cluster # 5006

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Oryza sativa
cluster # 5006 cluster # 5006 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5006#0 length = 624 sequences # 1

consensus_5006#1 length = 605 sequences # 2

consensusID : consensus_5006#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 624
fasta sequence

                              [TTTTTTTTTTTTTACAGAAGGCATCAAAAGCTGGCAGCATAACCAAGTACTAATACATGAACTCGATACAGTAACGAACCATGGAAGGAAACACATCAAAATATAAGCAGTGTGTAAGAAGAGATTAGTAGACGGCTATGCAGTACTTCTACTTGGATTTTCAACGGAGCTTCATCCATAGGTTAATGGAGAAGCAGGTCACCCGGATGAGTTCATCGGTGTCAGTGGAGAAAACGTTGCAGGAGTTGTTGTTGGGCACGTGCAGACAAAAAACCCCTCTTACAAGGGGCTGTTTCTTTGGGGCTTGGACTTCATGTTATGCTGGCCAAGCCCGAGAGGAGAGCAGAATGTACAAAAGATTGGGAATCTGGGATCGTTGCAGCAAGACATTCTTCCATGATCTTGAGTTGCCTTTGCCCAACATCGACAGCCTTGGTTCCGTTCTCCATTGATTTCTCCTCGGAGCCGGAGAGGCGGGCGTCACGCGCTCAGATCTCGAAAGTGAGGGGGCGCAGCAGCGGCAGCATTCGATCGGGGACAGCGACGCCNCCTCCGCATCCGCCCCGACGCGAGCCAAGGGCAAGGCGAGATGAACACGAAACCCCCCCCCTTGTCTCGTCCTCT]

[+] EMBL CA760584             [TTTTTTTTTTTTTACAGAAGGCATCAAAAGCTGGCAGCATAACCAAGTACTAATACATGAACTCGATACAGTAACGAACCATGGAAGGAAACACATCAAAATATAAGCAGTGTGTAAGAAGAGATTAGTAGACGGCTATGCAGTACTTCTACTTGGATTTTCAACGGAGCTTCATCCATAGGTTAATGGAGAAGCAGGTCACCCGGATGAGTTCATCGGTGTCAGTGGAGAAAACGTTGCAGGAGTTGTTGTTGGGCACGTGCAGACAAAAAACCCCTCTTACAAGGGGCTGTTTCTTTGGGGCTTGGACTTCATGTTATGCTGGCCAAGCCCGAGAGGAGAGCAGAATGTACAAAAGATTGGGAATCTGGGATCGTTGCAGCAAGACATTCTTCCATGATCTTGAGTTGCCTTTGCCCAACATCGACAGCCTTGGTTCCGTTCTCCATTGATTTCTCCTCGGAGCCGGAGAGGCGGGCGTCACGCGCTCAGATCTCGAAAGTGAGGGGGCGCAGCAGCGGCAGCATTCGATCGGGGACAGCGACGCCNCCTCCGCATCCGCCCCGACGCGAGCCAAGGGCAAGGCGAGATGAACACGAAACCCCCCCCCTTGTCTCGTCCTCT]




>consensus_5006#0
TTTTTTTTTTTTTACAGAAGGCATCAAAAGCTGGCAGCATAACCAAGTACTAATACATGA
ACTCGATACAGTAACGAACCATGGAAGGAAACACATCAAAATATAAGCAGTGTGTAAGAA
GAGATTAGTAGACGGCTATGCAGTACTTCTACTTGGATTTTCAACGGAGCTTCATCCATA
GGTTAATGGAGAAGCAGGTCACCCGGATGAGTTCATCGGTGTCAGTGGAGAAAACGTTGC
AGGAGTTGTTGTTGGGCACGTGCAGACAAAAAACCCCTCTTACAAGGGGCTGTTTCTTTG
GGGCTTGGACTTCATGTTATGCTGGCCAAGCCCGAGAGGAGAGCAGAATGTACAAAAGAT
TGGGAATCTGGGATCGTTGCAGCAAGACATTCTTCCATGATCTTGAGTTGCCTTTGCCCA
ACATCGACAGCCTTGGTTCCGTTCTCCATTGATTTCTCCTCGGAGCCGGAGAGGCGGGCG
TCACGCGCTCAGATCTCGAAAGTGAGGGGGCGCAGCAGCGGCAGCATTCGATCGGGGACA
GCGACGCCNCCTCCGCATCCGCCCCGACGCGAGCCAAGGGCAAGGCGAGATGAACACGAA
ACCCCCCCCCTTGTCTCGTCCTCT

consensusID : consensus_5006#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 605
fasta sequence

