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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4987#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1467 fasta sequence
[CTATTATTCGTGAAGCTCACGCGCACCTTCTCCTCTCCGCCATGGCCGCCGCTCGCTGCCTCCCGCTCCGGGCCTCGCCGCCGGAGGTCGCCAAGGCCTTCTCCTCCTCCATCCCTGCCTCCTCCTCCTCCTCCTCCTCCTCTTCCTCCACCACCACCGCGGCCGCCTCTCTCCCTCTCCGCGCCGCCGTTCCCCCGAGCTCCGGCCGCCGTATCCCGCCGCTCCGGTGCGCCTCCTCCTCCTCGTCGTCGCAGGGCTCCGCGTCGCCGGATATCGCCGTGCTCCTCGAAGTGGAAGGAGTTCTTGCAGATGTGTATCGCTTCGGCAATCGCCAAGCTTTCAATGTAGCATTTCAAAATCTTGGGCTGGATTGTGCAAATTGGACAGAGCCAATATATGCTGATTTAGTGAGGAAAGCTAGTGGCGACGAGGAAAGGATGTTGTTATTATTCTTCAACAGAATTGGGTGGCCTACTTCTTTGCCAACTAACGAGAAAGAATCATTTATGAAAAGTGTTCTTCGTGAAAAGCTGAAAGCTTTGGAAGTGTTCTCAGCTTCTGATAGCTTACCACTGCGGCCTGGAGTTGAACAGTTCATTGATGATGCGCTTAATGAGGGTGTGCCTGTCGCCATATTGACAACATACGGGAGAAATGGAGAGAAAACTTCAAGATATATCATTGAAAAATTAGGCCAAGAGAGAACATCAAAAATACATATTGTTGGGAAAGAAGAGGTTGAAAGAAGCTTATATGGACAACTTGTTCTTGGTGAAGGAGTAGCCTCCAGTTTGGATGAACAGCTAGTTAAGGAAGCACAAAAGGCTGCTTCTGCAGAAAAGCAGAGGATAGCAGAAGAAGTTGCGTCCATTCTGAAACTTAGTGTTGATATCAATGCAGCGTCTAAAAGCTCCGAGAAGATTATTGTCACTCTACGCGCTGGATCCGAGTATGTTGGACGGGACGTGCAAAACTGTGTTCTTGTCGCAGGTAGCCAATCTGGCGTTCTTGCAGCTGAGCGCATTGGTATGCCATGCATAGTTGTTAGAAGCAGCCTAACCGCCAGAGCTGAGTTTCACTCTGCGAAGGCCGTCATGGATGGATTTGGTGGTACTGACTTGACCATATCGAAACTATTGAGCAAGAAGTGGTCTTGACAACTCGGCACTACATTGGAGTTGCCTGCTACTAGTTTGAATTTGTATGTAACCCATGGATTGGGTATATGTTACAACCAAAATGAGGCCTCTATGTAGTACATTGCAGAAAGAAAACTATGAGAAGCACAAGCTACTTCAGGCATCATTTTTTTTTTGGGAACAGAAAATGTACTGAACTCGCTGTACTTGGACGAGGCAATTGAACTCATTGTCTGGTTTGGTCTTTGCATAAAAGTGAGTAATAAGATGGTGATTTTTCATCAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AK067843 [CTATTATTCGTGAAGCTCACGCGCACCTTCTCCTCTCCGCCATGGCCGCCGCTCGCTGCCTCCCGCTCCGGGCCTCGCCGCCGGAGGTCGCCAAGGCCTTCTCCTCCTCCATCCCTGCCTCCTCCTCCTCCTCCTCCTCCTCTTCCTCCACCACCACCGCGGCCGCCTCTCTCCCTCTCCGCGCCGCCGTTCCCCCGAGCTCCGGCCGCCGTATCCCGCCGCTCCGGTGCGCCTCCTCCTCCTCGTCGTCGCAGGGCTCCGCGTCGCCGGATATCGCCGTGCTCCTCGAAGTGGAAGGAGTTCTTGCAGATGTGTATCGCTTCGGCAATCGCCAAGCTTTCAATGTAGCATTTCAAAATCTTGGGCTGGATTGTGCAAATTGGACAGAGCCAATATATGCTGATTTAGTGAGGAAAGCTAGTGGCGACGAGGAAAGGATGTTGTTATTATTCTTCAACAGAATTGGGTGGCCTACTTCTTTGCCAACTAACGAGAAAGAATCATTTATGAAAAGTGTTCTTCGTGAAAAGCTGAAAGCTTTGGAAGTGTTCTCAGCTTCTGATAGCTTACCACTGCGGCCTGGAGTTGAACAGTTCATTGATGATGCGCTTAATGAGGGTGTGCCTGTCGCCATATTGACAACATACGGGAGAAATGGAGAGAAAACTTCAAGATATATCATTGAAAAATTAGGCCAAGAGAGAACATCAAAAATACATATTGTTGGGAAAGAAGAGGTTGAAAGAAGCTTATATGGACAACTTGTTCTTGGTGAAGGAGTAGCCTCCAGTTTGGATGAACAGCTAGTTAAGGAAGCACAAAAGGCTGCTTCTGCAGAAAAGCAGAGGATAGCAGAAGAAGTTGCGTCCATTCTGAAACTTAGTGTTGATATCAATGCAGCGTCTAAAAGCTCCGAGAAGATTATTGTCACTCTACGCGCTGGATCCGAGTATGTTGGACGGGACGTGCAAAACTGTGTTCTTGTCGCAGGTAGCCAATCTGGCGTTCTTGCAGCTGAGCGCATTGGTATGCCATGCATAGTTGTTAGAAGCAGCCTAACCGCCAGAGCTGAGTTTCACTCTGCGAAGGCCGTCATGGATGGATTTGGTGGTACTGACTTGACCATATCGAAACTATTGAGCAAGAAGTGGTCTTGACAACTCGGCACTACATTGGAGTTGCCTGCTACTAGTTTGAATTTGTATGTAACCCATGGATTGGGTATATGTTACAACCAAAATGAGGCCTCTATGTAGTACATTGCAGAAAGAAAACTATGAGAAGCACAAGCTACTTCAGGCATCATTTTTTTTTTGGGAACAGAAAATGTACTGAACTCGCTGTACTTGGACGAGGCAATTGAACTCATTGTCTGGTTTGGTCTTTGCATAAAAGTGAGTAATAAGATGGTG ]
[+] EMBL AU085951 [ AGTTGCCTGCTACTAGTTTGAATTTGTATGTAACCCATGGATTGGGTATATGTTNCAACCAAAATNAGGCCTNTATGTAGTNCATTGCANAAAGAAAACTATNAGAAGCCCAAGCTACTTCAGGCATCATTTTTTTTTTGGGAACAGAAAATGTACTGAACTCNCTGNACTTGGACGAGGCAATTGAACNCATTGTCTGGTTTGGTCTTTGCATAAAAGTGAGTAATAANATGGTGATTTTTCATCAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_4987#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 439 fasta sequence
[GGNGNAGCGGNTGGGNCGAGTATGTTGGACGGGACGTGCAAAACTGTGTTCTTGTCGCAGGTAGCCAATCTGGCGTTCTTGCAGCTGAGCGCATTGGTATGCCATGCATAGTTGTTAGAAGCAGCCTAACCGCCAGAGCTGAGTTTCACTCTGCGAAGGCCGTCATGGATGGATTTGGTGGTACTGACTTGACCATATCGAAACTATTGAGCAAGAAGTGGTCTTGACAACTCGGCACTACATTGGAGTTGCCTGCTACTAGTTTGAATTTGTATGTAACCCATGGATTGGGTATATGTTACAACCAAAATGAGGCCTCTATGTAGNACATTGCAGAAGAAAACTATGAGAAGCACAAGCTACTTCAGGCATCATTTTTTTTTTTGGGACAGAAATGTACCTAACTGNTGTACTTGGCGGGGCAATTAACTCATTNCTT]
[+] EMBL OSC3251 [GGNGNAGCGGNTGGGNCGAGTATGTTGGACGGGACGTGCAAAACTGTGTTCTTGTCGCAGGTAGCCAATCTGGCGTTCTTGCAGCTGAGCGCATTGGTATGCCATGCATAGTTGTTAGAAGCAGCCTAACCGCCAGAGCTGAGTTTCACTCTGCGAAGGCCGTCATGGATGGATTTGGTGGTACTGACTTGACCATATCGAAACTATTGAGCAAGAAGTGGTCTTGACAACTCGGCACTACATTGGAGTTGCCTGCTACTAGTTTGAATTTGTATGTAACCCATGGATTGGGTATATGTTACAACCAAAATGAGGCCTCTATGTAGNACATTGCAGAAGAAAACTATGAGAAGCACAAGCTACTTCAGGCATCATTTTTTTTTTTGGGACAGAAATGTACCTAACTGNTGTACTTGGCGGGGCAATTAACTCATTNCTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4987#0 CTATTATTCGTGAAGCTCACGCGCACCTTCTCCTCTCCGCCATGGCCGCCGCTCGCTGCC 60
