Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 5003 cluster # 5003       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5003#0 length = 2815 sequences # 1  
consensus_5003#1 length = 1320 sequences # 2  

consensusID : consensus_5003#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 2815
fasta sequence
                              [TGGCAATGCCGAGCATCCGAGCTCCGGCTTCCAAGCAGACGGCCACGCTACAGGTGGCTGTGAAGTGCAGGCCACTGACAGACAGCGAGCAGCGGCGTTCGCGGCATATCATACAAGTCATTGATGATAAGAATGTCGTTGTGCTGGACCCTGATCTGTCCAAGGACTACCTTGAACTCATCCAAAACAGGACCAAGGAGAGAAGATACAGCTTCGATCATGTGTATGCGCCCGGGTGCTCCAATGCGGATGTATATAAGAATATATCTTCTACAATTGCTGGTGTAGTTCAAGGCCTTAATGCGACAGTCTTTGCTTATGGTTCTACTGGAAGTGGGAAAACTTATACAATGGTTGGAACCCATAGTGATCCTGGTCTTATGGTTCTGAGCTTTCGCACAATCTTTGATCTGGTAAAGAAGGATGACAGTAAAGATACGTTTGAGGTCTCATGTTCATATCTTGAAGTGTACAATGAGGTTATCTATGATTTGCTTGAAAAATCGTCAGGTCACCTGGAGCTTCGTGAAGATCCTGTGCATGGTATAATGGTTGCTGGTTTAAGAAGCATTAAGGTTCACTCAGCAGATAAGATTCTTGAACTCTTGAACATAGGCAACAGTCGGCGCAAGACAGAGAGCACAGAAGCAAACTCAACTTCTTCACGGTCACATGCTGTCCTGGAGATAACTGTGAAGCGAAAACAAAAAGGACAATATGGTAGTCAGGTTCTTCGTGGAAAGCTTGCGTTGGTTGACCTTGCGGGCAGTGAGAGGGCCTCTGAAACAAACAACTTTGGGCAAAAGCTTAGAGATGGAGCCAACATTAACCGTTCACTTCTAGCGCTAGCGAACTGCATCAATGCCCTTGGCAAGCAAAACAAGAAAGGTCTTGCATATGTTCCATATCGAAACAGCAAATTAACACGAATCCTGAAGGATGGGCTCTCTGGTAACTCTCGTACTGTTATGGTTGCTACGATATCACCAGCTGATGATCAGTATCATCACACCACCAATACACTCAAGTATGCTGATCGTGCAAAGGAGATAAAAACACATGTCCATAAAAACATTGGACATCTTGACACCCATGTTGAAGACTACAAAAGGATGATTGACAATCTCCAGGTTGAGGTTTCTCAGTTGAAGAAGGAATTAGCTGAGAAGGAGCATCAGTTAAGTGTAAAACCTACTGAAAAAGCTGCAGACAATGAGCTATCTTGGCTAAATATCTTGAGCCAGGAAACTGGCGAGAATGTTCAAGAACGCATTAATCTGCAGAAAGCACTGTTTGAACTTGAAGAAACCAATAAGCGCAATCGAATGGAGCTCCAGCATCTTGATGATGCAATTGCAAGACAACAGGTGAAAGATAAGGATTCGGCTGTTCTGCAAGCATTAACATCACGGAGACAAGTTATTCTTGACAACATACGCGACAATGATGAAGCTGGTGCTGGCTACAGAAAGGATATTGAACTGAATGAGAGTCGCAAACGTCAACTCCAAGATATGATCGAGGAAGCCACCAGTAACAATGGCAACAGAACCTACCTCCACATTCTCAGTCAGTACAGACTTCTTGGGATGACTAATGCCGAGCTTCAAATTGAGATGGCTATGAGGGATCAAGTAATATATAACCAGAGGGAATCTCTAAGGAGTCTGTGGAACATTATTTATGGAACAGGGCTAAACCAGAAACAGATTTCTAAACTAGCTGCGAAGCAAGGCTTAACTATAGAAGGCTGTCCTTTGCCTGTGTCAAGTCCTGATGTTACTACCCCACCTTCCTTTTCACCCCATGGAAGGCTATCACCATTCATGTCATTTCCTAGCCCGCAATCACAGCCTTATTCCCCGTCTGCTTGCTTTGTCCAACATGGTTTCAGCACCATGTCTTATCTCAGAAATCAACATGAGACGCCTACAGTATGTAGGCAGGAGCACCTCAGTTCTTACTACATGATGTCTGAGTGCTCGCCTTTTGATGGTGATGGAAAACAGAAGACAAATGGAAGGTCAATGCCATACTTTTCTACCCCGGGAAAACCAAAAGAAATGTATAACTTTTCTCCTGGAACTGAAAGCGAGAGAACTCCCTGCAGTAAGGAATACCCCACCTCATATTCTCGCAATGGAGATTCGCTTGTACAAATAAAGGTAAACAGTCTTCCCTTATACACAAAAACAATGATTGGAAATCTGTAATGCACGTGGTCCCAAGTAGACATGGTTTTTCATGTAGTAAGAGAACCTAAAATGAAAAAGGAAGTAACATCAACTTAAATAAGCATAGCATTCCAAATGTGTTACTAGCGCACCAATTAAGGTAAAAAGAACAATGTTATCTCAAACAACAGAATATTTCAGAAGTGAAATTGCAACTTGTCTTAATCTGCAGGATTCCTGGTATACAGAAGAAAGGCAGTGAGGAAGGAAGGACATCATCAGCACTCTTCCATTGCACATTATCAGGCCGGACGTTTGCCACTGGAGCCCGTTCCTACATCTTCTGCCAACAGGCCCAACACCAATGTTACCCTGAGTTCATGAAAATGCTTCAGTTTAGATGTTAGGATATCAGCCAAAGCTGCGGCCATGAGGCCACGGCCATTTTGATCTTGATGCCTCTATGATGAACCCCAAGATGGCTCACTCCACCCTGTACAGTAGCTGTTAGTCTCCAGTCTTTCTTGAGTTTCTTCTCCTTTGTACAGTAGCTTTTCTGTAGGATGAATCCGATTTTTCAGAATGCTGTAAGCATGTAAATCTGCTGTGATTGTAACCCCTTTGCACCCATCAAATCAACA]

