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Oryza sativa
cluster # 4996 cluster # 4996       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4996#0 length = 1353 sequences # 3  

consensusID : consensus_4996#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1353
fasta sequence
                              [TGTAAATGGAGATGACGCATTCAGAAATTCAAGGTTCAAACTCATCCCGTACATCTCAAAGGGGTCTTGGATAGTAAAGCAAAGTGTGGGAAAGAAAGCCTGTTTGGTTGGTCAAGCACTAGAGATCAATTATTTCCGTGGAAGCAATTATTTGGAGCTTGGAGTTGATATAGGCTCGTCAACAGTTGCACGGGGTGTGGTGAGCCTTGTGCTTGGCTACTTGAACAACCTGGTGATTGAAATGGCCTTCCTGGTACAGGGCAACACGCAAGAAGAGCTCCCGGAGTTCCTCCTGGGCACCTGCCGACTGAACTACCTCGACGCGTCCAAGGCAGTGTCCATAGACGAGTGCTGAAGGCGTCATCAGCCACCATTGACCCCGCC-AACATTCTTTCTGAGGCCAATTACAGTAGTACAGCGAACCAAGGAAAAAAAGAGGCTCAAGTCATTCGTTTC-CCCTGCCGGCCCCGGTCCAAAGATACTCCTTGTATTGCTCCACACAAAAGCCGAAGAATTCTGGCTCATTCTGCCTGC-CTGCCAGCACTGTACATTCTCCTCTTGCCGACAGGTATTGCGATGTAATGATGATAGCAATCTACGCCCATTCTTTGGCATGCCATCATCGAGAAAAAGAGAAAGGGAAGTGTATCCTAACGGTGACCCCCGTGGCGTTCATTCTGACCTGGGACTCGTCTCAGCTTACTGTGAGTAGTGAGATTGCATCATTAGATCCAACTCCAAAGCAACCCATTACCGGACACTTGACTACTCCTGTTCCATAATATTTCTCCTGAGTTCGAGTGAGTGGTGGCAGCCATGATTATACCAGAGGGACTCGTCAACAACTGAAAGCGACCAAAGTCACAGGGATTGATATACTATGCTCCTACCATTGGTAAGGAAGGAACACCCAGGCAGACGCACTCACAACCCAAACCCTTTCTTTTTGCCTAGTCACTTGAGCTAGAAGGGAGGGATGGAACATGAGCAAGTGGAGCCGGCATTTCCCTTTGTTCTTGAGAAAAGACAGGACATGCAAACTATGCTTAAGGCAGGGACGGATAGAGATGATGGTGTGTGTCGCCGTCGCAAAGCGGCGAGACATCGTGTGGTCGAGATCGCTGTGCGTCGTCCGTCGTCTGCGTGCTTGGCTAGCTAACCTAAAACTAAAAGGCTTCCGTCTGCCCGTGCACCCCGTCGCCGCTGTAGCAGCCGACGTGACAGGTGAACCGATCTCTCCTGCATTTTTTGCTCACACAAATTCTGTACCACTAGTAGTAGTTTGCCGCGTCATCGCTTCGAAATGGAGAGAGATTAGTGTGGGGAGAAGTATATTTAAGTGGACACTTGCAG]

[+] EMBL AK107572             [TGTAAATGGAGATGACGCATTCAGAAATTCAAGGTTCAAACTCATCCCGTACATCTCAAAGGGGTCTTGGATAGTAAAGCAAAGTGTGGGAAAGAAAGCCTGTTTGGTTGGTCAAGCACTAGAGATCAATTATTTCCGTGGAAGCAATTATTTGGAGCTTGGAGTTGATATAGGCTCGTCAACAGTTGCACGGGGTGTGGTGAGCCTTGTGCTTGGCTACTTGAACAACCTGGTGATTGAAATGGCCTTCCTGGTACAGGGCAACACGCAAGAAGAGCTCCCGGAGTTCCTCCTGGGCACCTGCCGACTGAACTACCTCGACGCGTCCAAGGCAGTGTCCATAGACGAGTGCTGAAGGCGTCATCAGCCACCATTGACCCCGCC