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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5002#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1142 fasta sequence
[CGGTAGCGGCGGAGCTGGCGCCGCGCACGATCGCCCCCAGCCACAGCCATCCTCCTCTCGCCCGAGGTGAGCTCCGATCCGTCTTTGCCTTTGCCCCGATCGTACCCCGGCTGCGATGGAGGGGGGGAGCAACGACTTCCCGGGGGACCTCCTGCGCGCGGTCCTGCAGAGGCTGCCGCCGCCCGACCTCGCGAGGGCGGCGTGCGTCTGCCGGCTGTGGCGCGGGGTCGCCTCCGACCGCGCCGTGCTGGAGGCCGCCTTCGCGTCGCCCTGGGGGGTGCGCCGCGTCGTCGGCGAGCCGGAGACGAGGGCCTTCTGGCGCGCCGCGTCCCTCGCCCGGTTCGCGCTCTCGCACACCGTCCGCCGCGGGGACACCGTCCCCGGCATCGCGCTCAAGTACTCCATCCAGGTGACCGATATAAAACGTTTCAACAACATGATGAGCGACCATGGGATCTACTTGAGGGAGAGGCTTCTGATACCGATCAGCAATCCTGAAATTCTTCAGGGTAGCACATGCTACATTGAGATGGATTATAACGCTAGAAGAGAGGTTGCAGTCTTTTATCCCCAGGGACGCCCTAGTGGAAAAGCAGAATCCTCGACGAACACTGCTGCTGCAGAACGACGAAGCAGAAGGATTTTGGAGTCAGTCAAGCGAAGCTTGCATACCGATGACAGAACCGCTGCGTACTACTTATCTGTCACAGACGGTGATCCAAGGGCAGCCATGATGGAGTACTCTGAGGACCTAAGGTGGGAGAGGCAACAAACAGGCCACTAGATGTAAGGTCAATGGGAAGATAAGGGCATGGCATTTGCCGCTGCGTACTACTTATCTGTCACAGACGGTGATCCAAGGGCAGCCATGATGGAGTACTCTGAGGACCTAAGGTGGGAGCGGCAACAAACAGGCCACTAGATGTAATCATGTAAGGTCAATGGGAAGATAAGGGCATGGCATAATGATGCAGGTTATTGGAAGATCACTACTACCTGTTTGGCCGCTTGAACAATATATATGTGGTTTACCCTCTGTACATGTAATAATGTGAATTTGTGAACATATGTAATGTATCATCTTTTTTTTTCTCGGTGTGATGAACTTGATGAAATCCATAGCAATTGCTTTCTTTACATAT]
[+] EMBL AK070428 [CGGTAGCGGCGGAGCTGGCGCCGCGCACGATCGCCCCCAGCCACAGCCATCCTCCTCTCGCCCGAGGTGAGCTCCGATCCGTCTTTGCCTTTGCCCCGATCGTACCCCGGCTGCGATGGAGGGGGGGAGCAACGACTTCCCGGGGGACCTCCTGCGCGCGGTCCTGCAGAGGCTGCCGCCGCCCGACCTCGCGAGGGCGGCGTGCGTCTGCCGGCTGTGGCGCGGGGTCGCCTCCGACCGCGCCGTGCTGGAGGCCGCCTTCGCGTCGCCCTGGGGGGTGCGCCGCGTCGTCGGCGAGCCGGAGACGAGGGCCTTCTGGCGCGCCGCGTCCCTCGCCCGGTTCGCGCTCTCGCACACCGTCCGCCGCGGGGACACCGTCCCCGGCATCGCGCTCAAGTACTCCATCCAGGTGACCGATATAAAACGTTTCAACAACATGATGAGCGACCATGGGATCTACTTGAGGGAGAGGCTTCTGATACCGATCAGCAATCCTGAAATTCTTCAGGGTAGCACATGCTACATTGAGATGGATTATAACGCTAGAAGAGAGGTTGCAGTCTTTTATCCCCAGGGACGCCCTAGTGGAAAAGCAGAATCCTCGACGAACACTGCTGCTGCAGAACGACGAAGCAGAAGGATTTTGGAGTCAGTCAAGCGAAGCTTGCATACCGATGACAGAACCGCTGCGTACTACTTATCTGTCACAGACGGTGATCCAAGGGCAGCCATGATGGAGTACTCTGAGGACCTAAGGTGGGAGAGGCAACAAACAGGCCACTAGATGTAAGGTCAATGGGAAGATAAGGGCATGGCATTTGCCGCTGCGTACTACTTATCTGTCACAGACGGTGATCCAAGGGCAGCCATGATGGAGTACTCTGAGGACCTAAGGTGGGAGCGGCAACAAACAGGCCACTAGATGTAATCATGTAAGGTCAATGGGAAGATAAGGGCATGGCATAATGATGCAGGTTATTGGAAGATCACTACTACCTGTTTGGCCGCTTGAACAATATATATGTGGTTTACCCTCTGTACATGTAATAATGTGAATTTGTGAACATATGTAATGTATCATC ]
[-] EMBL CB657385 [ TATAAAACGTTTCAACAACATGATGAGCGACCATGGGATCTACTTGAGGGAGAGGCTTCTGATACCGATCAGCAATCCTGAAATTCTTCAGGGTAGCACATGCTACATTGAGATGGATTATAACGCTAGAAGAGAGGTTGCAGTCTTTTATCCCCAGGGACGCCCTAGTGGAAAAGCAGAATCCTCGACGAACACTGCTGCTGCAGAACGACGAAGCAGAAGGATTTTGGAGTCAGTCAAGCGAAGCTTGCATACCGATGACAGAACCGCTGCGTACTACTTATCTGTCACAGACGGTGATCCAAGGGCAGCCATGATGGAGTACTCTGAGGACCTAAGGTGGGAGAGGCAACAAACAGGCCACTAGATGTAAGGTCAATGGGAAGATAAGGGCATGGCATTTGCCGCTGCGTACTACTTATCTGTCACAGACGGTGATCCAAGGGCAGCCATGATGGAGTACTCTGAGGACCTAAGGTGGGAGCGGCAACAAACAGGCCACTAGATGTAATCATGTAAGGTCAATGGGAAGATAAGGGCATGGCATAATGATGCAGGTTATTGGAAGATCACTACTACCTGTTTGGCCGCTTGAACAATATATATGTGGTTTACCCTCTGTACATGTAATAATGTGAATTTGTGAACATATGTAATGTATCATCTTTTTTTTTCTCGGTGTGATGAACTTGATGAAATCCATAGCAATTGCTTTCTTTACATAT]
