|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4971#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1292 fasta sequence
[TCAATTATAACTAAACCCAACAAGCTGTGCCTAGCTCCAACAGCTCAGCTCAGCTAAGCTAGTTGCTAGCAGTGGCCGGTGCGTGATCGGCCATGGCGGCGGCGGCAGCAACGGCGTTGGCCGCCGTGATACTGCTGCTGGTGCTGGCGACGACGGCGGAGGCGGCGTGCTCGGTGAGCGCGATCTACAGCTTCGGCGACTCCATCGCCGACACCGGCAACCTCCTCCGGGAGGGCCCCGCCGTCGGCGCCTTCGCCTCCATCGGCACCTACCCCTACGGCCAGACCCTCCGCCGCCCCACCGGCCGCTGCTCCGACGGCCTCCTCATCATCGACTACTTCGCCATGGCGCTGAACCTGTCGCTGGTGAGCCCGTACCTGGAGAAGGGGGCGAGGTTCGAGAGCGGGGTGAACTTCGCGGTGGCCGGGGCGACGGCGCTGGACCGGAGCTACCTGCTGCAGAGCGGCGTGGTGATGCCGCCGGCGAGCGTGCCGCTCAGCTCGCAGCTCGACTGGTTCAGGTCACACCTCAACTCAACCTGTTCTTCACACCAAGACTGCGCGGAAAAGCTGTCCGGAGCTCTGTTCTTGGTTGGGGAGATAGGAGGGAACGACTACAACTACGCCTTCTTCCAGGGGAGATCCATCGAATCCATGAAGACCTACGTGCCACAAGTTGTGAGAAGCATAATGGACGTTGCAAAGGAGGTGATCGAGCTAGGAGCGACCAAGATCGTCATCCCGGGCAACTTCCCGATCGGGTGCTCGCCGAGTTACCTCTCCCTCTTCTCCACGGCGATCTCCGGCGACTACGACGACCGGGGCTGCCTCAAGAGTTACAACTCCTTCGCCATGTACCACAATGATCAGCTCCGGGCCGCCATAGATGACCTCCGGAAGGTCAACTCGGATGTCGCCATCGTCTACGCAGACTACTATGGCGCCTTCATGCATCTCCTCCAAAAGGCTGACCTCTTAGGGTTCGAGGAGGACTCATTGCTCAAGGCATGTTGCGGCGCAGGCGGAAAGTACAACTTTGACATGAACCTAATGTGTGGCGCAGTGGGAACGAACGTTCGTGCAGACCCAGCGCAGCACATTAGCTGGGATGGCATCCACCTCACTCAACAGGCGTACAAGGCTATGGCTTTGTCCCTTATTATGGAAGGGTTTGCTCAACCAGCTGACATTGTGCAAAAAATCTGGAGTTGCTAGGAGCTTGAGCATGTATATTGTTGAATGTTATAAGCATTGAGTTCGTATGAGCCAACAGTTATACAACGGTAACTATAC]
[+] EMBL AK108542 [TCAATTATAACTAAACCCAACAAGCTGTGCCTAGCTCCAACAGCTCAGCTCAGCTAAGCTAGTTGCTAGCAGTGGCCGGTGCGTGATCGGCCATGGCGGCGGCGGCAGCAACGGCGTTGGCCGCCGTGATACTGCTGCTGGTGCTGGCGACGACGGCGGAGGCGGCGTGCTCGGTGAGCGCGATCTACAGCTTCGGCGACTCCATCGCCGACACCGGCAACCTCCTCCGGGAGGGCCCCGCCGTCGGCGCCTTCGCCTCCATCGGCACCTACCCCTACGGCCAGACCCTCCGCCGCCCCACCGGCCGCTGCTCCGACGGCCTCCTCATCATCGACTACTTCGCCATGGCGCTGAACCTGTCGCTGGTGAGCCCGTACCTGGAGAAGGGGGCGAGGTTCGAGAGCGGGGTGAACTTCGCGGTGGCCGGGGCGACGGCGCTGGACCGGAGCTACCTGCTGCAGAGCGGCGTGGTGATGCCGCCGGCGAGCGTGCCGCTCAGCTCGCAGCTCGACTGGTTCAGGTCACACCTCAACTCAACCTGTTCTTCACACCAAGACTGCGCGGAAAAGCTGTCCGGAGCTCTGTTCTTGGTTGGGGAGATAGGAGGGAACGACTACAACTACGCCTTCTTCCAGGGGAGATCCATCGAATCCATGAAGACCTACGTGCCACAAGTTGTGAGAAGCATAATGGACGTTGCAAAGGAGGTGATCGAGCTAGGAGCGACCAAGATCGTCATCCCGGGCAACTTCCCGATCGGGTGCTCGCCGAGTTACCTCTCCCTCTTCTCCACGGCGATCTCCGGCGACTACGACGACCGGGGCTGCCTCAAGAGTTACAACTCCTTCGCCATGTACCACAATGATCAGCTCCGGGCCGCCATAGATGACCTCCGGAAGGTCAACTCGGATGTCGCCATCGTCTACGCAGACTACTATGGCGCCTTCATGCATCTCCTCCAAAAGGCTGACCTCTTAGGGTTCGAGGAGGACTCATTGCTCAAGGCATGTTGCGGCGCAGGCGGAAAGTACAACTTTGACATGAACCTAATGTGTGGCGCAGTGGGAACGAACGTTCGTGCAGACCCAGCGCAGCACATTAGCTGGGATGGCATCCACCTCACTCAACAGGCGTACAAGGCTATGGCTTTGTCCCTTATTATGGAAGGGTTTGCTCAACCAGCTGACATTGTGCAAAAAATCTGGAGTTGCTAGGAGCTTGAGCATGTATATTGTTGAATGTTATAAGCATTGAGTTCGTATGAGCCAACAGTTATACAACGGTAACTATAC]
consensusID : consensus_4971#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 176 fasta sequence
[TTTTGTGAATTTGGCAGTTTTTTTTCAAATTTGATTAAAATTCGTTTAAAATTTTGGTATATCGTCCAAACTGAATGATTAAACCCTGTCGTAACTCGTACCTTGGTGTGAAGAACAGGTTGAGTTGAGGTGTGACCTGAACCAGTCGAGCTGCGAGCTGAGCGGCACGCTCGCCG]
[+] EMBL CF332610 [TTTTGTGAATTTGGCAGTTTTTTTTCAAATTTGATTAAAATTCGTTTAAAATTTTGGTATATCGTCCAAACTGAATGATTAAACCCTGTCGTAACTCGTACCTTGGTGTGAAGAACAGGTTGAGTTGAGGTGTGACCTGAACCAGTCGAGCTGCGAGCTGAGCGGCACGCTCGCC ]
[-] EMBL CF332611 [ TTTGTGAATTTGGCAGTTTTTTTTCAAATTTGATTAAAATTCGTTTAAAATTTTGGTATATCGTCCAAACTGAATGATTAAACCCTGTCGTAACTCGTACCTTGGTGTGAAGAACAGGTTGAGTTGAGGTGTGACCTGAACCAGTCGAGCTGCGAGCTGAGCGGCACGCTCGCCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4971#0 TCAATTATAACTAAACCCAACAAGCTGTGCCTAGCTCCAACAGCTCAGCTCAGCTAAGCT 60
consensus_4971#1 ------------------------------------------------------------
consensus_4971#0 AGTTGCTAGCAGTGGCCGGTGCGTGATCGGCCATGGCGGCGGCGGCAGCAACGGCGTTGG 120
consensus_4971#1 ------------------------------------------------------------
consensus_4971#0 CCGCCGTGATACTGCTGCTGGTGCTGGCGACGACGGCGGAGGCGGCGTGCTCGGTGAGCG 180
consensus_4971#1 ------------------------------------------------------------
consensus_4971#0 CGATCTACAGCTTCGGCGACTCCATCGCCGACACCGGCAACCTCCTCCGGGAGGGCCCCG 240
consensus_4971#1 ------------------------------------------------------------
consensus_4971#0 CCGTCGGCGCCTTCGCCTCCATCGGCACCTACCCCTACGGCCAGACCCTCCGCCGCCCCA 300
consensus_4971#1 ------------------------------------------------------------
consensus_4971#0 CCGGCCGCTGCTCCGACGGCCTCCTCATCATCGACTACTTCGCCATGGCGCTGAACCTGT 360
consensus_4971#1 ------------------------------------------------------------
consensus_4971#0 CGCTGGTGAGCCCGTACCTGGAGAAGGGGGCGAGGTTCGAGAGCGGGGTGAACTTCGCGG 420
consensus_4971#1 ------------------------------------------------------------
consensus_4971#0 TGGCCGGGGCGACGGCGCTGGACCGGAGCTACCTGCTGCAGAGCGGCGTGGTGATGCCGC 480
consensus_4971#1 ------------------------------------------------------------