AACATTCTTTCTGAGGCCAATTACAGTAGTACAGCGAACCAAGGAAAAAAAGAGGCTCAAGTCATTCGTTTC CCCTGCCGGCCCCGGTCCAAAGATACTCCTTGTATTGCTCCACACAAAAGCCGAAGAATTCTGGCTCATTCTGCCTGC CTGCCAGCACTGTACATTCTCCTCTTGCCGACAGGTATTGCGATGTAATGATGATAGCAATCTACGCCCATTCTTTGGCATGCCATCATCGAGAAAAAGAGAAAGGGAAGTGTATCCTAACGGTGACCCCCGTGGCGTTCATTCTGACCTGGGACTCGTCTCAGCTTACTGTGAGTAGTGAGATTGCATCATTAGATCCAACTCCAAAGCAACCCATTACCGGACACTTGACTACTCCTGTTCCATAATATTTCTCCTGAGTTCGAGTGAGTGGTGGCAGCCATGATTATACCAGAGGGACTCGTCAACAACTGAAAGCGACCAAAGTCACAGGGATTGATATACTATGCTCCTACCATTGGTAAGGAAGGAACACCCAGGCAGACGCACTCACAACCCAAACCCTTTCTTTTTGCCTAGTCACTTGAGCTAGAAGGGAGGGATGGAACATGAGCAAGTGGAGCCGGCATTTCCCTTTGTTCTTGAGAAAAGACAGGACATGCAAACTATGCTTAAGGCAGGGACGGATAGAGATGATGGTGTGTGTCGCCGTCGCAAAGCGGCGAGACATCGTGTGGTCGAGATCGCTGTGCGTCGTCCGTCGTCTGCGTGCTTGGCTAGCTAACCTAAAACTAAAAGGCTTCCGTCTGCCCGTGCACCCCGTCGCCGCTGTAGCAGCCGACGTGACAGGTGAACCGATCTCTCCTGCATTTTTTGCTCACACAAATTCTGTACCACTAGTAGTAGTTTGCCGCGTCATCGCTTCGAAATGGAGAGAGATTAGTGTGGGGAGAAGTATATTTAAGTGGACACTTGCAG]
[+] EMBL BI812444             [                                                                                                     cTTTTGTGGTTCAACCACTAGAGATCAATTATTTCCCGGGAACCAATTATTTGGAGCTTGGAGTTAATATA GCTCGTCAACA TTGCACGGGGT TGGTGACCCTTGTGCTTGGCTACTTGAACAACCTGGTGATTGAAATGCCCTTCCTGGTACAGGGCAACACGCAAGAAGAGCTCCCGGAGTTCCTCCTGGGCACCTGCCGACTGAACTACCTCGACGCGTCCAAGCCAGTGTCCATAGACGAGTGCTGAAGGCGTCATCAGCCACCATTGACCCCGCCAAACATTCTTTCTGAGGCCAATTACAGTAGTACAGCGAACCAAGGAAAAAAAGAGGCTCAAGTCATTCGTTTCACCCTGCCGGCCCCGGTCCAAAGATACTCCTTGTATTGCTCCACACAAAAGCCGAAGAATTCTGGCTTATTCTGCCTGCACTGCCAGCACTGTACATTCTCCTCTTGCCGACAGGTATTGCGATGTAATGATGATAGCAATCTACGCCCATTCTTTGGCATGCCATCATCGAGAAAAAGAGAAAGGGAAGTGTATCCTAACGGTGAaaaaaaaaa                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL AU166511             [                                                                                                                                                                                                                                                                                                                                             