[+] EMBL AK103310             [TGGCAATGCCGAGCATCCGAGCTCCGGCTTCCAAGCAGACGGCCACGCTACAGGTGGCTGTGAAGTGCAGGCCACTGACAGACAGCGAGCAGCGGCGTTCGCGGCATATCATACAAGTCATTGATGATAAGAATGTCGTTGTGCTGGACCCTGATCTGTCCAAGGACTACCTTGAACTCATCCAAAACAGGACCAAGGAGAGAAGATACAGCTTCGATCATGTGTATGCGCCCGGGTGCTCCAATGCGGATGTATATAAGAATATATCTTCTACAATTGCTGGTGTAGTTCAAGGCCTTAATGCGACAGTCTTTGCTTATGGTTCTACTGGAAGTGGGAAAACTTATACAATGGTTGGAACCCATAGTGATCCTGGTCTTATGGTTCTGAGCTTTCGCACAATCTTTGATCTGGTAAAGAAGGATGACAGTAAAGATACGTTTGAGGTCTCATGTTCATATCTTGAAGTGTACAATGAGGTTATCTATGATTTGCTTGAAAAATCGTCAGGTCACCTGGAGCTTCGTGAAGATCCTGTGCATGGTATAATGGTTGCTGGTTTAAGAAGCATTAAGGTTCACTCAGCAGATAAGATTCTTGAACTCTTGAACATAGGCAACAGTCGGCGCAAGACAGAGAGCACAGAAGCAAACTCAACTTCTTCACGGTCACATGCTGTCCTGGAGATAACTGTGAAGCGAAAACAAAAAGGACAATATGGTAGTCAGGTTCTTCGTGGAAAGCTTGCGTTGGTTGACCTTGCGGGCAGTGAGAGGGCCTCTGAAACAAACAACTTTGGGCAAAAGCTTAGAGATGGAGCCAACATTAACCGTTCACTTCTAGCGCTAGCGAACTGCATCAATGCCCTTGGCAAGCAAAACAAGAAAGGTCTTGCATATGTTCCATATCGAAACAGCAAATTAACACGAATCCTGAAGGATGGGCTCTCTGGTAACTCTCGTACTGTTATGGTTGCTACGATATCACCAGCTGATGATCAGTATCATCACACCACCAATACACTCAAGTATGCTGATCGTGCAAAGGAGATAAAAACACATGTCCATAAAAACATTGGACATCTTGACACCCATGTTGAAGACTACAAAAGGATGATTGACAATCTCCAGGTTGAGGTTTCTCAGTTGAAGAAGGAATTAGCTGAGAAGGAGCATCAGTTAAGTGTAAAACCTACTGAAAAAGCTGCAGACAATGAGCTATCTTGGCTAAATATCTTGAGCCAGGAAACTGGCGAGAATGTTCAAGAACGCATTAATCTGCAGAAAGCACTGTTTGAACTTGAAGAAACCAATAAGCGCAATCGAATGGAGCTCCAGCATCTTGATGATGCAATTGCAAGACAACAGGTGAAAGATAAGGATTCGGCTGTTCTGCAAGCATTAACATCACGGAGACAAGTTATTCTTGACAACATACGCGACAATGATGAAGCTGGTGCTGGCTACAGAAAGGATATTGAACTGAATGAGAGTCGCAAACGTCAACTCCAAGATATGATCGAGGAAGCCACCAGTAACAATGGCAACAGAACCTACCTCCACATTCTCAGTCAGTACAGACTTCTTGGGATGACTAATGCCGAGCTTCAAATTGAGATGGCTATGAGGGATCAAGTAATATATAACCAGAGGGAATCTCTAAGGAGTCTGTGGAACATTATTTATGGAACAGGGCTAAACCAGAAACAGATTTCTAAACTAGCTGCGAAGCAAGGCTTAACTATAGAAGGCTGTCCTTTGCCTGTGTCAAGTCCTGATGTTACTACCCCACCTTCCTTTTCACCCCATGGAAGGCTATCACCATTCATGTCATTTCCTAGCCCGCAATCACAGCCTTATTCCCCGTCTGCTTGCTTTGTCCAACATGGTTTCAGCACCATGTCTTATCTCAGAAATCAACATGAGACGCCTACAGTATGTAGGCAGGAGCACCTCAGTTCTTACTACATGATGTCTGAGTGCTCGCCTTTTGATGGTGATGGAAAACAGAAGACAAATGGAAGGTCAATGCCATACTTTTCTACCCCGGGAAAACCAAAAGAAATGTATAACTTTTCTCCTGGAACTGAAAGCGAGAGAACTCCCTGCAGTAAGGAATACCCCACCTCATATTCTCGCAATGGAGATTCGCTTGTACAAATAAAGGTAAACAGTCTTCCCTTATACACAAAAACAATGATTGGAAATCTGTAATGCACGTGGTCCCAAGTAGACATGGTTTTTCATGTAGTAAGAGAACCTAAAATGAAAAAGGAAGTAACATCAACTTAAATAAGCATAGCATTCCAAATGTGTTACTAGCGCACCAATTAAGGTAAAAAGAACAATGTTATCTCAAACAACAGAATATTTCAGAAGTGAAATTGCAACTTGTCTTAATCTGCAGGATTCCTGGTATACAGAAGAAAGGCAGTGAGGAAGGAAGGACATCATCAGCACTCTTCCATTGCACATTATCAGGCCGGACGTTTGCCACTGGAGCCCGTTCCTACATCTTCTGCCAACAGGCCCAACACCAATGTTACCCTGAGTTCATGAAAATGCTTCAGTTTAGATGTTAGGATATCAGCCAAAGCTGCGGCCATGAGGCCACGGCCATTTTGATCTTGATGCCTCTATGATGAACCCCAAGATGGCTCACTCCACCCTGTACAGTAGCTGTTAGTCTCCAGTCTTTCTTGAGTTTCTTCTCCTTTGTACAGTAGCTTTTCTGTAGGATGAATCCGATTTTTCAGAATGCTGTAAGCATGTAAATCTGCTGTGATTGTAACCCCTTTGCACCCATCAAATCAACA]


