cluster # 4984

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Oryza sativa
cluster # 4984 cluster # 4984 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4984#0 length = 716 sequences # 2

consensus_4984#1 length = 545 sequences # 1

consensusID : consensus_4984#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 716
fasta sequence

                              [TCACACTGTACTGTCTGATCGCTCGCCGCCGCGGCCGCTCTCCCGCCGGCGCCGCCCCCCTCCGCCGCCGCCATGGGGAAGTTCCGCAAGCTGGGCCGCCACGCCGCCCACCGCGTCTCCATGCTCAGGACTATGGTGTCGCAGCTGGTGAAGCATGAGCGGATCGAGACCACCGTCGCGAAGGCGAAGGAGGTGCGGACGAAAGCGGATCAGATGGTGCAGCTCGGCAAAGAGGGTACGCTTGATGCAGCAAGACGTGCCTCAGCCTTTGTTCGGGGTGACAATGTTGTTCACAAGTTATTCACAGAACTCGCCTACCGCTACAAAGATCGAGCTGGTGGATATACAAGACTACTGCGGACTAGGATACGGGTTGGCGATGCTGCACCAATGGCATACATTGAGCATTCAAAAAAAAAATCATCCGTTTCTTTCACTAAATCAAGAATTGCAGAAGGTTTGTCGACCGGGAGAATGAACTTCGAGAGGCAAAACCTGCAACACCACAGCCACCTCAGCGGGTCCCTCTTGATCCATGGACCAAGTCACTCGCCAGCAAACAATGGGCAGGTCCTAAAATCAGCCAGAACTCCGGAGCAGAAGGCTTATGACAAACCAGAGCGTTCTCTAGCTTTATTTTATGTTGTTGAGAGGTTCTTTTGATCTTTAGAACATGAATAACATTATGCAAGATACTTGTTCTATATGATAATTCT]

[+] EMBL AK103320             [TCACACTGTACTGTCTGATCGCTCGCCGCCGCGGCCGCTCTCCCGCCGGCGCCGCCCCCCTCCGCCGCCGCCATGGGGAAGTTCCGCAAGCTGGGCCGCCACGCCGCCCACCGCGTCTCCATGCTCAGGACTATGGTGTCGCAGCTGGTGAAGCATGAGCGGATCGAGACCACCGTCGCGAAGGCGAAGGAGGTGCGGACGAAAGCGGATCAGATGGTGCAGCTCGGCAAAGAGGGTACGCTTGATGCAGCAAGACGTGCCTCAGCCTTTGTTCGGGGTGACAATGTTGTTCACAAGTTATTCACAGAACTCGCCTACCGCTACAAAGATCGAGCTGGTGGATATACAAGACTACTGCGGACTAGGATACGGGTTGGCGATGCTGCACCAATGGCATACATTGAGCATTCAAAAAAAAAATCATCCGTTTCTTTCACTAAATCAAGAATTGCAGAAGGTTTGTCGACCGGGAGAATGAACTTCGAGAGGCAAAACCTGCAACACCACAGCCACCTCAGCGGGTCCCTCTTGATCCATGGACCAAGTCACTCGCCAGCAAACAATGGGCAGGTCCTAAAATCAGCCAGAACTCCGGAGCAGAAGGCTTATGACAAACCAGAGCGTTCTCTAGCTTTATTTTATGTTGTTGAGAGGTTCTTTTGATCTTTAGAACATGAATAACATTATGCAAGATACTTGTTCTATATGATAATTCT]
[+] EMBL OSC26331             [                                                                                                                                                                                                                                                                                                                                    AAAGATCGAGCTGGTGGATATACAAGACTACTGCGGACTAGGATACGGGTTGGCGATGCTGCACCAATGGCATACATTGAGCATTCAAAAAAAAAATCATCCGTTTCTTTCACTAAATCAAGAATTGCAGAAGGTTTGTCGACCGGGAGAATGAACTTCGAGAGGCAAAACCTGCAACACCACAGCCACCTCAGCGGGTCCCTCTTGATCCATGGACCAAGTCACTCGCCAGCAAACAATGGGCAGGTCCTAAAATCAGCCAGAACTCCGGAGCAGAAGGCTTATGACAAACCAGAGCGTTCTCTAGCTTTATTTTATGTTGTTGAGAGGTTCTTTTGATCTTTAGAACATGAATAACATTATGCAAGATACTTGTTCTATATGATAAT   ]




