These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4995#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1973 fasta sequence [TGCGTGACTGCCAGCAGCAGCAGCAAGCGGAGGAGAGGAGAGACGCGCCGCCGCCGCCGCCGCCTGCGAAGCAAAGCGGCGAGCGAGAAGCCAACGGCGCATCAAAGTGAGGATATGGAGAGGGGCGCCGCCGCCGCAGGAGCGCTCTCATGCACCTTCCGCTCCCCTTCCCCTTCCCCGACGTCCCCGGCCGCGCCCCATTGGCGGCCTCTCCTCGGCTTCCGCTCCCGCTCCCGCTCGCGTGGCCGGGGCTGGGGCCAGCGCGCGGTGGTCGCCGGGGCACCGCGGTTATTCCTGCCGCCACCATGCCGGCGCTTCAGATACTGCAGTCAAAGCAAGCTTCTAGGCACGAACAAAGGGCAAAACAGATGCTCGTTGGCAACTTTCAGCTCATTTGGACAGTCAGGGATCAGTCTGAACAATGAAGATTTAGTGAAAGATAAGCTCCTAATAGATTGTGGGGAAGATCAAGATTGTGTGATTGATGGGATAGTTGCCTTGGGAAAGTTTGATGCCCTTCACATTGGCCATCGAGAATTGGCAATGTATGCTTCTAAGGCAGGAACTCCCTTTCTTCTTTCTTTTGTGGGAATTGCTGAGGTTCTTGGCTGGGAGTATAGGCCTCCTATAGTTGCTCAGTGTGATCGGAAGCGAGTGCTCACCTCTTGGGCTCCATACTGTAAGAATGTAGTGCCTATTGAATATCAAGTTGAGTTTTCAAAGGTCAGGTACCTAACTCCGCGGCAATTCGTTGAGAGGTTATCAAGGGATCTTAAAATACAAGGTGCTGTAGCAGGTGAAAACTACAGATTTGGCTACAGGGCATCTGGCGATGCAGCTGAGCTAGTGAAACTATGTGAAGAATTTGGTTTAAGTGCATTTATTGTACGGTCAGTCATGGACACAGCTAGATCTTATAATGGAGTTACAACCTCCGTAAATTCAAGCGACAAGGGGCAGGTTTCTTCTAGTCGTGTTCGCCATGCTTTGGCTATGGGTGATATGGAATATGTTTCTGAATTACTAGGGAGGAAACACCGCCTTGTGCTGACAGTTAAGGAAAACCACCTTCAGGAAAGGAAAAGGATCATGCTGCCAAAATCTTGCATGTTGAACATGCCACCAGCTGATGGTTTGTATGAGAATTGTGACCTTCTTAATGGAGGCCATCTTGGACTATGCAGGGTGATCATAAACTCAGAGACCATTGTAATTGAGATGAAAGATGAGAACAGTTTATTACCAAATACTATTCAAGAAAATCAGCAATTAGGTATTGAATTTGGATGATATGGTACAGCTCAATTCATGATTGGTGACATGGCAGGTCATATTTTGTACTATATCTTCATTATATCTGGCACCTTGCGGATTAGTTTGTGTTGATGCTAAATAGTGCTGATTTT-ATCTGGAGGGGATATAGAGCAAGAAAGAAAAAAACTGAGAACTTTGTATTCAAGGGTGTATACCTCATCGTGATCAAGCCAAAGAGCATCTTATAGATGAACAGAGATTTTGTGCA-AATTTGCATTTCATGCAACGAGAAGACATGGTAGTCAGAGAGGACATTGTCC-TTTTTCTCCCTGGGAATTGGCAACGATAGAACTGACTAGCTTCTAGCTAGCTGTATCAGCAAAGCTGAAGCACAAGGAAACATACAAGGGAACTCA-TTTCCCAAATCCCACCTAGTA-CGTTTTTCCAGCTTATGAAATTGTGATTTGTA-CAAATAGGTTTCATTTACACAGCAACTTCCCATTGTTAGATAGCAGCTTGTTCCATCAACAGTTAATG-AAATATGTTGCTTGACCTTCGAACATCTGGGNAGGGCTGGGCCCTNACAAC-GTNGGGTTAANCCAAATCTAGCTTATGAAATTGTGATTTGCACAAATAGGTTTCATTTACACAGCACTTTCCATTATTAGATTGCTGCCTGTTCTATCAACAGTTAATGAAATGTGTTGCTTGATCAAAAA] [+] EMBL