>consensus_5003#0 TGGCAATGCCGAGCATCCGAGCTCCGGCTTCCAAGCAGACGGCCACGCTACAGGTGGCTG TGAAGTGCAGGCCACTGACAGACAGCGAGCAGCGGCGTTCGCGGCATATCATACAAGTCA TTGATGATAAGAATGTCGTTGTGCTGGACCCTGATCTGTCCAAGGACTACCTTGAACTCA TCCAAAACAGGACCAAGGAGAGAAGATACAGCTTCGATCATGTGTATGCGCCCGGGTGCT CCAATGCGGATGTATATAAGAATATATCTTCTACAATTGCTGGTGTAGTTCAAGGCCTTA ATGCGACAGTCTTTGCTTATGGTTCTACTGGAAGTGGGAAAACTTATACAATGGTTGGAA CCCATAGTGATCCTGGTCTTATGGTTCTGAGCTTTCGCACAATCTTTGATCTGGTAAAGA AGGATGACAGTAAAGATACGTTTGAGGTCTCATGTTCATATCTTGAAGTGTACAATGAGG TTATCTATGATTTGCTTGAAAAATCGTCAGGTCACCTGGAGCTTCGTGAAGATCCTGTGC ATGGTATAATGGTTGCTGGTTTAAGAAGCATTAAGGTTCACTCAGCAGATAAGATTCTTG AACTCTTGAACATAGGCAACAGTCGGCGCAAGACAGAGAGCACAGAAGCAAACTCAACTT CTTCACGGTCACATGCTGTCCTGGAGATAACTGTGAAGCGAAAACAAAAAGGACAATATG GTAGTCAGGTTCTTCGTGGAAAGCTTGCGTTGGTTGACCTTGCGGGCAGTGAGAGGGCCT CTGAAACAAACAACTTTGGGCAAAAGCTTAGAGATGGAGCCAACATTAACCGTTCACTTC TAGCGCTAGCGAACTGCATCAATGCCCTTGGCAAGCAAAACAAGAAAGGTCTTGCATATG TTCCATATCGAAACAGCAAATTAACACGAATCCTGAAGGATGGGCTCTCTGGTAACTCTC GTACTGTTATGGTTGCTACGATATCACCAGCTGATGATCAGTATCATCACACCACCAATA CACTCAAGTATGCTGATCGTGCAAAGGAGATAAAAACACATGTCCATAAAAACATTGGAC ATCTTGACACCCATGTTGAAGACTACAAAAGGATGATTGACAATCTCCAGGTTGAGGTTT CTCAGTTGAAGAAGGAATTAGCTGAGAAGGAGCATCAGTTAAGTGTAAAACCTACTGAAA AAGCTGCAGACAATGAGCTATCTTGGCTAAATATCTTGAGCCAGGAAACTGGCGAGAATG TTCAAGAACGCATTAATCTGCAGAAAGCACTGTTTGAACTTGAAGAAACCAATAAGCGCA ATCGAATGGAGCTCCAGCATCTTGATGATGCAATTGCAAGACAACAGGTGAAAGATAAGG ATTCGGCTGTTCTGCAAGCATTAACATCACGGAGACAAGTTATTCTTGACAACATACGCG ACAATGATGAAGCTGGTGCTGGCTACAGAAAGGATATTGAACTGAATGAGAGTCGCAAAC GTCAACTCCAAGATATGATCGAGGAAGCCACCAGTAACAATGGCAACAGAACCTACCTCC ACATTCTCAGTCAGTACAGACTTCTTGGGATGACTAATGCCGAGCTTCAAATTGAGATGG CTATGAGGGATCAAGTAATATATAACCAGAGGGAATCTCTAAGGAGTCTGTGGAACATTA TTTATGGAACAGGGCTAAACCAGAAACAGATTTCTAAACTAGCTGCGAAGCAAGGCTTAA CTATAGAAGGCTGTCCTTTGCCTGTGTCAAGTCCTGATGTTACTACCCCACCTTCCTTTT CACCCCATGGAAGGCTATCACCATTCATGTCATTTCCTAGCCCGCAATCACAGCCTTATT CCCCGTCTGCTTGCTTTGTCCAACATGGTTTCAGCACCATGTCTTATCTCAGAAATCAAC ATGAGACGCCTACAGTATGTAGGCAGGAGCACCTCAGTTCTTACTACATGATGTCTGAGT GCTCGCCTTTTGATGGTGATGGAAAACAGAAGACAAATGGAAGGTCAATGCCATACTTTT CTACCCCGGGAAAACCAAAAGAAATGTATAACTTTTCTCCTGGAACTGAAAGCGAGAGAA CTCCCTGCAGTAAGGAATACCCCACCTCATATTCTCGCAATGGAGATTCGCTTGTACAAA TAAAGGTAAACAGTCTTCCCTTATACACAAAAACAATGATTGGAAATCTGTAATGCACGT GGTCCCAAGTAGACATGGTTTTTCATGTAGTAAGAGAACCTAAAATGAAAAAGGAAGTAA CATCAACTTAAATAAGCATAGCATTCCAAATGTGTTACTAGCGCACCAATTAAGGTAAAA AGAACAATGTTATCTCAAACAACAGAATATTTCAGAAGTGAAATTGCAACTTGTCTTAAT CTGCAGGATTCCTGGTATACAGAAGAAAGGCAGTGAGGAAGGAAGGACATCATCAGCACT CTTCCATTGCACATTATCAGGCCGGACGTTTGCCACTGGAGCCCGTTCCTACATCTTCTG CCAACAGGCCCAACACCAATGTTACCCTGAGTTCATGAAAATGCTTCAGTTTAGATGTTA GGATATCAGCCAAAGCTGCGGCCATGAGGCCACGGCCATTTTGATCTTGATGCCTCTATG ATGAACCCCAAGATGGCTCACTCCACCCTGTACAGTAGCTGTTAGTCTCCAGTCTTTCTT GAGTTTCTTCTCCTTTGTACAGTAGCTTTTCTGTAGGATGAATCCGATTTTTCAGAATGC TGTAAGCATGTAAATCTGCTGTGATTGTAACCCCTTTGCACCCATCAAATCAACA



