cluster # 5012

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Oryza sativa
cluster # 5012 cluster # 5012 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5012#0 length = 727 sequences # 2

consensus_5012#1 length = 633 sequences # 1

consensusID : consensus_5012#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 727
fasta sequence

                              [CCATTCCTCTCTTCTTCCTCCCTTTCTCCTCCTCGCCACCTAACGTCGTCGACGCTCGCCGGCGGCGAGGTGTGATATCTGTGCGGTGATCATCGATGGGGCCTCAGCAAGACCGGTCGGCGGCCAAGCCGTACGCGAACGGCAGCACGGCGGCGGCGGCGGCGGCGGGGAGGAAGGAGAACAACAAGGTGGTGCGGTACAGGGAGTGCCAGCGCAACCAC-GCCGCCAGCATCGGCGGCCACGCCGTCGACGGCTGCCGCGAGTTCATGGCGTCGGGCGCCGAGGGCACCGCCGCCGCGCTCCTCTGCGCCGCCTGCGGCTGCCACCGGAGCTTCCACAGGCGAGAGGTGGAGGCCGCCGCCGCCGAATGCGACTGCTCCTCCGACACCTCCTCCGGCACCGGCCGCCGGTGATCGCCGTGGATTTGATTCGGCCTCGTCGTGCGAGTAGATCAGCATCATCAGCAGGTAAGGTGGTATTGGCGATTTGGCATTCAAAGGATTCGGTGGATGAATGAATCTGATTGTGTATGAACCGATTAAAAAGTTCTCTTCCTTTTTTTCTTTCATATTTTGATTTTTGGTGAATTGATGGTGTGTAATGTAACATAATATATGTTAAAAAGCATACGCATAAGAAGCGTTCATGTAACTGCTGTGTCCATGTACAGATTATATTCAGATGAACATCTTAATTATATTCTGTAAAATAACTGTGCTTTTCAAAA]

[+] EMBL AK063715             [CCATTCCTCTCTTCTTCCTCCCTTTCTCCTCCTCGCCACCTAACGTCGTCGACGCTCGCCGGCGGCGAGGTGTGATATCTGTGCGGTGATCATCGATGGGGCCTCAGCAAGACCGGTCGGCGGCCAAGCCGTACGCGAACGGCAGCACGGCGGCGGCGGCGGCGGCGGGGAGGAAGGAGAACAACAAGGTGGTGCGGTACAGGGAGTGCCAGCGCAACCAC GCCGCCAGCATCGGCGGCCACGCCGTCGACGGCTGCCGCGAGTTCATGGCGTCGGGCGCCGAGGGCACCGCCGCCGCGCTCCTCTGCGCCGCCTGCGGCTGCCACCGGAGCTTCCACAGGCGAGAGGTGGAGGCCGCCGCCGCCGAATGCGACTGCTCCTCCGACACCTCCTCCGGCACCGGCCGCCGGTGATCGCCGTGGATTTGATTCGGCCTCGTCGTGCGAGTAGATCAGCATCATCAGCAGGTAAGGTGGTATTGGCGATTTGGCATTCAAAGGATTCGGTGGATGAATGAATCTGATTGTGTATGAACCGATTAAAAAGTTCTCTTCCTTTTTTTCTTTCATATTTTGATTTTTGGTGAATTGATGGTGTGTAATGTAACATAATATATGTTAAAAAGCATACGCATAAGAAGCGTTCATGTAACTGCTGTGTCCATGTACAGATTATATTCAGATGAACATCTTAATTATATTCTGTAAAATAACTGTGCTT       ]
[+] EMBL BI804433             [                                                                                                                                                                                                                 CAGCGCAACCACTGCCGCCAGCATC GC GCCACGCCGTCGAC GCT CCGCGAGTTCATGGCGTCGGGC CCGAGGGCACCGCC CCGCGCTCCTCTGC CCGCCTGCGGCTGCCACCGGAGCTTCCACAGGCGAGAGGTGGA GCCGCCGCCGCCGAATGCGACTGCTCCTCCGACACCTCCTCCGGCACCGGCCGCCGGTGATCGCCGTGGATTTGATTCGGCCTCGTCGTGCGAGTAGATCAGCATCATCAGCAGGTAAGGTGGTATTGGCGATTTGGCATTC AAGGATTCGGTGGATGAATGAATCTGATTGTGTATGAACCGATTAAAAAGTTCTCTTCC TTTTTTCTTTCATATTTTGATTTTTGGTGAATTGATGGTGTGTAATGTAACATAATATATGTTAAAAAGCATACGCATAAGAAGCGTTCATGTAACTGCTGTGTCCATGTACAGATTATATTCAGATGAACATCTTAATTATATTCTGTAAAATAATTGTGCTTTTCAAAA]