                              [AATATTGGCACCGAGACCGTACAGAAGGCATCAAAAGCTGGCAGCATAACCAAGTACTAATACATGAACTCGATACAGTAACGAACCATGGAAGGAAACACATCAAAATATAAGCAGTGTGTAAGAAGAGATTAGTAGACGGCTATGCAGTACTTCTACTTGGATTTTC-AACGGAGCTTCATCCATAGGTTAATGG-AGAA-GCAGGTCACCCGGATGAGTTC-ATCGG-TGTCAGTGGAGAAAACGGTTGCAGGAGTTGTTGTTGGGCACGTGCAGACGAAGAACCCCTCTTACAAGGGGCTGTTTCTTTGGGGCTTGGACTTCATGTTATGCTGGCCAAGCCCGAGAGGAGAGCAGAATGTACAAAAGATTGGGAATCTGGGATCGTTGCAGCAAGACATTCTTCCATGATCTTGAGTTGCCTTTGCCCAACATCGACAGCCTTGGTTCCGTTCTCCATTGATTTCTCCTCGGAGCCGGAGAGGCGGGCGTCACGCGCTCAGATCTCGAAAGTGAGGGGGCGCAGCAGCGGCAGCATTCGATCGGGGACAGCGACGCCGCCTCCGCATCCGCCCCGACGCGAGCCAAGGGCAAGGCGAGATGAACAC]

[-] EMBL AK103454             [AATATTGGCACCGAGACCGTACAGAAGGCATCAAAAGCTGGCAGCATAACCAAGTACTAATACATGAACTCGATACAGTAACGAACCATGGAAGGAAACACATCAAAATATAAGCAGTGTGTAAGAAGAGATTAGTAGACGGCTATGCAGTACTTCTACTTGGATTTTC AACGGAGCTTCATCCATAGGTTAATGG AGAA GCAGGTCACCCGGATGAGTTC ATCGG TGTCAGTGGAGAAAACGGTTGCAGGAGTTGTTGTTGGGCACGTGCAGACGAAGAACCCCTCTTACAAGGGGCTGTTTCTTTGGGGCTTGGACTTCATGTTATGCTGGCCAAGCCCGAGAGGAGAGCAGAATGTACAAAAGATTGGGAATCTGGGATCGTTGCAGCAAGACATTCTTCCATGATCTTGAGTTGCCTTTGCCCAACATCGACAGCCTTGGTTCCGTTCTCCATTGATTTCTCCTCGGAGCCGGAGAGGCGGGCGTCACGCGCTCAGATCTCGAAAGTGAGGGGGCGCAGCAGCGGCAGCATTCGATCGGGGACAGCGACGCCGCCTCCGCATCCGCCCCGACGCGAGCCAAGGGCAAGGCGAGATGAACAC]
[-] EMBL OS1321744            [                                                                                                                                                                   tTTTTCAAACGGAGCTTCATCCATAGGTTAATGGAAGAANCCAGGTCACCCGGATGAGTTCAATCGGTTGTCAGTGGAGAAAACGGTTGCAGGAGTTGTTGTTGGGCACGTGCAGACGAAGAACCCCTCTTACAAGGGGCTGTTTCTTTGGGGCTTGGACTTCATGTTATGCTGGCCAAGCCCGAGAGGAGAGCAGAATGTACAAAAGATTGGGAATCTGGGATCGTTGCAGCAAGACATTCTTCCATGATCTTGAGTTGCCTTTGCCCAACATCGACAGCCTTGGTTCCGTTCTCCATTGATTTCTCCTCGGAGCCGGAGAGGCGGGCGTCACGCGCTCAGATCTCGAAAGTGAGGGGGCGCAGCAGCGGCAGCATTCGATCGGGGACAGCGACGCCGCCTCCGCATCCGCCCCGACGCGAGCCAAGGGCAAGGCGAGATGAA   ]