consensusID : consensus_5003#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1320
fasta sequence
                              [TGAACTTGAAGAAACCAATAAGCGCAATCGAATGGAGCTCCAGCATCTTGATGATGCAATTGCAAGACAACAGGTGAAAGATAAGGATTCGGCTGTTCTGCAAGCATTAACATCACGGAGACAAGTTATTCTTGACAACATACGCGACAATGATGAAGCTGGTGCTGGCTACAGAAAGGATATTGAACTGAATGAGAGTCGCAAACGTCAACTCCAAGATATGATCGAGGAAGCCACCAGTAACAATGGCAACAGAACCTACCTCCACATTCTCAGTCAGTACAGACTTCTTGGGATGACTAATGCCGAGCTTCAAATTGAGATGGCTATGAGGGATCAAGTAATATATAACCAGAGGGAATCTCTAAGGAGTCTGTGGAACATTATTTATGGAACAGGGCTAAACCAGAAACAGATTTCTAAACTAGCTGCGAAGCAAGGCTTAACTATAGAAGGCTGTCCTTTGCCTGTGTCAAGTCCTGATGTTACTACCCCACCTTCCTTTTCACCCCATGGAAGGCTATCACCATTCATGTCATTTCCTAGCCCGCAATCACAGCCTTATTCCCCGTCTGCTTGCTTTGTCCAACATGGTTTCAGCACCATGTCTTATCTCAGAAATCAACATGAGACGCCTACAGTATGTAGGCAGGAGCACCTCAGTTCTTACTACATGATGTCTGAGTGCTCGCCTTTTGATGGTGATGGAAAACAGAAGACAAATGGAAGGTCAATGCCATACTTTTCTACCCCGGGAAAACCAAAAGAAATGTATAACTTTTCTCCTGGAACTGAAAGCGAGAGAACTCCCTGCAGTAAGGAATACCCCACCTCATATTCTCGCAATGGAGATTCGCTTGTACAAATAAAGGATTCCTGGTATACAGAAGAAAGGCAGTGAGGAAGGAAGGACATCATCAGCACTCTTCCATTGCACATTATCAGGCCGGACGTTTGCCACTGGAGCCCGTTCCTACATCTTCTGCCAACAGGCCCAACACCAATGTTACCCTGAGTTCATGAAAATGCTTCAGTTTAGATGTTAGGATATCAGCCAAAGCTGCGGCCATGAGGCCACGGCCATTTTGATCTTGATGCCTCTATGATGAACCCCAAGATGGCTCACTCCACCCTGTACAGTAGCTGTTAGTCTCCAGTCTTTCTTGAGTTTCTTCTCCTTTGTACAGTAGCTTTTCTGTAGGATGAATCCGATTTTTCAGAATGCTGTAAGCATGTAAATCTGCTGTGATTGTAACCCCTTTGCACCCATCAAATCAACAGAATTATTCCAAGATCGGTCTCAAAAAAAAAAAAAAAAAA]