>consensus_5012#0
CCATTCCTCTCTTCTTCCTCCCTTTCTCCTCCTCGCCACCTAACGTCGTCGACGCTCGCC
GGCGGCGAGGTGTGATATCTGTGCGGTGATCATCGATGGGGCCTCAGCAAGACCGGTCGG
CGGCCAAGCCGTACGCGAACGGCAGCACGGCGGCGGCGGCGGCGGCGGGGAGGAAGGAGA
ACAACAAGGTGGTGCGGTACAGGGAGTGCCAGCGCAACCACGCCGCCAGCATCGGCGGCC
ACGCCGTCGACGGCTGCCGCGAGTTCATGGCGTCGGGCGCCGAGGGCACCGCCGCCGCGC
TCCTCTGCGCCGCCTGCGGCTGCCACCGGAGCTTCCACAGGCGAGAGGTGGAGGCCGCCG
CCGCCGAATGCGACTGCTCCTCCGACACCTCCTCCGGCACCGGCCGCCGGTGATCGCCGT
GGATTTGATTCGGCCTCGTCGTGCGAGTAGATCAGCATCATCAGCAGGTAAGGTGGTATT
GGCGATTTGGCATTCAAAGGATTCGGTGGATGAATGAATCTGATTGTGTATGAACCGATT
AAAAAGTTCTCTTCCTTTTTTTCTTTCATATTTTGATTTTTGGTGAATTGATGGTGTGTA
ATGTAACATAATATATGTTAAAAAGCATACGCATAAGAAGCGTTCATGTAACTGCTGTGT
CCATGTACAGATTATATTCAGATGAACATCTTAATTATATTCTGTAAAATAACTGTGCTT
TTCAAAA

consensusID : consensus_5012#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 633
fasta sequence

                              [AAGCTTGGTGCCGAGTGAGAGAGCAGCAAAGCGAGAGTGTGCGTGCGTGGGCGTGTCGCGCCATGATGAAGAGGCTGGTGGTCCTGAGGAGGCGGGAGCCGGCGGTGAGGTTCAGCTGCTGCGGCGTCAGGTACGGCGAGTGCCGCCGCAACCACGCGGCCAGCACCGGCGGCCACGCCGTCGACGGCTGCCGCGAGTTCATCGCCGCCGAGGACGGCGGCGGCGGCAACAGCACAAGCGCCGTGGGCGTCGCCGCGGCGGCGCTCAAGTGCGCCGCCTGCGGCTGCCACCGCAGCTTCCACCGCAGGGTGCAGGTGTACGAGGTGGCCTGGGACGACGACTGCGCCTCCGGCGACACCTCCTCCTCCTCGCCGTCGTCGTCGTCCTCGTTGAGCAGCGAGTAGACCAGCTGCGGCAATGGCGGCGGCGCGCCGCCGCCGCAGCTGCCGTCTCCGGCCGGTGCATCGTCATGCTGCATGCCTAGGATATGATCAGACCTCGCGATTGTTAATTAATTAATTAATTAATTAATTATTAGCTTGTGTAATCTGTATACCCATGGATTGATTGACCCTATTCCCCCCAAGTGATTATTTGCTCTCATCTCTAATTAATCAATTAATTAATGCCTTA]