>consensus_5006#1
AATATTGGCACCGAGACCGTACAGAAGGCATCAAAAGCTGGCAGCATAACCAAGTACTAA
TACATGAACTCGATACAGTAACGAACCATGGAAGGAAACACATCAAAATATAAGCAGTGT
GTAAGAAGAGATTAGTAGACGGCTATGCAGTACTTCTACTTGGATTTTCAACGGAGCTTC
ATCCATAGGTTAATGGAGAAGCAGGTCACCCGGATGAGTTCATCGGTGTCAGTGGAGAAA
ACGGTTGCAGGAGTTGTTGTTGGGCACGTGCAGACGAAGAACCCCTCTTACAAGGGGCTG
TTTCTTTGGGGCTTGGACTTCATGTTATGCTGGCCAAGCCCGAGAGGAGAGCAGAATGTA
CAAAAGATTGGGAATCTGGGATCGTTGCAGCAAGACATTCTTCCATGATCTTGAGTTGCC
TTTGCCCAACATCGACAGCCTTGGTTCCGTTCTCCATTGATTTCTCCTCGGAGCCGGAGA
GGCGGGCGTCACGCGCTCAGATCTCGAAAGTGAGGGGGCGCAGCAGCGGCAGCATTCGAT
CGGGGACAGCGACGCCGCCTCCGCATCCGCCCCGACGCGAGCCAAGGGCAAGGCGAGATG
AACAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5006#0      -------TTTTTTTTTTTTTACAGAAGGCATCAAAAGCTGGCAGCATAACCAAGTACTAA 53
consensus_5006#1      AATATTGGCACCGAGACCGTACAGAAGGCATCAAAAGCTGGCAGCATAACCAAGTACTAA 60
                                         *****************************************

consensus_5006#0      TACATGAACTCGATACAGTAACGAACCATGGAAGGAAACACATCAAAATATAAGCAGTGT 113
consensus_5006#1      TACATGAACTCGATACAGTAACGAACCATGGAAGGAAACACATCAAAATATAAGCAGTGT 120
                      ************************************************************

consensus_5006#0      GTAAGAAGAGATTAGTAGACGGCTATGCAGTACTTCTACTTGGATTTTCAACGGAGCTTC 173
consensus_5006#1      GTAAGAAGAGATTAGTAGACGGCTATGCAGTACTTCTACTTGGATTTTCAACGGAGCTTC 180
                      ************************************************************

consensus_5006#0      ATCCATAGGTTAATGGAGAAGCAGGTCACCCGGATGAGTTCATCGGTGTCAGTGGAGAAA 233
consensus_5006#1      ATCCATAGGTTAATGGAGAAGCAGGTCACCCGGATGAGTTCATCGGTGTCAGTGGAGAAA 240
                      ************************************************************

consensus_5006#0      ACG-TTGCAGGAGTTGTTGTTGGGCACGTGCAGACAAAAAACCCCTCTTACAAGGGGCTG 292
consensus_5006#1      ACGGTTGCAGGAGTTGTTGTTGGGCACGTGCAGACGAAGAACCCCTCTTACAAGGGGCTG 300
                      *** ******************************* ** *********************

consensus_5006#0      TTTCTTTGGGGCTTGGACTTCATGTTATGCTGGCCAAGCCCGAGAGGAGAGCAGAATGTA 352
consensus_5006#1      TTTCTTTGGGGCTTGGACTTCATGTTATGCTGGCCAAGCCCGAGAGGAGAGCAGAATGTA 360
                      ************************************************************

consensus_5006#0      CAAAAGATTGGGAATCTGGGATCGTTGCAGCAAGACATTCTTCCATGATCTTGAGTTGCC 412
consensus_5006#1      CAAAAGATTGGGAATCTGGGATCGTTGCAGCAAGACATTCTTCCATGATCTTGAGTTGCC 420
                      ************************************************************

consensus_5006#0      TTTGCCCAACATCGACAGCCTTGGTTCCGTTCTCCATTGATTTCTCCTCGGAGCCGGAGA 472
consensus_5006#1      TTTGCCCAACATCGACAGCCTTGGTTCCGTTCTCCATTGATTTCTCCTCGGAGCCGGAGA 480
                      ************************************************************

consensus_5006#0      GGCGGGCGTCACGCGCTCAGATCTCGAAAGTGAGGGGGCGCAGCAGCGGCAGCATTCGAT 532
consensus_5006#1      GGCGGGCGTCACGCGCTCAGATCTCGAAAGTGAGGGGGCGCAGCAGCGGCAGCATTCGAT 540
                      ************************************************************

consensus_5006#0      CGGGGACAGCGACGCCNCCTCCGCATCCGCCCCGACGCGAGCCAAGGGCAAGGCGAGATG 592
consensus_5006#1      CGGGGACAGCGACGCCGCCTCCGCATCCGCCCCGACGCGAGCCAAGGGCAAGGCGAGATG 600
                      **************** *******************************************

consensus_5006#0      AACACGAAACCCCCCCCCTTGTCTCGTCCTCT 624
consensus_5006#1      AACAC--------------------------- 605
                      *****