[+] EMBL AK059632             [TGAACTTGAAGAAACCAATAAGCGCAATCGAATGGAGCTCCAGCATCTTGATGATGCAATTGCAAGACAACAGGTGAAAGATAAGGATTCGGCTGTTCTGCAAGCATTAACATCACGGAGACAAGTTATTCTTGACAACATACGCGACAATGATGAAGCTGGTGCTGGCTACAGAAAGGATATTGAACTGAATGAGAGTCGCAAACGTCAACTCCAAGATATGATCGAGGAAGCCACCAGTAACAATGGCAACAGAACCTACCTCCACATTCTCAGTCAGTACAGACTTCTTGGGATGACTAATGCCGAGCTTCAAATTGAGATGGCTATGAGGGATCAAGTAATATATAACCAGAGGGAATCTCTAAGGAGTCTGTGGAACATTATTTATGGAACAGGGCTAAACCAGAAACAGATTTCTAAACTAGCTGCGAAGCAAGGCTTAACTATAGAAGGCTGTCCTTTGCCTGTGTCAAGTCCTGATGTTACTACCCCACCTTCCTTTTCACCCCATGGAAGGCTATCACCATTCATGTCATTTCCTAGCCCGCAATCACAGCCTTATTCCCCGTCTGCTTGCTTTGTCCAACATGGTTTCAGCACCATGTCTTATCTCAGAAATCAACATGAGACGCCTACAGTATGTAGGCAGGAGCACCTCAGTTCTTACTACATGATGTCTGAGTGCTCGCCTTTTGATGGTGATGGAAAACAGAAGACAAATGGAAGGTCAATGCCATACTTTTCTACCCCGGGAAAACCAAAAGAAATGTATAACTTTTCTCCTGGAACTGAAAGCGAGAGAACTCCCTGCAGTAAGGAATACCCCACCTCATATTCTCGCAATGGAGATTCGCTTGTACAAATAAAGGATTCCTGGTATACAGAAGAAAGGCAGTGAGGAAGGAAGGACATCATCAGCACTCTTCCATTGCACATTATCAGGCCGGACGTTTGCCACTGGAGCCCGTTCCTACATCTTCTGCCAACAGGCCCAACACCAATGTTACCCTGAGTTCATGAAAATGCTTCAGTTTAGATGTTAGGATATCAGCCAAAGCTGCGGCCATGAGGCCACGGCCATTTTGATCTTGATGCCTCTATGATGAACCCCAAGATGGCTCACTCCACCCTGTACAGTAGCTGTTAGTCTCCAGTCTTTCTTGAGTTTCTTCTCCTTTGTACAGTAGCTTTTCTGTAGGATGAATCCGATTTTTCAGAATGCTGTAAGCATGTAAATCTGCTGTGATTGTAACCCCTTTGCACCCATCAAATCAACA                                        ]
[-] EMBL CA760593             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   TGAGACGCCTACAGTATGTAGGCAGGAGCACCTCAGTTCTTACTACATGATGTCTGAGTGCTCGCCTTTTGATGGTGATGGAAACCAGAAGNCAAATGGAAGGTCAATGCCATACTTTTCTACCCCGGGAAAACCAAAAGAAATGTATAACTTTTCTCCTGGAACTGAAAGCGAGAGAACTCCCTGCAGTAAGGAATACCCCACCTCATATTCTCGCAATGGAGATTCGCGTGTACAAATAAAGGATTCCTGGTATACAGAAGAAAGGCAGTGAGGAAGAAAGGACATCATCAGCACTCTTCCATTGCACATTATCAGGCCGGACGTTTGCCACTGGAGCCCGTTCCTACATTTTTTGCCAACAGGCCCAACACCAATGTTACCCTGAGTTCATGAAAATGCTTCAGTTTAGATGTTAGGATATCAGCCAAAGCTGCGGCCATGAGGCCACGGCCATTTTGATCTTGATGCCTCTATGATGAACCCCAAGATGGCTCACTCCACCCTGTACAGTAGCTGTTAGTCTCCAGTCTTTCTTGAGCTTTTTTTCCTTTGTACAGTAGCTTTTCTGTAGGATGAATCCGATTTTTCAGATTGCTGTAAGCATGTAAATTTGCTGTGATTGTAACCCCTTTGCACCCATCAAATCAACAGAATTATTCCAAGATCGGTCTCAAAAAAAAAAAAAAAAAA]