consensus_4987#1 ------------------------------------------------------------
consensus_4987#0 TCCCGCTCCGGGCCTCGCCGCCGGAGGTCGCCAAGGCCTTCTCCTCCTCCATCCCTGCCT 120
consensus_4987#1 ------------------------------------------------------------
consensus_4987#0 CCTCCTCCTCCTCCTCCTCCTCTTCCTCCACCACCACCGCGGCCGCCTCTCTCCCTCTCC 180
consensus_4987#1 ------------------------------------------------------------
consensus_4987#0 GCGCCGCCGTTCCCCCGAGCTCCGGCCGCCGTATCCCGCCGCTCCGGTGCGCCTCCTCCT 240
consensus_4987#1 ------------------------------------------------------------
consensus_4987#0 CCTCGTCGTCGCAGGGCTCCGCGTCGCCGGATATCGCCGTGCTCCTCGAAGTGGAAGGAG 300
consensus_4987#1 ------------------------------------------------------------
consensus_4987#0 TTCTTGCAGATGTGTATCGCTTCGGCAATCGCCAAGCTTTCAATGTAGCATTTCAAAATC 360
consensus_4987#1 ------------------------------------------------------------
consensus_4987#0 TTGGGCTGGATTGTGCAAATTGGACAGAGCCAATATATGCTGATTTAGTGAGGAAAGCTA 420
consensus_4987#1 ------------------------------------------------------------
consensus_4987#0 GTGGCGACGAGGAAAGGATGTTGTTATTATTCTTCAACAGAATTGGGTGGCCTACTTCTT 480
consensus_4987#1 ------------------------------------------------------------
consensus_4987#0 TGCCAACTAACGAGAAAGAATCATTTATGAAAAGTGTTCTTCGTGAAAAGCTGAAAGCTT 540
consensus_4987#1 ------------------------------------------------------------
consensus_4987#0 TGGAAGTGTTCTCAGCTTCTGATAGCTTACCACTGCGGCCTGGAGTTGAACAGTTCATTG 600
consensus_4987#1 ------------------------------------------------------------
consensus_4987#0 ATGATGCGCTTAATGAGGGTGTGCCTGTCGCCATATTGACAACATACGGGAGAAATGGAG 660
consensus_4987#1 ------------------------------------------------------------
consensus_4987#0 AGAAAACTTCAAGATATATCATTGAAAAATTAGGCCAAGAGAGAACATCAAAAATACATA 720
consensus_4987#1 ------------------------------------------------------------
consensus_4987#0 TTGTTGGGAAAGAAGAGGTTGAAAGAAGCTTATATGGACAACTTGTTCTTGGTGAAGGAG 780
consensus_4987#1 ------------------------------------------------------------
consensus_4987#0 TAGCCTCCAGTTTGGATGAACAGCTAGTTAAGGAAGCACAAAAGGCTGCTTCTGCAGAAA 840
consensus_4987#1 ------------------------------------------------------------