[+] EMBL AK058840             [AAGCTTGGTGCCGAGTGAGAGAGCAGCAAAGCGAGAGTGTGCGTGCGTGGGCGTGTCGCGCCATGATGAAGAGGCTGGTGGTCCTGAGGAGGCGGGAGCCGGCGGTGAGGTTCAGCTGCTGCGGCGTCAGGTACGGCGAGTGCCGCCGCAACCACGCGGCCAGCACCGGCGGCCACGCCGTCGACGGCTGCCGCGAGTTCATCGCCGCCGAGGACGGCGGCGGCGGCAACAGCACAAGCGCCGTGGGCGTCGCCGCGGCGGCGCTCAAGTGCGCCGCCTGCGGCTGCCACCGCAGCTTCCACCGCAGGGTGCAGGTGTACGAGGTGGCCTGGGACGACGACTGCGCCTCCGGCGACACCTCCTCCTCCTCGCCGTCGTCGTCGTCCTCGTTGAGCAGCGAGTAGACCAGCTGCGGCAATGGCGGCGGCGCGCCGCCGCCGCAGCTGCCGTCTCCGGCCGGTGCATCGTCATGCTGCATGCCTAGGATATGATCAGACCTCGCGATTGTTAATTAATTAATTAATTAATTAATTATTAGCTTGTGTAATCTGTATACCCATGGATTGATTGACCCTATTCCCCCCAAGTGATTATTTGCTCTCATCTCTAATTAATCAATTAATTAATGCCTTA]




>consensus_5012#1
AAGCTTGGTGCCGAGTGAGAGAGCAGCAAAGCGAGAGTGTGCGTGCGTGGGCGTGTCGCG
CCATGATGAAGAGGCTGGTGGTCCTGAGGAGGCGGGAGCCGGCGGTGAGGTTCAGCTGCT
GCGGCGTCAGGTACGGCGAGTGCCGCCGCAACCACGCGGCCAGCACCGGCGGCCACGCCG
TCGACGGCTGCCGCGAGTTCATCGCCGCCGAGGACGGCGGCGGCGGCAACAGCACAAGCG
CCGTGGGCGTCGCCGCGGCGGCGCTCAAGTGCGCCGCCTGCGGCTGCCACCGCAGCTTCC
ACCGCAGGGTGCAGGTGTACGAGGTGGCCTGGGACGACGACTGCGCCTCCGGCGACACCT
CCTCCTCCTCGCCGTCGTCGTCGTCCTCGTTGAGCAGCGAGTAGACCAGCTGCGGCAATG
GCGGCGGCGCGCCGCCGCCGCAGCTGCCGTCTCCGGCCGGTGCATCGTCATGCTGCATGC
CTAGGATATGATCAGACCTCGCGATTGTTAATTAATTAATTAATTAATTAATTATTAGCT
TGTGTAATCTGTATACCCATGGATTGATTGACCCTATTCCCCCCAAGTGATTATTTGCTC
TCATCTCTAATTAATCAATTAATTAATGCCTTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5012#0      CCATTCCTCTCTTCTTCCTCCCTTTCTCCTCCTCGCCACCTAACGTCGTCGACGCTCGCC 60
consensus_5012#1      ------------------------------------------------------------
                                                                                  

consensus_5012#0      GGCGGCGAGGTGTGATATCTGTGCGGTGATCATCGATGGGGCCTCAGCAAGACCGGTCGG 120
consensus_5012#1      --AAGCTTGGTGCCGAGTGAGAGAGCAGCAAAGCGAGAGTGTGCGTGCGTGGGCGTGTCG 58
                          **  ****     *  * * *  *   * ***  * *     **  *  **    *