>consensus_5003#1 TGAACTTGAAGAAACCAATAAGCGCAATCGAATGGAGCTCCAGCATCTTGATGATGCAAT TGCAAGACAACAGGTGAAAGATAAGGATTCGGCTGTTCTGCAAGCATTAACATCACGGAG ACAAGTTATTCTTGACAACATACGCGACAATGATGAAGCTGGTGCTGGCTACAGAAAGGA TATTGAACTGAATGAGAGTCGCAAACGTCAACTCCAAGATATGATCGAGGAAGCCACCAG TAACAATGGCAACAGAACCTACCTCCACATTCTCAGTCAGTACAGACTTCTTGGGATGAC TAATGCCGAGCTTCAAATTGAGATGGCTATGAGGGATCAAGTAATATATAACCAGAGGGA ATCTCTAAGGAGTCTGTGGAACATTATTTATGGAACAGGGCTAAACCAGAAACAGATTTC TAAACTAGCTGCGAAGCAAGGCTTAACTATAGAAGGCTGTCCTTTGCCTGTGTCAAGTCC TGATGTTACTACCCCACCTTCCTTTTCACCCCATGGAAGGCTATCACCATTCATGTCATT TCCTAGCCCGCAATCACAGCCTTATTCCCCGTCTGCTTGCTTTGTCCAACATGGTTTCAG CACCATGTCTTATCTCAGAAATCAACATGAGACGCCTACAGTATGTAGGCAGGAGCACCT CAGTTCTTACTACATGATGTCTGAGTGCTCGCCTTTTGATGGTGATGGAAAACAGAAGAC AAATGGAAGGTCAATGCCATACTTTTCTACCCCGGGAAAACCAAAAGAAATGTATAACTT TTCTCCTGGAACTGAAAGCGAGAGAACTCCCTGCAGTAAGGAATACCCCACCTCATATTC TCGCAATGGAGATTCGCTTGTACAAATAAAGGATTCCTGGTATACAGAAGAAAGGCAGTG AGGAAGGAAGGACATCATCAGCACTCTTCCATTGCACATTATCAGGCCGGACGTTTGCCA CTGGAGCCCGTTCCTACATCTTCTGCCAACAGGCCCAACACCAATGTTACCCTGAGTTCA TGAAAATGCTTCAGTTTAGATGTTAGGATATCAGCCAAAGCTGCGGCCATGAGGCCACGG CCATTTTGATCTTGATGCCTCTATGATGAACCCCAAGATGGCTCACTCCACCCTGTACAG TAGCTGTTAGTCTCCAGTCTTTCTTGAGTTTCTTCTCCTTTGTACAGTAGCTTTTCTGTA GGATGAATCCGATTTTTCAGAATGCTGTAAGCATGTAAATCTGCTGTGATTGTAACCCCT TTGCACCCATCAAATCAACAGAATTATTCCAAGATCGGTCTCAAAAAAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5003#0      TGGCAATGCCGAGCATCCGAGCTCCGGCTTCCAAGCAGACGGCCACGCTACAGGTGGCTG 60
consensus_5003#1      ------------------------------------------------------------
                                                                                  

consensus_5003#0      TGAAGTGCAGGCCACTGACAGACAGCGAGCAGCGGCGTTCGCGGCATATCATACAAGTCA 120
consensus_5003#1      ------------------------------------------------------------
                                                                                  

consensus_5003#0      TTGATGATAAGAATGTCGTTGTGCTGGACCCTGATCTGTCCAAGGACTACCTTGAACTCA 180
consensus_5003#1      ------------------------------------------------------------
                                                                                  

consensus_5003#0      TCCAAAACAGGACCAAGGAGAGAAGATACAGCTTCGATCATGTGTATGCGCCCGGGTGCT 240
consensus_5003#1      ------------------------------------------------------------
                                                                                  

consensus_5003#0      CCAATGCGGATGTATATAAGAATATATCTTCTACAATTGCTGGTGTAGTTCAAGGCCTTA 300
consensus_5003#1      ------------------------------------------------------------
                                                                                  

consensus_5003#0      ATGCGACAGTCTTTGCTTATGGTTCTACTGGAAGTGGGAAAACTTATACAATGGTTGGAA 360
consensus_5003#1      ------------------------------------------------------------
                                                                                  

consensus_5003#0      CCCATAGTGATCCTGGTCTTATGGTTCTGAGCTTTCGCACAATCTTTGATCTGGTAAAGA 420
consensus_5003#1      ------------------------------------------------------------
                                                                                  

consensus_5003#0      AGGATGACAGTAAAGATACGTTTGAGGTCTCATGTTCATATCTTGAAGTGTACAATGAGG 480
consensus_5003#1      ------------------------------------------------------------
                                                                                  

consensus_5003#0      TTATCTATGATTTGCTTGAAAAATCGTCAGGTCACCTGGAGCTTCGTGAAGATCCTGTGC 540
consensus_5003#1      ------------------------------------------------------------
                                                                                  

consensus_5003#0      ATGGTATAATGGTTGCTGGTTTAAGAAGCATTAAGGTTCACTCAGCAGATAAGATTCTTG 600
consensus_5003#1      ------------------------------------------------------------
                                                                                  

consensus_5003#0      AACTCTTGAACATAGGCAACAGTCGGCGCAAGACAGAGAGCACAGAAGCAAACTCAACTT 660
consensus_5003#1      ------------------------------------------------------------
                                                                                  

consensus_5003#0      CTTCACGGTCACATGCTGTCCTGGAGATAACTGTGAAGCGAAAACAAAAAGGACAATATG 720
consensus_5003#1      ------------------------------------------------------------
                                                                                  

consensus_5003#0      GTAGTCAGGTTCTTCGTGGAAAGCTTGCGTTGGTTGACCTTGCGGGCAGTGAGAGGGCCT 780
consensus_5003#1      ------------------------------------------------------------
                                                                                  

