These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_497#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1660 fasta sequence [GAAGCACCCAATACATGCTGTTTAGCTCCACACAAATAGTTAGAAAATGAATCATTGTCTTGTAGTATCCCACAAAAAACTCCAAACTTTCCGCACATTTGCAGCTAGCAAGTTCTCTTCTTTTACCAAATCTGCACAGAAGTCTATAAAATACTCCTTCCAGTTCATCTACCAAAACAATCCACTCTTTGTCCATGTAGCTTACTTTGCCCTGATCTCCTTTGCTGGATATGGATCTCTAAAGGTCCTCAAGCCACGAGACAAGTCAAATACTCTGAAAGACTTGGACGTGCTATTTACTTCCGTATCTGCATCAACTGTTTCAAGCATGGCTACTGTTGAAATGGAGGATTTCTCAAGCGCTCAACTCTGGGTTTTGACTATTTTAATGCTGATTGGTGGTGAGGTATTCACTTCAATGCTTGGCATTCACTTTATGAGAGCCGAATTTGGTACAAAAGAGTCAGTCAGCACAAGGGATCACTCACCTTGCATTGATATTGAGTCTATTACTTCCACAAAATTTGGTCCCAGCACCCAGGGCACAAAAGTTACAGTTTCATTTTCTGAACTCCGCATGGAAAATGGAGGACATGTAGAGCCCAAGACGATTAAATTTTTAGGTTTTGTAGTGATGGGATATCTTCTAATAACAAACTTAGGCGGCTCCCTACTTATTTACCTCTACCTTAACCTGGTACCAAGTGCACATAAAATTCTAAAGAGAAAAGGCATTGGGATCATCGTATTCTCAGTATTTACAGCCATCTCCTCAGTTGGAAATTGTGGCTTCACTCCAGTAAATGAGAATATGATTATCTTTCAGAAGAACTCCATTCTTCTATTGCTAATTCTTCCTCAGATACTAGCAGGAAATACATTATTTGCACCATGCTTGAGATTAATGGTGTGGTCACTTGAGAAGATTACCGGAAAAAAGGATTGTCGTTACATTCTTGAATATCCAAAGGCCATTGGATATAAACATCTTATGAGTACCAGGGAAAGTGTTTATTTGACTTTAACAGTTGTGAGCTTGATCATTCTGCAAACCGTATTGTTCCTCTCTTTGGAGTGGAGCTCGGTAGCTTTGGATGGAATGAGCAACTATCAAAAGATAGTATCCGCTCTATTTCAGTCGGTCAATGCTAGGCATGCAGGTGAATCTGTTACAGATCTGTCAAACCTCTCTTCAGCAATCCTAGTCCTATACACCATCATGATGTATCTCCCTGGTTACACTTCGTTTTTACCCAGACATGATGGTGAGGATTCTAAGACCGAGAAGATAAACAAAAGAAAAGGGCTATTGGAGAACTGGATCTTCTCACATATGTCTTATTTGGCTATCTTTGTAATGCTAATTTGCATCACAGAACGGGACTCGATGGCTACAGATCCACTTAATTTCAATGTTTTCAGCATATTGTTTGAAGTCGTCAGTGCATATGGAAATGTGGGGTTCTCGGTTGGCTACAGCTGCAAGAGGCTACTGAACCATGATGCACGCTGCAAGGATGCCTCGTACGGGTTTGCGGGGAAATGGAGCGACAATGGGAAAGCGATCCTGATCATCGTCATGCTTTTCGGGAGGCTTAAAACGTTTAACATGAAGGGTGGAAGAGCCTGGAAGCTTAGATAACATCTAACCAATTTCAGA] [+] EMBL OSA491818 [GAAGCACCCAATACATGCTGTTTAGCTCCACACAAATAGTTAGAAAATGAATCATTGTCTTGTAGTATCCCACAAAAAACTCCAAACTTTCCGCACATTTGCAGCTAGCAAGTTCTCTTCTTTTACCAAATCTGCACAGAAGTCTATAAAATACTCCTTCCAGTTCATCTACCAAAACAATCCACTCTTTGTCCATGTAGCTTACTTTGCCCTGATCTCCTTTGCTGGATATGGATCTCTAAAGGTCCTCAAGCCACGAGACAAGTCAAATACTCTGAAAGACTTGGACGTGCTATTTACTTCCGTATCTGCATCAACTGTTTCAAGCATGGCTACTGTTGAAATGGAGGATTTCTCAAGCGCTCAACTCTGGGTTTTGACTATTTTAATGCTGATTGGTGGTGAGGTATTCACTTCAATGCTTGGCATTCACTTTATGAGAGCCGAATTTGGTACAAAAGAGTCAGTCAGCACAAGGGATCACTCACCTTGCATTGATATTGAGTCTATTACTTCCACAAAATTTGGTCCCAGCACCCAGGGCACAAAAGTTACAGTTTCATTTTCTGAACTCCGCATGGAAAATGGAGGACATGTAGAGCCCAAGACGATTAAATTTTTAGGTTTTGTAGTGATGGGATATCTTCTAATAACAAACTTAGGCGGCTCCCTACTTATTTACCTCTACCTTAACCTGGTACCAAGTGCACATAAAATTCTAAAGAGAAAAGGCATTGGGATCATCGTATTCTCAGTATTTACAGCCATCTCCTCAGTTGGAAATTGTGGCTTCACTCCAGTAAATGAGAATATGATTATCTTTCAGAAGAACTCCATTCTTCTATTGCTAATTCTTCCTCAGATACTAGCAGGAAATACATTATTTGCACCATGCTTGAGATTAATGGTGTGGTCACTTGAGAAGATTACCGGAAAAAAGGATTGTCGTTACATTCTTGAATATCCAAAGGCCATTGGATATAAACATCTTATGAGTACCAGGGAAAGTGTTTATTTGACTTTAACAGTTGTGAGCTTGATCATTCTGCAAACCGTATTGTTCCTCTCTTTGGAGTGGAGCTCGGTAGCTTTGGATGGAATGAGCAACTATCAAAAGATAGTATCCGCTCTATTTCAGTCGGTCAATGCTAGGCATGCAGGTGAATCTGTTACAGATCTGTCAAACCTCTCTTCAGCAATCCTAGTCCTATACACCATCATGATGTATCTCCCTGGTTACACTTCGTTTTTACCCAGACATGATGGTGAGGATTCTAAGACCGAGAAGATAAACAAAAGAAAAGGGCTATTGGAGAACTGGATCTTCTCACATATGTCTTATTTGGCTATCTTTGTAATGCTAATTTGCATCACAGAACGGGACTCGATGGCTACAGATCCACTTAATTTCAATGTTTTCAGCATATTGTTTGAAGTCGTCAGTGCATATGGAAATGTGGGGTTCTCGGTTGGCTACAGCTGCAAGAGGCTACTGAACCATGATGCACGCTGCAAGGATGCCTCGTACGGGTTTGCGGGGAAATGGAGCGACAATGGGAAAGCGATCCTGATCATCGTCATGCTTTTCGGGAGGCTTAAAACGTTTAACATGAAGGGTGGAAGAGCCTGGAAGCTTAGATAACATCTAACCAATTTCAGA] consensusID : consensus_497#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1362 fasta sequence [ATATTTTTTTCCCTATATAAATGGACAAACATCAGTACATTGATGCAAATAAGGAAGCACCCAATACATGCTGTTTAGCTCCACACAAATAGTTAGAAAATGAATCATTGTCTTGTAGTATCCCACAAAAAACTCCAAACTTTCCGCACATTTGCAGCTAGCAAGTTCTCTTCTTTTACCAAATCTGCACAGAAGTCTATAAAATACTCCTTCCAGTTCATCTACCAAAACAATCCACTCTTTGTCCATGTAGCTTACTTTGCCCTGATCTCCTTTGCTGGATATGGATCTCTAAAGGTCCTCAAGCCACGAGACAAGTCAAATACTCTGAAAGACTTGGACGTGCTATTTACTTCCGTATCTGCATCAACTGTTTCAAGCATGGCTACTGTTGAAATGGAGGATTTCTCAAGCGCTCAACTCTGGGTTTTGACTATTTTAATGCTGATTGGTGGTGAGGTATTCACTTCAATGCTTGGCATTCACTTTATGAGAGCCGAATTTGGTACAAAAGAGTCAGTCAGCACAAGGGATCACTCACCTTGCATTGATATTGAGTCTATTACTTCCACAAAATTTGGTCCCAGCACCCAGGGCACAAAAGTTACAGTTTCATTTTCTGAACTCCGCATGGAAAATGGAGGACATGTAGAGCCCAAGACGATTAAATTTTTAGGTTTTGTAGTGATGGGATATCTTCTAATAACAAACTTAGGCGGCTCCCTACTTATTTACCTCTACCTTAACCTGGTACCAAGTGCACATAAAATTCTAAAGAGAAAAGGCATTGGGATCATCGTATTCTCAGTATTTACAGCCATCTCCTCAGTTGGAAATTGTGGCTTCACTCCAGTAAATGAGAATATGATTATCTTTCAGAAGAACTCCATTCTTCTATTGCTAATTCTTCCTCAGATACTAGCAGGAAATACATTATTTGCACCATGCTTGAGATTAATGGTGTGGTCACTTGAGAAGATTACCGGAAAAAAGGATTGTCGTTACATTCTTGAATATCCAAAGGCCATTGGATATAAACATCTTATGAGTACCAGGGAAAGTGTTTATTTGACTTTAACAGTTGTGAGCTTGATCATTCTGCAAACCGTATTGTTCCTCTCTTTGGAGTGGAGCTCGGTAGCTTTGGATGGAATGAGCAACTATCAAAAGATAGTATCCGCTCTATTTCAGTCGGTCAATGCTAGGCATGCAGGTGAATCTGTTACAGATCTGTCAAACCTCTCTTCAGCAATCCTAGTCATACATCTCGTCGGGCGGCGAAGGGAAGCTCTCGCATGGCGGCGGCGGCGCGAGCCGGCGACCTCGATAGCGAGCGGGCGGTCGCCGACGACGGCGATGATG] [-] EMBL