consensus_5012#0      CGGCCAAGCCGTACGCGAACGGCAGCACGGCGGCGGCGGCGGCGGCGGGGAGGAAGGAGA 180
consensus_5012#1      CG-CCATGATG-AAGAGGCTGGTGGTCCTGAGGAGGCGGGAGC--CGGCGGTGAGGTTCA 114
                      ** *** *  * * * *   **  *  * * ** *****  **  *** *  ** *   *

consensus_5012#0      ACAACAAGGTGGTGCGGTACAGGGAGTGCCAGCGCAACCACGCCGCCAGCATCGGCGGCC 240
consensus_5012#1      GCTGCTGCGGCGTCAGGTACGGCGAGTGCCGCCGCAACCACGCGGCCAGCACCGGCGGCC 174
                       *  *   *  **  ***** * *******  *********** ******* ********

consensus_5012#0      ACGCCGTCGACGGCTGCCGCGAGTTCAT-------------GGCGTCGG----------- 276
consensus_5012#1      ACGCCGTCGACGGCTGCCGCGAGTTCATCGCCGCCGAGGACGGCGGCGGCGGCAACAGCA 234
                      ****************************             **** ***           

consensus_5012#0      ---GCGCCGAGGGCACCGCCGCCGCGCTCCTC---TGCGCCGCCTGCGGCTGCCACCGGA 330
consensus_5012#1      CAAGCGCCGTGGGCGTCGCCGCGGCGGCGCTCAAGTGCGCCGCCTGCGGCTGCCACCGCA 294
                         ****** ****  ****** ***   ***   *********************** *

consensus_5012#0      GCTTCCACAGGCGAG---AGGTGGAGGCCGCCGCCGCCGAATGCGACTGCTCCTCCGACA 387
consensus_5012#1      GCTTCCACCGCAGGGTGCAGGTGTACGAGGTGGCCTGGGACGACGACTGCGCCTCCGGCG 354
                      ******** *  * *   ***** * *  *  ***   **   ******* ****** * 

consensus_5012#0      CCTCCTCCGGCACCGGCCGCCGGTGATCGCCGTGGATTTGATTCGGCCTCGTCGTGCGAG 447
consensus_5012#1      ACACCTCCTCCTCC--TCGCCG----TCGTCGTCGTCCTCGTTGAGCA-------GCGAG 401
                       * *****  * **   *****    *** *** *   *  **  **        *****

consensus_5012#0      TAGATCAGCATCATCAGCAGGTAAGGTGGTATTGGCGATTTGGCATTCAAAGGATTCGGT 507
consensus_5012#1      TAGACCAGCTGCGGCAATGGCGGCGGCG----CGCCGCCGCCGCAGCTGCCGTCTCCGGC 457
                      **** ****  *  **   *    ** *     * **     ***      *  * *** 

consensus_5012#0      GGATGAATGAATCTGATTGTGTATGAACCGATTAAAAAGTTCTCTTCCTTTTTTTCTTTC 567
consensus_5012#1      CGGTGCATCG---TCATGCTGCATGCCTAGGATATGATCAGACCTCGCGATTGTTAATTA 514
                       * ** **     * **  ** ***    *  **  *      **  *  ** **  ** 

consensus_5012#0      ATATTTTGATTT-TTGGTGAATTGATGGTGTGTAATGTAACATAATATATGTTAAAAAGC 626
consensus_5012#1      ATTAATTAATTAATTAATTATTAGCTTGTGTAATCTGTATACCCATGGAT-TGATTGACC 573
                      **   ** ***  **  * * * * * ****    ****     **  ** * *   * *

consensus_5012#0      ATACGCATAAGAAGCGTTCATGTAACTGCTGTGTCCATGTACAGATTATATTCAGATGAA 686
consensus_5012#1      CTATTCCCCCCAAGTGATTAT-------TTGCTCTCATCTCTAATTAATCAATTAATTAA 626
                       **  *     *** * * **        **    *** *  *  * **      ** **

consensus_5012#0      CATCTTAATTATATTCTGTAAAATAACTGTGCTTTTCAAAA 727
consensus_5012#1      TGCCTTA---------------------------------- 633
                         ****