AK069505 [TGCGTGACTGCCAGCAGCAGCAGCAAGCGGAGGAGAGGAGAGACGCGCCGCCGCCGCCGCCGCCTGCGAAGCAAAGCGGCGAGCGAGAAGCCAACGGCGCATCAAAGTGAGGATATGGAGAGGGGCGCCGCCGCCGCAGGAGCGCTCTCATGCACCTTCCGCTCCCCTTCCCCTTCCCCGACGTCCCCGGCCGCGCCCCATTGGCGGCCTCTCCTCGGCTTCCGCTCCCGCTCCCGCTCGCGTGGCCGGGGCTGGGGCCAGCGCGCGGTGGTCGCCGGGGCACCGCGGTTATTCCTGCCGCCACCATGCCGGCGCTTCAGATACTGCAGTCAAAGCAAGCTTCTAGGCACGAACAAAGGGCAAAACAGATGCTCGTTGGCAACTTTCAGCTCATTTGGACAGTCAGGGATCAGTCTGAACAATGAAGATTTAGTGAAAGATAAGCTCCTAATAGATTGTGGGGAAGATCAAGATTGTGTGATTGATGGGATAGTTGCCTTGGGAAAGTTTGATGCCCTTCACATTGGCCATCGAGAATTGGCAATGTATGCTTCTAAGGCAGGAACTCCCTTTCTTCTTTCTTTTGTGGGAATTGCTGAGGTTCTTGGCTGGGAGTATAGGCCTCCTATAGTTGCTCAGTGTGATCGGAAGCGAGTGCTCACCTCTTGGGCTCCATACTGTAAGAATGTAGTGCCTATTGAATATCAAGTTGAGTTTTCAAAGGTCAGGTACCTAACTCCGCGGCAATTCGTTGAGAGGTTATCAAGGGATCTTAAAATACAAGGTGCTGTAGCAGGTGAAAACTACAGATTTGGCTACAGGGCATCTGGCGATGCAGCTGAGCTAGTGAAACTATGTGAAGAATTTGGTTTAAGTGCATTTATTGTACGGTCAGTCATGGACACAGCTAGATCTTATAATGGAGTTACAACCTCCGTAAATTCAAGCGACAAGGGGCAGGTTTCTTCTAGTCGTGTTCGCCATGCTTTGGCTATGGGTGATATGGAATATGTTTCTGAATTACTAGGGAGGAAACACCGCCTTGTGCTGACAGTTAAGGAAAACCACCTTCAGGAAAGGAAAAGGATCATGCTGCCAAAATCTTGCATGTTGAACATGCCACCAGCTGATGGTTTGTATGAGAATTGTGACCTTCTTAATGGAGGCCATCTTGGACTATGCAGGGTGATCATAAACTCAGAGACCATTGTAATTGAGATGAAAGATGAGAACAGTTTATTACCAAATACTATTCAAGAAAATCAGCAATTAGGTATTGAATTTGGATGATATGGTACAGCTCAATTCATGATTGGTGACATGGCAGGTCATATTTTGTACTATATCTTCATTATATCTGGCACCTTGCGGATTAGTTTGTGTTGATGCTAAATAGTGCTGATTTT ATCTGGAGGGGATATAGAGCAAGAAAGAAAAAAACTGAGAACTTTGTATTCAAGGGTGTATACCTCATCGTGATCAAGCCAAAGAGCATCTTATAGATGAACAGAGATTTTGTGCA AATTTGCATTTCATGCAACGAGAAGACATGGTAGTCAGAGAGGACATTGTCC