consensusID : consensus_5002#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 660 fasta sequence
[CGTGCCGATTCGGCACGAGCGACCATGGGATCTACTTGAGGGAGAGGCTTCTGATACCGATCAGCAATCCTGAAATTCTTCAGGGTAGCACATGCTACATTGAGATGGATTATAACGCTAGAAGAGAGGTTGCAGTCTTTTATCCCCAGGGACGCCCTAGTGGAAAAGCAGAATCCTCGACGAACACTGCTGCTGCAGAACGACGAAGCAGAAGGATTTTGGAGTCAGTCAAGCGAAGCTTGCATACCGATGACAGAACCGCTGCGTACTACTTATCTGTCACAGACGGTGATCCAAGGGCAGCCATGATGGAGTACTCTGAGGACCTAAGGTGGGAGAGGCAACAAACAGGCCACTAGATGTAAGGTCAATGGGAAGATAAGGGCATGGCATTTGCCGCTGCGTACTACTTATCTGTCACAGACGGTGATCCAAGGGCAGCCATGATGGAGTACTCTGAGGACCTAAGGTGGGAGCGGCAACAAACAGGCCACTAGATGTAATCATGTAAGGTCAATGGGAAGATAANGGCATGGCATAATGATGCAGGTTATTGGAAGATCACTACTACCTGTTTGGCCGCTTGAACAATATATATGTGGGTTACCCTCTGTACATGTAATAATGNGAATTTGNGAACATATGTAATGGATCATCTTT]
[+] EMBL BE230618 [CGTGCCGATTCGGCACGAGCGACCATGGGATCTACTTGAGGGAGAGGCTTCTGATACCGATCAGCAATCCTGAAATTCTTCAGGGTAGCACATGCTACATTGAGATGGATTATAACGCTAGAAGAGAGGTTGCAGTCTTTTATCCCCAGGGACGCCCTAGTGGAAAAGCAGAATCCTCGACGAACACTGCTGCTGCAGAACGACGAAGCAGAAGGATTTTGGAGTCAGTCAAGCGAAGCTTGCATACCGATGACAGAACCGCTGCGTACTACTTATCTGTCACAGACGGTGATCCAAGGGCAGCCATGATGGAGTACTCTGAGGACCTAAGGTGGGAGAGGCAACAAACAGGCCACTAGATGTAAGGTCAATGGGAAGATAAGGGCATGGCATTTGCCGCTGCGTACTACTTATCTGTCACAGACGGTGATCCAAGGGCAGCCATGATGGAGTACTCTGAGGACCTAAGGTGGGAGCGGCAACAAACAGGCCACTAGATGTAATCATGTAAGGTCAATGGGAAGATAANGGCATGGCATAATGATGCAGGTTATTGGAAGATCACTACTACCTGTTTGGCCGCTTGAACAATATATATGTGGGTTACCCTCTGTACATGTAATAATGNGAATTTGNGAACATATGTAATGGATCATCTTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5002#0 CGGTAGCGGCGGAGCTGGCGCCGCGCACGATCGCCCCCAGCCACAGCCATCCTCCTCTCG 60
consensus_5002#1 ------------------------------------------------------------
consensus_5002#0 CCCGAGGTGAGCTCCGATCCGTCTTTGCCTTTGCCCCGATCGTACCCCGGCTGCGATGGA 120
consensus_5002#1 ------------------------------------------------------------
consensus_5002#0 GGGGGGGAGCAACGACTTCCCGGGGGACCTCCTGCGCGCGGTCCTGCAGAGGCTGCCGCC 180
consensus_5002#1 ------------------------------------------------------------
consensus_5002#0 GCCCGACCTCGCGAGGGCGGCGTGCGTCTGCCGGCTGTGGCGCGGGGTCGCCTCCGACCG 240
consensus_5002#1 ------------------------------------------------------------
consensus_5002#0 CGCCGTGCTGGAGGCCGCCTTCGCGTCGCCCTGGGGGGTGCGCCGCGTCGTCGGCGAGCC 300
consensus_5002#1 ------------------------------------------------------------
consensus_5002#0 GGAGACGAGGGCCTTCTGGCGCGCCGCGTCCCTCGCCCGGTTCGCGCTCTCGCACACCGT 360
consensus_5002#1 ------------------------------------------------------------
consensus_5002#0 CCGCCGCGGGGACACCGTCCCCGGCATCGCGCTCAAGTACTCCATCCAGGTGACCGATAT 420
