 120
consensus_4961#1      -------------------------------------------------ATTGATTGCAA 11
                                                                        *    * ***

consensus_4961#0      ATGAGACTGCTCTCAAGGATGCTTTCTCTCAGCATGGCCATATTATTCAAGTGAAGG-TA 179
consensus_4961#1      GTGGAAC-GTGAATATGGCCACCCCAGTGGAAACGGGAAATGCCTAATGGGTATGGGCTT 70
                       **  ** *     * **   *        *    **  **         **   ** * 

consensus_4961#0      ATATGCCACCCAG--TGACAGGGAAATCCAAAGGGTATGGCTTTGTCAAGTTTGCCTCAG 237
consensus_4961#1      GTGTGCAAGTTTGGCCTGCAGGAAAGATGGAATGCTGTG-CTGCATGCATTGCACCACAG 129
                       * *** *    *     **** **     ** * * ** **   *  * *   ** ***

consensus_4961#0      AAGATGAAGCTGCTGCAGCATTGCACAAGATGGGGGGTGAGGTGATTGATGGAAGGAACA 297
consensus_4961#1      ATGGGGGG-----TGTAGTGGTGTATTGGATGGGAA--GGAACTATGAATGGGTGACACC 182
                      * *  *       ** **   ** *   ******    *     **  ****  *  ** 

consensus_4961#0      TAAGGGTACACTATGCAAACAGCGGATGATCTGGTGCCACTT-CTTCTTGG-AGGAGT-A 354
consensus_4961#1      TGATGCGCCAACACGCGGAT---GGATGCTGGGTGGCCACTTGCTTGTTGGGAGGAGTGA 239
                      * * *   **  * **  *    ***** *  *  ******* *** **** ****** *

consensus_4961#0      AGTGT-CTTGTCTT--GTGT-CGGGGTGCATGG-AGAGCT-CAACTAA--GGCATGT-AT 405
consensus_4961#1      AGTGTGCTTGTGCTTGGTGTGCGGGGTGCATGGGAGAGCTGCAACTGAAGGGCATGTGAT 299
                      ***** *****  *  **** ************ ****** ***** *  ******* **

consensus_4961#0      TTGT-AGATATGT-AGT-CTTTCGTTTT--CATGGCTAGCAAT-ATGCACCTCT--GCAT 457
consensus_4961#1      TTGTGAGATATGTGAGTGCTTTCGTTGTTGCAGGGCTAGCAATGATGCACCTGCTGGCAT 359
                      **** ******** *** ******** *  ** ********** ********    ****

consensus_4961#0      -ATGTGGG---TTTCAATCTTGT----CCCATCT--CCCCAAT-ACACAAGT-CAT-TTG 504
consensus_4961#1      GATGTGGGGTGTTGCAATGCTGTGGTGCCCATGCTGCCCCAATGACACAAGTGCATGTTG 419
                       *******   ** ****  ***    *****    ******* ******** *** ***

consensus_4961#0      ATATATCATCTAAACATTTATTCTGTATTCTGCTGAATTTAGACA-ACTGGAATATATCA 563
consensus_4961#1      ATATATCATCTAAACATTTATTCTGTATTCTGCTGAATTTAGACTTACTGGAATATATCT 479
                      ********************************************  ************* 

consensus_4961#0      AAGCAAGCTTAATTTCCCCCAAAAAAAAAAAAAAAAAAAAAA 605
consensus_4961#1      AAGCAAGCTTAA------------------------------ 491
                      ************