>consensus_4984#0
TCACACTGTACTGTCTGATCGCTCGCCGCCGCGGCCGCTCTCCCGCCGGCGCCGCCCCCC
TCCGCCGCCGCCATGGGGAAGTTCCGCAAGCTGGGCCGCCACGCCGCCCACCGCGTCTCC
ATGCTCAGGACTATGGTGTCGCAGCTGGTGAAGCATGAGCGGATCGAGACCACCGTCGCG
AAGGCGAAGGAGGTGCGGACGAAAGCGGATCAGATGGTGCAGCTCGGCAAAGAGGGTACG
CTTGATGCAGCAAGACGTGCCTCAGCCTTTGTTCGGGGTGACAATGTTGTTCACAAGTTA
TTCACAGAACTCGCCTACCGCTACAAAGATCGAGCTGGTGGATATACAAGACTACTGCGG
ACTAGGATACGGGTTGGCGATGCTGCACCAATGGCATACATTGAGCATTCAAAAAAAAAA
TCATCCGTTTCTTTCACTAAATCAAGAATTGCAGAAGGTTTGTCGACCGGGAGAATGAAC
TTCGAGAGGCAAAACCTGCAACACCACAGCCACCTCAGCGGGTCCCTCTTGATCCATGGA
CCAAGTCACTCGCCAGCAAACAATGGGCAGGTCCTAAAATCAGCCAGAACTCCGGAGCAG
AAGGCTTATGACAAACCAGAGCGTTCTCTAGCTTTATTTTATGTTGTTGAGAGGTTCTTT
TGATCTTTAGAACATGAATAACATTATGCAAGATACTTGTTCTATATGATAATTCT

consensusID : consensus_4984#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 545
fasta sequence

                              [GTGTCGCAGCTGGTGAAGCATGAGCGGATCGAGACCACCGTCGCGAAGGCGAAGGAGGTGCGGACGAAAGCGGATCAGATGGTGCAGCTCGGCAAAGAGGGTACGCTTGATGCAGCAAGACGTGCCCCAGCCTTTGTTCGGGGTGACAATGTTGTTCACAAGTTATTCACAGAGCTCGCCTACCGCTACAAAGATCGAGCTGGTGGATATACAAGACTACTGCGGACTAGGATACGGGTTGGCGATGCTGCACCAATGGCATACATTGAGTTTGTCGACGGGGAGAATGAACTTCGAGAGGCAACACCTGCAACACCACAGCCACCTCAGCGGGTCCCTCTTGATCCATGGACCAAGTCACTCGCCAGCAAACAATGGGCAGGTCCTAAAATCAGCCAGAACTCCGGAGCAGAAGGCTTATGACAAACCAGAGCGTTCTCTAGCTTTATTTTATGTTGTTGAGAGGTTCTTTTGATCTTTAGAACATGAATAACATTATGCAAGATACTTGTTCTATATGATAATTCTGTTAGCGATCAATGTCT]

[+] EMBL CA766051             [GTGTCGCAGCTGGTGAAGCATGAGCGGATCGAGACCACCGTCGCGAAGGCGAAGGAGGTGCGGACGAAAGCGGATCAGATGGTGCAGCTCGGCAAAGAGGGTACGCTTGATGCAGCAAGACGTGCCCCAGCCTTTGTTCGGGGTGACAATGTTGTTCACAAGTTATTCACAGAGCTCGCCTACCGCTACAAAGATCGAGCTGGTGGATATACAAGACTACTGCGGACTAGGATACGGGTTGGCGATGCTGCACCAATGGCATACATTGAGTTTGTCGACGGGGAGAATGAACTTCGAGAGGCAACACCTGCAACACCACAGCCACCTCAGCGGGTCCCTCTTGATCCATGGACCAAGTCACTCGCCAGCAAACAATGGGCAGGTCCTAAAATCAGCCAGAACTCCGGAGCAGAAGGCTTATGACAAACCAGAGCGTTCTCTAGCTTTATTTTATGTTGTTGAGAGGTTCTTTTGATCTTTAGAACATGAATAACATTATGCAAGATACTTGTTCTATATGATAATTCTGTTAGCGATCAATGTCT]