consensus_4971#0 CGGCGAGCGTGCCGCTCAGCTCGCAGCTCGACTGGTTCAGGTCACACCTCAACTCAACCT 540
consensus_4971#1 ------------------------------------------------------------
consensus_4971#0 GTTCTTCACACCAAGACTGCGCGGAAAAGCTGTCCGGAGCTCTGTTCTTGGTTGGGGAGA 600
consensus_4971#1 ------------------------------------------------------------
consensus_4971#0 TAGGAGGGAACGACTACAACTACGCCTTCTTCCAGGGGAGATCCATCGAATCCATGAAGA 660
consensus_4971#1 ------------------------------------------------------------
consensus_4971#0 CCTACGTGCCACAAGTTGTGAGAAGCATAATGGACGTTGCAAAGGAGGTGATCGAGCTAG 720
consensus_4971#1 ------------------------------------------------------------
consensus_4971#0 GAGCGACCAAGATCGTCATCCCGGGCAACTTCCCGATCGGGTGCTCGCCGAGTTACCTCT 780
consensus_4971#1 ------------------------------------------------------------
consensus_4971#0 CCCTCTTCTCCACGGCGATCTCCGGCGACTACGACGACCGGGGCTGCCTCAAGAGTTACA 840
consensus_4971#1 ------------------------------------------------------------
consensus_4971#0 ACTCCTTCGCCATGTACCACAATGATCAGCTCCGGGCCGCCATAGATGACCTCCGGAAGG 900
consensus_4971#1 --------------------------------------------------TTTTGTGAAT 10
* * *
consensus_4971#0 TCAACTCGGATGTCGCCATCGTCTACGCAGACTACTATGGCGCCTTCATGCATCTCCTCC 960
consensus_4971#1 TTGGCA-GTTTTTTTTCAAATTTGATTAAAATTCGTTTAAAATTTT--GGTATATCGTCC 67
* * * * * ** * * * * * * * ** * ** ** ***
consensus_4971#0 AAAAGGCTGACCTCTTAGGGTTCGAGGAGGACTCATTGCTCAAGGCATGTTGCGGCGCAG 1020
consensus_4971#1 AAA---CTGAATGATTAAACCCTG--------TCGTAACTCGTACCTTGGTGTGAAGAAC 116
*** **** *** * ** * *** * ** ** * * *
consensus_4971#0 GCGGAAAGTACAACTTTGACATGAACCTAATGTGTGGCGCAGTGGGAACGAACGTTCGTG 1080
consensus_4971#1 AGGTTGAGTTGAGGTGTGACCTGAACCAGTCGAGCTGCG-AGCTGAGCGGCACGCTCGCC 175
* *** * * **** ****** * * *** ** * * *** ***
consensus_4971#0 CAGACCCAGCGCAGCACATTAGCTGGGATGGCATCCACCTCACTCAACAGGCGTACAAGG 1140
consensus_4971#1 G----------------------------------------------------------- 176
consensus_4971#0 CTATGGCTTTGTCCCTTATTATGGAAGGGTTTGCTCAACCAGCTGACATTGTGCAAAAAA 1200
consensus_4971#1 ------------------------------------------------------------
consensus_4971#0 TCTGGAGTTGCTAGGAGCTTGAGCATGTATATTGTTGAATGTTATAAGCATTGAGTTCGT 1260
consensus_4971#1 ------------------------------------------------------------
consensus_4971#0 ATGAGCCAACAGTTATACAACGGTAACTATAC 1292
consensus_4971#1 --------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||