These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4984#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 716 fasta sequence [TCACACTGTACTGTCTGATCGCTCGCCGCCGCGGCCGCTCTCCCGCCGGCGCCGCCCCCCTCCGCCGCCGCCATGGGGAAGTTCCGCAAGCTGGGCCGCCACGCCGCCCACCGCGTCTCCATGCTCAGGACTATGGTGTCGCAGCTGGTGAAGCATGAGCGGATCGAGACCACCGTCGCGAAGGCGAAGGAGGTGCGGACGAAAGCGGATCAGATGGTGCAGCTCGGCAAAGAGGGTACGCTTGATGCAGCAAGACGTGCCTCAGCCTTTGTTCGGGGTGACAATGTTGTTCACAAGTTATTCACAGAACTCGCCTACCGCTACAAAGATCGAGCTGGTGGATATACAAGACTACTGCGGACTAGGATACGGGTTGGCGATGCTGCACCAATGGCATACATTGAGCATTCAAAAAAAAAATCATCCGTTTCTTTCACTAAATCAAGAATTGCAGAAGGTTTGTCGACCGGGAGAATGAACTTCGAGAGGCAAAACCTGCAACACCACAGCCACCTCAGCGGGTCCCTCTTGATCCATGGACCAAGTCACTCGCCAGCAAACAATGGGCAGGTCCTAAAATCAGCCAGAACTCCGGAGCAGAAGGCTTATGACAAACCAGAGCGTTCTCTAGCTTTATTTTATGTTGTTGAGAGGTTCTTTTGATCTTTAGAACATGAATAACATTATGCAAGATACTTGTTCTATATGATAATTCT] [+] EMBL AK103320 [TCACACTGTACTGTCTGATCGCTCGCCGCCGCGGCCGCTCTCCCGCCGGCGCCGCCCCCCTCCGCCGCCGCCATGGGGAAGTTCCGCAAGCTGGGCCGCCACGCCGCCCACCGCGTCTCCATGCTCAGGACTATGGTGTCGCAGCTGGTGAAGCATGAGCGGATCGAGACCACCGTCGCGAAGGCGAAGGAGGTGCGGACGAAAGCGGATCAGATGGTGCAGCTCGGCAAAGAGGGTACGCTTGATGCAGCAAGACGTGCCTCAGCCTTTGTTCGGGGTGACAATGTTGTTCACAAGTTATTCACAGAACTCGCCTACCGCTACAAAGATCGAGCTGGTGGATATACAAGACTACTGCGGACTAGGATACGGGTTGGCGATGCTGCACCAATGGCATACATTGAGCATTCAAAAAAAAAATCATCCGTTTCTTTCACTAAATCAAGAATTGCAGAAGGTTTGTCGACCGGGAGAATGAACTTCGAGAGGCAAAACCTGCAACACCACAGCCACCTCAGCGGGTCCCTCTTGATCCATGGACCAAGTCACTCGCCAGCAAACAATGGGCAGGTCCTAAAATCAGCCAGAACTCCGGAGCAGAAGGCTTATGACAAACCAGAGCGTTCTCTAGCTTTATTTTATGTTGTTGAGAGGTTCTTTTGATCTTTAGAACATGAATAACATTATGCAAGATACTTGTTCTATATGATAATTCT] [+] EMBL OSC26331 [ AAAGATCGAGCTGGTGGATATACAAGACTACTGCGGACTAGGATACGGGTTGGCGATGCTGCACCAATGGCATACATTGAGCATTCAAAAAAAAAATCATCCGTTTCTTTCACTAAATCAAGAATTGCAGAAGGTTTGTCGACCGGGAGAATGAACTTCGAGAGGCAAAACCTGCAACACCACAGCCACCTCAGCGGGTCCCTCTTGATCCATGGACCAAGTCACTCGCCAGCAAACAATGGGCAGGTCCTAAAATCAGCCAGAACTCCGGAGCAGAAGGCTTATGACAAACCAGAGCGTTCTCTAGCTTTATTTTATGTTGTTGAGAGGTTCTTTTGATCTTTAGAACATGAATAACATTATGCAAGATACTTGTTCTATATGATAAT ] consensusID : consensus_4984#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 545 fasta sequence [GTGTCGCAGCTGGTGAAGCATGAGCGGATCGAGACCACCGTCGCGAAGGCGAAGGAGGTGCGGACGAAAGCGGATCAGATGGTGCAGCTCGGCAAAGAGGGTACGCTTGATGCAGCAAGACGTGCCCCAGCCTTTGTTCGGGGTGACAATGTTGTTCACAAGTTATTCACAGAGCTCGCCTACCGCTACAAAGATCGAGCTGGTGGATATACAAGACTACTGCGGACTAGGATACGGGTTGGCGATGCTGCACCAATGGCATACATTGAGTTTGTCGACGGGGAGAATGAACTTCGAGAGGCAACACCTGCAACACCACAGCCACCTCAGCGGGTCCCTCTTGATCCATGGACCAAGTCACTCGCCAGCAAACAATGGGCAGGTCCTAAAATCAGCCAGAACTCCGGAGCAGAAGGCTTATGACAAACCAGAGCGTTCTCTAGCTTTATTTTATGTTGTTGAGAGGTTCTTTTGATCTTTAGAACATGAATAACATTATGCAAGATACTTGTTCTATATGATAATTCTGTTAGCGATCAATGTCT] [+] EMBL CA766051 [GTGTCGCAGCTGGTGAAGCATGAGCGGATCGAGACCACCGTCGCGAAGGCGAAGGAGGTGCGGACGAAAGCGGATCAGATGGTGCAGCTCGGCAAAGAGGGTACGCTTGATGCAGCAAGACGTGCCCCAGCCTTTGTTCGGGGTGACAATGTTGTTCACAAGTTATTCACAGAGCTCGCCTACCGCTACAAAGATCGAGCTGGTGGATATACAAGACTACTGCGGACTAGGATACGGGTTGGCGATGCTGCACCAATGGCATACATTGAGTTTGTCGACGGGGAGAATGAACTTCGAGAGGCAACACCTGCAACACCACAGCCACCTCAGCGGGTCCCTCTTGATCCATGGACCAAGTCACTCGCCAGCAAACAATGGGCAGGTCCTAAAATCAGCCAGAACTCCGGAGCAGAAGGCTTATGACAAACCAGAGCGTTCTCTAGCTTTATTTTATGTTGTTGAGAGGTTCTTTTGATCTTTAGAACATGAATAACATTATGCAAGATACTTGTTCTATATGATAATTCTGTTAGCGATCAATGTCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4984#0 TCACACTGTACTGTCTGATCGCTCGCCGCCGCGGCCGCTCTCCCGCCGGCGCCGCCCCCC 60 consensus_4984#1 ------------------------------------------------------------ consensus_4984#0 TCCGCCGCCGCCATGGGGAAGTTCCGCAAGCTGGGCCGCCACGCCGCCCACCGCGTCTCC 120 consensus_4984#1 ------------------------------------------------------------ consensus_4984#0 ATGCTCAGGACTATGGTGTCGCAGCTGGTGAAGCATGAGCGGATCGAGACCACCGTCGCG 180 consensus_4984#1 ---------------GTGTCGCAGCTGGTGAAGCATGAGCGGATCGAGACCACCGTCGCG 45 ********************************************* consensus_4984#0 AAGGCGAAGGAGGTGCGGACGAAAGCGGATCAGATGGTGCAGCTCGGCAAAGAGGGTACG 240 consensus_4984#1 AAGGCGAAGGAGGTGCGGACGAAAGCGGATCAGATGGTGCAGCTCGGCAAAGAGGGTACG 105 ************************************************************ consensus_4984#0 CTTGATGCAGCAAGACGTGCCTCAGCCTTTGTTCGGGGTGACAATGTTGTTCACAAGTTA 300 consensus_4984#1 CTTGATGCAGCAAGACGTGCCCCAGCCTTTGTTCGGGGTGACAATGTTGTTCACAAGTTA 165 ********************* ************************************** consensus_4984#0 TTCACAGAACTCGCCTACCGCTACAAAGATCGAGCTGGTGGATATACAAGACTACTGCGG 360 consensus_4984#1 TTCACAGAGCTCGCCTACCGCTACAAAGATCGAGCTGGTGGATATACAAGACTACTGCGG 225 ******** *************************************************** consensus_4984#0 ACTAGGATACGGGTTGGCGATGCTGCACCAATGGCATACATTGAGCATTCAAAAAAAAAA 420 consensus_4984#1 ACTAGGATACGGGTTGGCGATGCTGCACCAATGGCATACATTGAG--------------- 270 ********************************************* consensus_4984#0 TCATCCGTTTCTTTCACTAAATCAAGAATTGCAGAAGGTTTGTCGACCGGGAGAATGAAC 480 consensus_4984#1 --------------------------------------TTTGTCGACGGGGAGAATGAAC 292 ********* ************ consensus_4984#0 TTCGAGAGGCAAAACCTGCAACACCACAGCCACCTCAGCGGGTCCCTCTTGATCCATGGA 540 consensus_4984#1 TTCGAGAGGCAACACCTGCAACACCACAGCCACCTCAGCGGGTCCCTCTTGATCCATGGA 352 ************ *********************************************** consensus_4984#0 CCAAGTCACTCGCCAGCAAACAATGGGCAGGTCCTAAAATCAGCCAGAACTCCGGAGCAG 600 consensus_4984#1 CCAAGTCACTCGCCAGCAAACAATGGGCAGGTCCTAAAATCAGCCAGAACTCCGGAGCAG 412 ************************************************************ consensus_4984#0 AAGGCTTATGACAAACCAGAGCGTTCTCTAGCTTTATTTTATGTTGTTGAGAGGTTCTTT 660 consensus_4984#1 AAGGCTTATGACAAACCAGAGCGTTCTCTAGCTTTATTTTATGTTGTTGAGAGGTTCTTT 472 ************************************************************ consensus_4984#0 TGATCTTTAGAACATGAATAACATTATGCAAGATACTTGTTCTATATGATAATTCT---- 716 consensus_4984#1 TGATCTTTAGAACATGAATAACATTATGCAAGATACTTGTTCTATATGATAATTCTGTTA 532 ******************************************************** consensus_4984#0 ------------- consensus_4984#1 GCGATCAATGTCT 545 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||