>consensus_4984#1
GTGTCGCAGCTGGTGAAGCATGAGCGGATCGAGACCACCGTCGCGAAGGCGAAGGAGGTG
CGGACGAAAGCGGATCAGATGGTGCAGCTCGGCAAAGAGGGTACGCTTGATGCAGCAAGA
CGTGCCCCAGCCTTTGTTCGGGGTGACAATGTTGTTCACAAGTTATTCACAGAGCTCGCC
TACCGCTACAAAGATCGAGCTGGTGGATATACAAGACTACTGCGGACTAGGATACGGGTT
GGCGATGCTGCACCAATGGCATACATTGAGTTTGTCGACGGGGAGAATGAACTTCGAGAG
GCAACACCTGCAACACCACAGCCACCTCAGCGGGTCCCTCTTGATCCATGGACCAAGTCA
CTCGCCAGCAAACAATGGGCAGGTCCTAAAATCAGCCAGAACTCCGGAGCAGAAGGCTTA
TGACAAACCAGAGCGTTCTCTAGCTTTATTTTATGTTGTTGAGAGGTTCTTTTGATCTTT
AGAACATGAATAACATTATGCAAGATACTTGTTCTATATGATAATTCTGTTAGCGATCAA
TGTCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4984#0      TCACACTGTACTGTCTGATCGCTCGCCGCCGCGGCCGCTCTCCCGCCGGCGCCGCCCCCC 60
consensus_4984#1      ------------------------------------------------------------
                                                                                  

consensus_4984#0      TCCGCCGCCGCCATGGGGAAGTTCCGCAAGCTGGGCCGCCACGCCGCCCACCGCGTCTCC 120
consensus_4984#1      ------------------------------------------------------------
                                                                                  

consensus_4984#0      ATGCTCAGGACTATGGTGTCGCAGCTGGTGAAGCATGAGCGGATCGAGACCACCGTCGCG 180
consensus_4984#1      ---------------GTGTCGCAGCTGGTGAAGCATGAGCGGATCGAGACCACCGTCGCG 45
                                     *********************************************

consensus_4984#0      AAGGCGAAGGAGGTGCGGACGAAAGCGGATCAGATGGTGCAGCTCGGCAAAGAGGGTACG 240
consensus_4984#1      AAGGCGAAGGAGGTGCGGACGAAAGCGGATCAGATGGTGCAGCTCGGCAAAGAGGGTACG 105
                      ************************************************************

consensus_4984#0      CTTGATGCAGCAAGACGTGCCTCAGCCTTTGTTCGGGGTGACAATGTTGTTCACAAGTTA 300
consensus_4984#1      CTTGATGCAGCAAGACGTGCCCCAGCCTTTGTTCGGGGTGACAATGTTGTTCACAAGTTA 165
                      ********************* **************************************

consensus_4984#0      TTCACAGAACTCGCCTACCGCTACAAAGATCGAGCTGGTGGATATACAAGACTACTGCGG 360
consensus_4984#1      TTCACAGAGCTCGCCTACCGCTACAAAGATCGAGCTGGTGGATATACAAGACTACTGCGG 225
                      ******** ***************************************************

consensus_4984#0      ACTAGGATACGGGTTGGCGATGCTGCACCAATGGCATACATTGAGCATTCAAAAAAAAAA 420
consensus_4984#1      ACTAGGATACGGGTTGGCGATGCTGCACCAATGGCATACATTGAG--------------- 270
                      *********************************************               

consensus_4984#0      TCATCCGTTTCTTTCACTAAATCAAGAATTGCAGAAGGTTTGTCGACCGGGAGAATGAAC 480
consensus_4984#1      --------------------------------------TTTGTCGACGGGGAGAATGAAC 292
                                                            ********* ************

consensus_4984#0      TTCGAGAGGCAAAACCTGCAACACCACAGCCACCTCAGCGGGTCCCTCTTGATCCATGGA 540
consensus_4984#1      TTCGAGAGGCAACACCTGCAACACCACAGCCACCTCAGCGGGTCCCTCTTGATCCATGGA 352
                      ************ ***********************************************

consensus_4984#0      CCAAGTCACTCGCCAGCAAACAATGGGCAGGTCCTAAAATCAGCCAGAACTCCGGAGCAG 600
consensus_4984#1      CCAAGTCACTCGCCAGCAAACAATGGGCAGGTCCTAAAATCAGCCAGAACTCCGGAGCAG 412
                      ************************************************************

consensus_4984#0      AAGGCTTATGACAAACCAGAGCGTTCTCTAGCTTTATTTTATGTTGTTGAGAGGTTCTTT 660
consensus_4984#1      AAGGCTTATGACAAACCAGAGCGTTCTCTAGCTTTATTTTATGTTGTTGAGAGGTTCTTT 472
                      ************************************************************

consensus_4984#0      TGATCTTTAGAACATGAATAACATTATGCAAGATACTTGTTCTATATGATAATTCT---- 716
consensus_4984#1      TGATCTTTAGAACATGAATAACATTATGCAAGATACTTGTTCTATATGATAATTCTGTTA 532
                      ********************************************************    

consensus_4984#0      -------------
consensus_4984#1      GCGATCAATGTCT 545