consensus_5003#0      CTGAAACAAACAACTTTGGGCAAAAGCTTAGAGATGGAGCCAACATTAACCGTTCACTTC 840
consensus_5003#1      ------------------------------------------------------------
                                                                                  

consensus_5003#0      TAGCGCTAGCGAACTGCATCAATGCCCTTGGCAAGCAAAACAAGAAAGGTCTTGCATATG 900
consensus_5003#1      ------------------------------------------------------------
                                                                                  

consensus_5003#0      TTCCATATCGAAACAGCAAATTAACACGAATCCTGAAGGATGGGCTCTCTGGTAACTCTC 960
consensus_5003#1      ------------------------------------------------------------
                                                                                  

consensus_5003#0      GTACTGTTATGGTTGCTACGATATCACCAGCTGATGATCAGTATCATCACACCACCAATA 1020
consensus_5003#1      ------------------------------------------------------------
                                                                                  

consensus_5003#0      CACTCAAGTATGCTGATCGTGCAAAGGAGATAAAAACACATGTCCATAAAAACATTGGAC 1080
consensus_5003#1      ------------------------------------------------------------
                                                                                  

consensus_5003#0      ATCTTGACACCCATGTTGAAGACTACAAAAGGATGATTGACAATCTCCAGGTTGAGGTTT 1140
consensus_5003#1      ------------------------------------------------------------
                                                                                  

consensus_5003#0      CTCAGTTGAAGAAGGAATTAGCTGAGAAGGAGCATCAGTTAAGTGTAAAACCTACTGAAA 1200
consensus_5003#1      ------------------------------------------------------------
                                                                                  

consensus_5003#0      AAGCTGCAGACAATGAGCTATCTTGGCTAAATATCTTGAGCCAGGAAACTGGCGAGAATG 1260
consensus_5003#1      ------------------------------------------------------------
                                                                                  

consensus_5003#0      TTCAAGAACGCATTAATCTGCAGAAAGCACTGTTTGAACTTGAAGAAACCAATAAGCGCA 1320
consensus_5003#1      ----------------------------------TGAACTTGAAGAAACCAATAAGCGCA 26
                                                        **************************

consensus_5003#0      ATCGAATGGAGCTCCAGCATCTTGATGATGCAATTGCAAGACAACAGGTGAAAGATAAGG 1380
consensus_5003#1      ATCGAATGGAGCTCCAGCATCTTGATGATGCAATTGCAAGACAACAGGTGAAAGATAAGG 86
                      ************************************************************

consensus_5003#0      ATTCGGCTGTTCTGCAAGCATTAACATCACGGAGACAAGTTATTCTTGACAACATACGCG 1440
consensus_5003#1      ATTCGGCTGTTCTGCAAGCATTAACATCACGGAGACAAGTTATTCTTGACAACATACGCG 146
                      ************************************************************

consensus_5003#0      ACAATGATGAAGCTGGTGCTGGCTACAGAAAGGATATTGAACTGAATGAGAGTCGCAAAC 1500
consensus_5003#1      ACAATGATGAAGCTGGTGCTGGCTACAGAAAGGATATTGAACTGAATGAGAGTCGCAAAC 206
                      ************************************************************

consensus_5003#0      GTCAACTCCAAGATATGATCGAGGAAGCCACCAGTAACAATGGCAACAGAACCTACCTCC 1560
consensus_5003#1      GTCAACTCCAAGATATGATCGAGGAAGCCACCAGTAACAATGGCAACAGAACCTACCTCC 266
                      ************************************************************

consensus_5003#0      ACATTCTCAGTCAGTACAGACTTCTTGGGATGACTAATGCCGAGCTTCAAATTGAGATGG 1620
consensus_5003#1      ACATTCTCAGTCAGTACAGACTTCTTGGGATGACTAATGCCGAGCTTCAAATTGAGATGG 326
                      ************************************************************

consensus_5003#0      CTATGAGGGATCAAGTAATATATAACCAGAGGGAATCTCTAAGGAGTCTGTGGAACATTA 1680
consensus_5003#1      CTATGAGGGATCAAGTAATATATAACCAGAGGGAATCTCTAAGGAGTCTGTGGAACATTA 386
                      ************************************************************

consensus_5003#0      TTTATGGAACAGGGCTAAACCAGAAACAGATTTCTAAACTAGCTGCGAAGCAAGGCTTAA 1740
consensus_5003#1      TTTATGGAACAGGGCTAAACCAGAAACAGATTTCTAAACTAGCTGCGAAGCAAGGCTTAA 446
                      ************************************************************

consensus_5003#0      CTATAGAAGGCTGTCCTTTGCCTGTGTCAAGTCCTGATGTTACTACCCCACCTTCCTTTT 1800
consensus_5003#1      CTATAGAAGGCTGTCCTTTGCCTGTGTCAAGTCCTGATGTTACTACCCCACCTTCCTTTT 506
                      ************************************************************

consensus_5003#0      CACCCCATGGAAGGCTATCACCATTCATGTCATTTCCTAGCCCGCAATCACAGCCTTATT 1860
consensus_5003#1      CACCCCATGGAAGGCTATCACCATTCATGTCATTTCCTAGCCCGCAATCACAGCCTTATT 566
                      ************************************************************