consensus_4987#0 AGCAGAGGATAGCAGAAGAAGTTGCGTCCATTCTGAAACTTAGTGTTGATATCAATGCAG 900
consensus_4987#1 ------------------------------------------------------------
consensus_4987#0 CGTCTAAAAGCTCCGAGAAGATTATTGTCACTCTACGCGCTGGATCCGAGTATGTTGGAC 960
consensus_4987#1 ------------------------------GGNGNAGCGGNTGGGNCGAGTATGTTGGAC 30
*** * **************
consensus_4987#0 GGGACGTGCAAAACTGTGTTCTTGTCGCAGGTAGCCAATCTGGCGTTCTTGCAGCTGAGC 1020
consensus_4987#1 GGGACGTGCAAAACTGTGTTCTTGTCGCAGGTAGCCAATCTGGCGTTCTTGCAGCTGAGC 90
************************************************************
consensus_4987#0 GCATTGGTATGCCATGCATAGTTGTTAGAAGCAGCCTAACCGCCAGAGCTGAGTTTCACT 1080
consensus_4987#1 GCATTGGTATGCCATGCATAGTTGTTAGAAGCAGCCTAACCGCCAGAGCTGAGTTTCACT 150
************************************************************
consensus_4987#0 CTGCGAAGGCCGTCATGGATGGATTTGGTGGTACTGACTTGACCATATCGAAACTATTGA 1140
consensus_4987#1 CTGCGAAGGCCGTCATGGATGGATTTGGTGGTACTGACTTGACCATATCGAAACTATTGA 210
************************************************************
consensus_4987#0 GCAAGAAGTGGTCTTGACAACTCGGCACTACATTGGAGTTGCCTGCTACTAGTTTGAATT 1200
consensus_4987#1 GCAAGAAGTGGTCTTGACAACTCGGCACTACATTGGAGTTGCCTGCTACTAGTTTGAATT 270
************************************************************
consensus_4987#0 TGTATGTAACCCATGGATTGGGTATATGTTACAACCAAAATGAGGCCTCTATGTAGTACA 1260
consensus_4987#1 TGTATGTAACCCATGGATTGGGTATATGTTACAACCAAAATGAGGCCTCTATGTAGNACA 330
******************************************************** ***
consensus_4987#0 TTGCAGAAAGAAAACTATGAGAAGCACAAGCTACTTCAGGCATCATTTTTTTTTTGGGAA 1320
consensus_4987#1 TTGCAGAA-GAAAACTATGAGAAGCACAAGCTACTTCAGGCATCATTTTTTTTTTTGGGA 389
******** ********************************************** ** *
consensus_4987#0 CAGAAAATGTACTGAACTCGCTGTACTTGGACGAGGCAATTGAACTCATTGTCTGGTTTG 1380
consensus_4987#1 CAGAAA-TGTACCTAACT-GNTGTACTTGG-CGGGGCAATT-AACTCATTNCTT------ 439
****** ***** **** * ********* ** ******* ******** *
consensus_4987#0 GTCTTTGCATAAAAGTGAGTAATAAGATGGTGATTTTTCATCAGCAAAAAAAAAAAAAAA 1440
consensus_4987#1 ------------------------------------------------------------
consensus_4987#0 AAAAAAAAAAAAAAAAAAAAAAAAAAA 1467
consensus_4987#1 ---------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||