AGTGTCCATAGACGAGTGCTGAAGGCGTCATCAGCCACCATTGACCCCGCC AACATTCTTTCTGAGGCCAATTACAGTAGTACAGCGAACCAAGGAAAAAAAGAGGCTCAAGTCATTCGTTTC CCCTGCCGGCCCCGGTCCAAAGATACTCCTTGTATTGCTCCACACAAAAGCCGAAGAATTCTGGCTCATTCTGCCTGC CTGCCAGCACTGTACATTCTCCTCTTGCCGACAGGTATTGCGATGTAATGATGATAGCAATCTACGCCCATTCTTTGGCATGCCATCATCGAGAAAAAGAGAAAGGGAAGTGTATCCTAACGGTGACCCCCGTGGCGTTCATTCTGACCTGGGACTCGTCTCAGCTTACTGTGAGTAGTGAGATTGCATCATTAGATCCAACTCCAAAGCAACCCATTACCGGACAaaaaaaaaa                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]


>consensus_4996#0 TGTAAATGGAGATGACGCATTCAGAAATTCAAGGTTCAAACTCATCCCGTACATCTCAAA GGGGTCTTGGATAGTAAAGCAAAGTGTGGGAAAGAAAGCCTGTTTGGTTGGTCAAGCACT AGAGATCAATTATTTCCGTGGAAGCAATTATTTGGAGCTTGGAGTTGATATAGGCTCGTC AACAGTTGCACGGGGTGTGGTGAGCCTTGTGCTTGGCTACTTGAACAACCTGGTGATTGA AATGGCCTTCCTGGTACAGGGCAACACGCAAGAAGAGCTCCCGGAGTTCCTCCTGGGCAC CTGCCGACTGAACTACCTCGACGCGTCCAAGGCAGTGTCCATAGACGAGTGCTGAAGGCG TCATCAGCCACCATTGACCCCGCCAACATTCTTTCTGAGGCCAATTACAGTAGTACAGCG AACCAAGGAAAAAAAGAGGCTCAAGTCATTCGTTTCCCCTGCCGGCCCCGGTCCAAAGAT ACTCCTTGTATTGCTCCACACAAAAGCCGAAGAATTCTGGCTCATTCTGCCTGCCTGCCA GCACTGTACATTCTCCTCTTGCCGACAGGTATTGCGATGTAATGATGATAGCAATCTACG CCCATTCTTTGGCATGCCATCATCGAGAAAAAGAGAAAGGGAAGTGTATCCTAACGGTGA CCCCCGTGGCGTTCATTCTGACCTGGGACTCGTCTCAGCTTACTGTGAGTAGTGAGATTG CATCATTAGATCCAACTCCAAAGCAACCCATTACCGGACACTTGACTACTCCTGTTCCAT AATATTTCTCCTGAGTTCGAGTGAGTGGTGGCAGCCATGATTATACCAGAGGGACTCGTC AACAACTGAAAGCGACCAAAGTCACAGGGATTGATATACTATGCTCCTACCATTGGTAAG GAAGGAACACCCAGGCAGACGCACTCACAACCCAAACCCTTTCTTTTTGCCTAGTCACTT GAGCTAGAAGGGAGGGATGGAACATGAGCAAGTGGAGCCGGCATTTCCCTTTGTTCTTGA GAAAAGACAGGACATGCAAACTATGCTTAAGGCAGGGACGGATAGAGATGATGGTGTGTG TCGCCGTCGCAAAGCGGCGAGACATCGTGTGGTCGAGATCGCTGTGCGTCGTCCGTCGTC TGCGTGCTTGGCTAGCTAACCTAAAACTAAAAGGCTTCCGTCTGCCCGTGCACCCCGTCG CCGCTGTAGCAGCCGACGTGACAGGTGAACCGATCTCTCCTGCATTTTTTGCTCACACAA ATTCTGTACCACTAGTAGTAGTTTGCCGCGTCATCGCTTCGAAATGGAGAGAGATTAGTG TGGGGAGAAGTATATTTAAGTGGACACTTGCAG



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)