consensus_5002#1 ------------------------------------------------------------
consensus_5002#0 AAAACGTTTCAACAACATGATGAGCGACCATGGGATCTACTTGAGGGAGAGGCTTCTGAT 480
consensus_5002#1 ----CGTGCCGATT-CGGCACGAGCGACCATGGGATCTACTTGAGGGAGAGGCTTCTGAT 55
*** * * * * ***************************************
consensus_5002#0 ACCGATCAGCAATCCTGAAATTCTTCAGGGTAGCACATGCTACATTGAGATGGATTATAA 540
consensus_5002#1 ACCGATCAGCAATCCTGAAATTCTTCAGGGTAGCACATGCTACATTGAGATGGATTATAA 115
************************************************************
consensus_5002#0 CGCTAGAAGAGAGGTTGCAGTCTTTTATCCCCAGGGACGCCCTAGTGGAAAAGCAGAATC 600
consensus_5002#1 CGCTAGAAGAGAGGTTGCAGTCTTTTATCCCCAGGGACGCCCTAGTGGAAAAGCAGAATC 175
************************************************************
consensus_5002#0 CTCGACGAACACTGCTGCTGCAGAACGACGAAGCAGAAGGATTTTGGAGTCAGTCAAGCG 660
consensus_5002#1 CTCGACGAACACTGCTGCTGCAGAACGACGAAGCAGAAGGATTTTGGAGTCAGTCAAGCG 235
************************************************************
consensus_5002#0 AAGCTTGCATACCGATGACAGAACCGCTGCGTACTACTTATCTGTCACAGACGGTGATCC 720
consensus_5002#1 AAGCTTGCATACCGATGACAGAACCGCTGCGTACTACTTATCTGTCACAGACGGTGATCC 295
************************************************************
consensus_5002#0 AAGGGCAGCCATGATGGAGTACTCTGAGGACCTAAGGTGGGAGAGGCAACAAACAGGCCA 780
consensus_5002#1 AAGGGCAGCCATGATGGAGTACTCTGAGGACCTAAGGTGGGAGAGGCAACAAACAGGCCA 355
************************************************************
consensus_5002#0 CTAGATGTAAGGTCAATGGGAAGATAAGGGCATGGCATTTGCCGCTGCGTACTACTTATC 840
consensus_5002#1 CTAGATGTAAGGTCAATGGGAAGATAAGGGCATGGCATTTGCCGCTGCGTACTACTTATC 415
************************************************************
consensus_5002#0 TGTCACAGACGGTGATCCAAGGGCAGCCATGATGGAGTACTCTGAGGACCTAAGGTGGGA 900
consensus_5002#1 TGTCACAGACGGTGATCCAAGGGCAGCCATGATGGAGTACTCTGAGGACCTAAGGTGGGA 475
************************************************************
consensus_5002#0 GCGGCAACAAACAGGCCACTAGATGTAATCATGTAAGGTCAATGGGAAGATAAGGGCATG 960
consensus_5002#1 GCGGCAACAAACAGGCCACTAGATGTAATCATGTAAGGTCAATGGGAAGATAANGGCATG 535
***************************************************** ******
consensus_5002#0 GCATAATGATGCAGGTTATTGGAAGATCACTACTACCTGTTTGGCCGCTTGAACAATATA 1020
consensus_5002#1 GCATAATGATGCAGGTTATTGGAAGATCACTACTACCTGTTTGGCCGCTTGAACAATATA 595
************************************************************
consensus_5002#0 TATGTGGTTTACCCTCTGTACATGTAATAATGTGAATTTGTGAACATATGTAATGTATCA 1080
consensus_5002#1 TATGTGGGTTACCCTCTGTACATGTAATAATGNGAATTTGNGAACATATGTAATGGATCA 655
******* ************************ ******* ************** ****
consensus_5002#0 TCTTTTTTTTTCTCGGTGTGATGAACTTGATGAAATCCATAGCAATTGCTTTCTTTACAT 1140
consensus_5002#1 TCTTT------------------------------------------------------- 660
*****
consensus_5002#0 AT 1142
consensus_5002#1 --
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||