AK121973 [ATATTTTTTTCCCTATATAAATGGACAAACATCAGTACATTGATGCAAATAAGGAAGCACCCAATACATGCTGTTTAGCTCCACACAAATAGTTAGAAAATGAATCATTGTCTTGTAGTATCCCACAAAAAACTCCAAACTTTCCGCACATTTGCAGCTAGCAAGTTCTCTTCTTTTACCAAATCTGCACAGAAGTCTATAAAATACTCCTTCCAGTTCATCTACCAAAACAATCCACTCTTTGTCCATGTAGCTTACTTTGCCCTGATCTCCTTTGCTGGATATGGATCTCTAAAGGTCCTCAAGCCACGAGACAAGTCAAATACTCTGAAAGACTTGGACGTGCTATTTACTTCCGTATCTGCATCAACTGTTTCAAGCATGGCTACTGTTGAAATGGAGGATTTCTCAAGCGCTCAACTCTGGGTTTTGACTATTTTAATGCTGATTGGTGGTGAGGTATTCACTTCAATGCTTGGCATTCACTTTATGAGAGCCGAATTTGGTACAAAAGAGTCAGTCAGCACAAGGGATCACTCACCTTGCATTGATATTGAGTCTATTACTTCCACAAAATTTGGTCCCAGCACCCAGGGCACAAAAGTTACAGTTTCATTTTCTGAACTCCGCATGGAAAATGGAGGACATGTAGAGCCCAAGACGATTAAATTTTTAGGTTTTGTAGTGATGGGATATCTTCTAATAACAAACTTAGGCGGCTCCCTACTTATTTACCTCTACCTTAACCTGGTACCAAGTGCACATAAAATTCTAAAGAGAAAAGGCATTGGGATCATCGTATTCTCAGTATTTACAGCCATCTCCTCAGTTGGAAATTGTGGCTTCACTCCAGTAAATGAGAATATGATTATCTTTCAGAAGAACTCCATTCTTCTATTGCTAATTCTTCCTCAGATACTAGCAGGAAATACATTATTTGCACCATGCTTGAGATTAATGGTGTGGTCACTTGAGAAGATTACCGGAAAAAAGGATTGTCGTTACATTCTTGAATATCCAAAGGCCATTGGATATAAACATCTTATGAGTACCAGGGAAAGTGTTTATTTGACTTTAACAGTTGTGAGCTTGATCATTCTGCAAACCGTATTGTTCCTCTCTTTGGAGTGGAGCTCGGTAGCTTTGGATGGAATGAGCAACTATCAAAAGATAGTATCCGCTCTATTTCAGTCGGTCAATGCTAGGCATGCAGGTGAATCTGTTACAGATCTGTCAAACCTCTCTTCAGCAATCCTAGTCATACATCTCGTCGGGCGGCGAAGGGAAGCTCTCGCATGGCGGCGGCGGCGCGAGCCGGCGACCTCGATAGCGAGCGGGCGGTCGCCGACGACGGCGATGATG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_497#0 -----------------------------------------------------GAAGCAC 7 consensus_497#1 ATATTTTTTTCCCTATATAAATGGACAAACATCAGTACATTGATGCAAATAAGGAAGCAC 60 ******* consensus_497#0 CCAATACATGCTGTTTAGCTCCACACAAATAGTTAGAAAATGAATCATTGTCTTGTAGTA 67 consensus_497#1 CCAATACATGCTGTTTAGCTCCACACAAATAGTTAGAAAATGAATCATTGTCTTGTAGTA 120 ************************************************************ consensus_497#0 TCCCACAAAAAACTCCAAACTTTCCGCACATTTGCAGCTAGCAAGTTCTCTTCTTTTACC 127 consensus_497#1 TCCCACAAAAAACTCCAAACTTTCCGCACATTTGCAGCTAGCAAGTTCTCTTCTTTTACC 180 ************************************************************ consensus_497#0 AAATCTGCACAGAAGTCTATAAAATACTCCTTCCAGTTCATCTACCAAAACAATCCACTC 187 consensus_497#1 AAATCTGCACAGAAGTCTATAAAATACTCCTTCCAGTTCATCTACCAAAACAATCCACTC 240 ************************************************************ consensus_497#0 TTTGTCCATGTAGCTTACTTTGCCCTGATCTCCTTTGCTGGATATGGATCTCTAAAGGTC 247 consensus_497#1 TTTGTCCATGTAGCTTACTTTGCCCTGATCTCCTTTGCTGGATATGGATCTCTAAAGGTC 300 ************************************************************ consensus_497#0 CTCAAGCCACGAGACAAGTCAAATACTCTGAAAGACTTGGACGTGCTATTTACTTCCGTA 307 consensus_497#1 CTCAAGCCACGAGACAAGTCAAATACTCTGAAAGACTTGGACGTGCTATTTACTTCCGTA 360 ************************************************************ consensus_497#0 TCTGCATCAACTGTTTCAAGCATGGCTACTGTTGAAATGGAGGATTTCTCAAGCGCTCAA 367 consensus_497#1 TCTGCATCAACTGTTTCAAGCATGGCTACTGTTGAAATGGAGGATTTCTCAAGCGCTCAA 420 ************************************************************ consensus_497#0 CTCTGGGTTTTGACTATTTTAATGCTGATTGGTGGTGAGGTATTCACTTCAATGCTTGGC 427 consensus_497#1 CTCTGGGTTTTGACTATTTTAATGCTGATTGGTGGTGAGGTATTCACTTCAATGCTTGGC 480 ************************************************************ consensus_497#0 ATTCACTTTATGAGAGCCGAATTTGGTACAAAAGAGTCAGTCAGCACAAGGGATCACTCA 487 consensus_497#1 ATTCACTTTATGAGAGCCGAATTTGGTACAAAAGAGTCAGTCAGCACAAGGGATCACTCA 540 ************************************************************ consensus_497#0 CCTTGCATTGATATTGAGTCTATTACTTCCACAAAATTTGGTCCCAGCACCCAGGGCACA 547 consensus_497#1 CCTTGCATTGATATTGAGTCTATTACTTCCACAAAATTTGGTCCCAGCACCCAGGGCACA 600 ************************************************************ consensus_497#0 AAAGTTACAGTTTCATTTTCTGAACTCCGCATGGAAAATGGAGGACATGTAGAGCCCAAG 607 consensus_497#1 AAAGTTACAGTTTCATTTTCTGAACTCCGCATGGAAAATGGAGGACATGTAGAGCCCAAG 660 ************************************************************ consensus_497#0 ACGATTAAATTTTTAGGTTTTGTAGTGATGGGATATCTTCTAATAACAAACTTAGGCGGC 667 consensus_497#1 ACGATTAAATTTTTAGGTTTTGTAGTGATGGGATATCTTCTAATAACAAACTTAGGCGGC 720 ************************************************************ consensus_497#0 TCCCTACTTATTTACCTCTACCTTAACCTGGTACCAAGTGCACATAAAATTCTAAAGAGA 727 consensus_497#1 TCCCTACTTATTTACCTCTACCTTAACCTGGTACCAAGTGCACATAAAATTCTAAAGAGA 780 ************************************************************ consensus_497#0 AAAGGCATTGGGATCATCGTATTCTCAGTATTTACAGCCATCTCCTCAGTTGGAAATTGT 787 consensus_497#1 AAAGGCATTGGGATCATCGTATTCTCAGTATTTACAGCCATCTCCTCAGTTGGAAATTGT 840 ************************************************************ consensus_497#0 GGCTTCACTCCAGTAAATGAGAATATGATTATCTTTCAGAAGAACTCCATTCTTCTATTG 847 consensus_497#1 GGCTTCACTCCAGTAAATGAGAATATGATTATCTTTCAGAAGAACTCCATTCTTCTATTG 900 ************************************************************ consensus_497#0 CTAATTCTTCCTCAGATACTAGCAGGAAATACATTATTTGCACCATGCTTGAGATTAATG 907 consensus_497#1 CTAATTCTTCCTCAGATACTAGCAGGAAATACATTATTTGCACCATGCTTGAGATTAATG 960 ************************************************************ consensus_497#0 GTGTGGTCACTTGAGAAGATTACCGGAAAAAAGGATTGTCGTTACATTCTTGAATATCCA 967 consensus_497#1 GTGTGGTCACTTGAGAAGATTACCGGAAAAAAGGATTGTCGTTACATTCTTGAATATCCA 1020 ************************************************************ consensus_497#0 AAGGCCATTGGATATAAACATCTTATGAGTACCAGGGAAAGTGTTTATTTGACTTTAACA 1027 consensus_497#1 AAGGCCATTGGATATAAACATCTTATGAGTACCAGGGAAAGTGTTTATTTGACTTTAACA 1080 ************************************************************ consensus_497#0 GTTGTGAGCTTGATCATTCTGCAAACCGTATTGTTCCTCTCTTTGGAGTGGAGCTCGGTA 1087 consensus_497#1 GTTGTGAGCTTGATCATTCTGCAAACCGTATTGTTCCTCTCTTTGGAGTGGAGCTCGGTA 1140 ************************************************************ consensus_497#0 GCTTTGGATGGAATGAGCAACTATCAAAAGATAGTATCCGCTCTATTTCAGTCGGTCAAT 1147 consensus_497#1 GCTTTGGATGGAATGAGCAACTATCAAAAGATAGTATCCGCTCTATTTCAGTCGGTCAAT 1200 ************************************************************ consensus_497#0 GCTAGGCATGCAGGTGAATCTGTTACAGATCTGTCAAACCTCTCTTCAGCAATCCTAGTC 1207 consensus_497#1 GCTAGGCATGCAGGTGAATCTGTTACAGATCTGTCAAACCTCTCTTCAGCAATCCTAGTC 1260 ************************************************************ consensus_497#0 CTATACACCATCATGATGTATCTCCCTGGTTACACTTCGTTTTTACCCAGACATGATGGT 1267 consensus_497#1 ATACATCTCGTCGGGCGGCGAAGGGAAGCTCTCGCATGGCGGCGGC---GGCGCGA-GCC 1316 ** * * ** * * * * * * * * * * * ** * consensus_497#0 GAGGATTCTAAGACCGAGAAGATAAACAAAAGAAAAGGGCTATTGGAGAACTGGATCTTC 1327 consensus_497#1 GGCGACCTCGATAGCGAGCGGGCGGTCGCC-GACGACGGCGATGATG------------- 1362 * ** * * **** * * ** * *** ** consensus_497#0 TCACATATGTCTTATTTGGCTATCTTTGTAATGCTAATTTGCATCACAGAACGGGACTCG 1387 consensus_497#1 ------------------------------------------------------------ consensus_497#0 ATGGCTACAGATCCACTTAATTTCAATGTTTTCAGCATATTGTTTGAAGTCGTCAGTGCA 1447 consensus_497#1 ------------------------------------------------------------ consensus_497#0 TATGGAAATGTGGGGTTCTCGGTTGGCTACAGCTGCAAGAGGCTACTGAACCATGATGCA 1507 consensus_497#1 ------------------------------------------------------------ consensus_497#0 CGCTGCAAGGATGCCTCGTACGGGTTTGCGGGGAAATGGAGCGACAATGGGAAAGCGATC 1567 consensus_497#1 ------------------------------------------------------------ consensus_497#0 CTGATCATCGTCATGCTTTTCGGGAGGCTTAAAACGTTTAACATGAAGGGTGGAAGAGCC 1627 consensus_497#1 ------------------------------------------------------------ consensus_497#0 TGGAAGCTTAGATAACATCTAACCAATTTCAGA 1660 consensus_497#1 --------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||