TTTTTCTCCCTGGGAATTGGCAACGATAGAACTGACTAGCTTCTAGCTAGCTGTATCAGCAAAGCTGAAGCACAAGGAAACATACAAGGGAACTCA TTTCCCAAATCCCACCTAGTA CGTTTTTCCAGCTTATGAAATTGTGATTTGTA CAAATAGGTTTCATTTACACAGCAACTTCCCATTGTTAGATAGCAGCTTGTTCCATCAACAGTTAATG AAATATGTTGC ] [+] EMBL CA763932 [ TTCTAGTCGTGTTCGCCATGCTTTGGCTATGGGTGATATGGAATATGTTTCTGAATTACTAGGGAGGAAACACCGCCTTGTGCTGACAGTTAAGGAAAACCACCTTCAGGAAAGGAAAAGGATCATGCTGCCAAAATCTTGCATGTTGAACATGCCACCAGCTGATGGTTTGTATGAGAATTGTGACCTTGTTAATGGAGGCCATCTTGGACTATGCAGGGTGATCATAAACTCAGAGACCATTGAAATTGAGATGAAAGATGAGAACAGTTTATTACCAAATACTATTCAAGAAAATCAGCAATTAGGTATTGAATTTGGATGATATGGTACAGCTCAATTCATGATTGGTGATATGGCAGGTCATATTTTGTACTATATCTTCATTATATCTGGCACCTTGCGGATTAGTTTGTGTTGATGCTAAATAGTGCTGATTTT ATCTGGAGGGGATATAGAGCAAGAAAGAAAAAAACTGAGAACTTTGTATTCAAGGGTGTATACCTCATCGTGATCAAGCCAAAGAGCATCTTATAGATGAACAGAGATTTTGTGCA AATTTGCATTTCATGCAACGAGAAGACATGGTAGTCAGAGAGGACATTGNCCNTTTCTCTNCCTGGGAATTGGCTACGATAGAACTGACTAGCTTCTAGCTAGCTGTATCAGCAAAGCTGAAGCNCAAGGAAACATACCANGGNACTCANTTTCCCAAAT CCACCTANTACCGNTTTTNCAGCTTATGNAATTGGGANTTGGACCAAANAGGNTTCATTTACACAGCAACTTNCCATTGGTANANAGCAGCTTGGTNCATCAACAGTGGAGGNAAAAAGGTGGCTTGACCTTCGAACATCTGGGNAGGGCTGGGCCCTNACAACGGTNGGGTTAANCCAA ] [+] EMBL BI805813 [ CTT CGGATTAGTTTGT TTGATGCTAAATAGTGCTGATTTTGATCTGGAGGGGATATAGA CAAGAAAG AAAAAACTGAGAACTTTGTATTCAAGGGTGTATACCTCATCGTGATCAAGCCCAAGAGCATCTTATAGATGAACAGAGATTTTGTGCACAATTTGCATTTCATGCAACGAGAAGACATGGTAGTCAGAGAGGAC TTGTCC TTTTTCT CCTGGGAATTGGCAACGATAGAACTGACTAGCTTCTAGCTAGCTGTATCAGC AAGCTGAAGCACAAGGAAACATACAAGGGAACTCA TTTCCC AATCCCACCTAGTA CGTTTTTCCAGCTTATGAAATTGTGATTTGTA C AATAGGTTTCATTTACACAGC ACTTCCCATTGTTAGATAGCAGCTTGTTCCATCAACAGTTAATG AAATATGTTGCTTGATCTTCGAACATCTGGAGAGGTCTGGTCCCTAACAAC GTTGAGTTTAGCCTAATCTAGCTTATGAAATTGTGATTTGCACAAATAGGTTTCATTTACACAGCACTTTCCATTATTAGATTGCTGCCTGTTCTATCAACAGTTAATGAAATGTGTTGCTTGATCAAAAA] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||