consensus_5003#0      CCCCGTCTGCTTGCTTTGTCCAACATGGTTTCAGCACCATGTCTTATCTCAGAAATCAAC 1920
consensus_5003#1      CCCCGTCTGCTTGCTTTGTCCAACATGGTTTCAGCACCATGTCTTATCTCAGAAATCAAC 626
                      ************************************************************

consensus_5003#0      ATGAGACGCCTACAGTATGTAGGCAGGAGCACCTCAGTTCTTACTACATGATGTCTGAGT 1980
consensus_5003#1      ATGAGACGCCTACAGTATGTAGGCAGGAGCACCTCAGTTCTTACTACATGATGTCTGAGT 686
                      ************************************************************

consensus_5003#0      GCTCGCCTTTTGATGGTGATGGAAAACAGAAGACAAATGGAAGGTCAATGCCATACTTTT 2040
consensus_5003#1      GCTCGCCTTTTGATGGTGATGGAAAACAGAAGACAAATGGAAGGTCAATGCCATACTTTT 746
                      ************************************************************

consensus_5003#0      CTACCCCGGGAAAACCAAAAGAAATGTATAACTTTTCTCCTGGAACTGAAAGCGAGAGAA 2100
consensus_5003#1      CTACCCCGGGAAAACCAAAAGAAATGTATAACTTTTCTCCTGGAACTGAAAGCGAGAGAA 806
                      ************************************************************

consensus_5003#0      CTCCCTGCAGTAAGGAATACCCCACCTCATATTCTCGCAATGGAGATTCGCTTGTACAAA 2160
consensus_5003#1      CTCCCTGCAGTAAGGAATACCCCACCTCATATTCTCGCAATGGAGATTCGCTTGTACAAA 866
                      ************************************************************

consensus_5003#0      TAAAGGTAAACAGTCTTCCCTTATACACAAAAACAATGATTGGAAATCTGTAATGCACGT 2220
consensus_5003#1      TAAAGG------------------------------------------------------ 872
                      ******                                                      

consensus_5003#0      GGTCCCAAGTAGACATGGTTTTTCATGTAGTAAGAGAACCTAAAATGAAAAAGGAAGTAA 2280
consensus_5003#1      ------------------------------------------------------------
                                                                                  

consensus_5003#0      CATCAACTTAAATAAGCATAGCATTCCAAATGTGTTACTAGCGCACCAATTAAGGTAAAA 2340
consensus_5003#1      ------------------------------------------------------------
                                                                                  

consensus_5003#0      AGAACAATGTTATCTCAAACAACAGAATATTTCAGAAGTGAAATTGCAACTTGTCTTAAT 2400
consensus_5003#1      ------------------------------------------------------------
                                                                                  

consensus_5003#0      CTGCAGGATTCCTGGTATACAGAAGAAAGGCAGTGAGGAAGGAAGGACATCATCAGCACT 2460
consensus_5003#1      -------ATTCCTGGTATACAGAAGAAAGGCAGTGAGGAAGGAAGGACATCATCAGCACT 925
                             *****************************************************

consensus_5003#0      CTTCCATTGCACATTATCAGGCCGGACGTTTGCCACTGGAGCCCGTTCCTACATCTTCTG 2520
consensus_5003#1      CTTCCATTGCACATTATCAGGCCGGACGTTTGCCACTGGAGCCCGTTCCTACATCTTCTG 985
                      ************************************************************

consensus_5003#0      CCAACAGGCCCAACACCAATGTTACCCTGAGTTCATGAAAATGCTTCAGTTTAGATGTTA 2580
consensus_5003#1      CCAACAGGCCCAACACCAATGTTACCCTGAGTTCATGAAAATGCTTCAGTTTAGATGTTA 1045
                      ************************************************************

consensus_5003#0      GGATATCAGCCAAAGCTGCGGCCATGAGGCCACGGCCATTTTGATCTTGATGCCTCTATG 2640
consensus_5003#1      GGATATCAGCCAAAGCTGCGGCCATGAGGCCACGGCCATTTTGATCTTGATGCCTCTATG 1105
                      ************************************************************

consensus_5003#0      ATGAACCCCAAGATGGCTCACTCCACCCTGTACAGTAGCTGTTAGTCTCCAGTCTTTCTT 2700
consensus_5003#1      ATGAACCCCAAGATGGCTCACTCCACCCTGTACAGTAGCTGTTAGTCTCCAGTCTTTCTT 1165
                      ************************************************************

consensus_5003#0      GAGTTTCTTCTCCTTTGTACAGTAGCTTTTCTGTAGGATGAATCCGATTTTTCAGAATGC 2760
consensus_5003#1      GAGTTTCTTCTCCTTTGTACAGTAGCTTTTCTGTAGGATGAATCCGATTTTTCAGAATGC 1225
                      ************************************************************

consensus_5003#0      TGTAAGCATGTAAATCTGCTGTGATTGTAACCCCTTTGCACCCATCAAATCAACA----- 2815
consensus_5003#1      TGTAAGCATGTAAATCTGCTGTGATTGTAACCCCTTTGCACCCATCAAATCAACAGAATT 1285
                      *******************************************************     

consensus_5003#0      -----------------------------------
consensus_5003#1      ATTCCAAGATCGGTCTCAAAAAAAAAAAAAAAAAA 1320
                                                         




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)