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Oryza sativa
cluster # 5017 cluster # 5017       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5017#0 length = 1856 sequences # 3  

consensusID : consensus_5017#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1856
fasta sequence
                              [TCATCGTCGGCTCCACTTCCACTTCCTCTTCCTCCTCCTCGAGGACGAGGAGGAAATTGGCAGCTGGAGGCTTGGAGCGCGCTGCATCATCCCGCCCGCCCTGCTGCTGCGGCGATCGCCGGAGCAGGGCTGCAGGGGATCCCCACGGCCGCAGCAGCTGTTGTTATCTGATTCTGTGTGGGGATGGAGGTGGTTCTGCATGAGGGGGATGCCAAAGATTGGGTTTACAAAGGAGAAGGTGCAGCGAATCTAATCCTCAGCTACACTGGCTCGTCACCTTCTATGCTTGGCAAGGTTCTGCGAGTCAAAAAGATTCTAAAAGACAAGGGACAACCGGCACCAAACTGTATAGTCTTCTCAAGTCATGAGGAACATCTGTGGGGCAAGATCCCAGGATTGTTGGAATCTGTTAAAAATGATTGCTTGCCACAAGCCTATGCTACAATTGTTATGAGCCAACATTTGGGTGCCAATCATG-TTGATGGCGGGGTCCGTGTACGTGTGTCTAAGAACTTTTT-CGAGC-TTGCT-GGAAAGAATGTGCTTGACAACCGTCCTGCAT-GGAGAGTGAATGCTAGTGCAATTGATG-CTGGAGCTGATTCTGCTCTTCTAATTTCTGACCACACATTATTTTCCGGTAATCCTAGAGGAAGCAGTTGCATAGCAGTGGAGATAAAGGCAAAATGTGGATTTCTTCCGTCATCTGAATACATATCGAAGGAGAATTCTATCAAGAAACAAGTAACACGGTATAAGATGCATCAGCACCTAAAATTTCATCTGGGAGAGATATCGAAGACAAGTGAATACGATCCCCTAGATTTATTTTCTGGATCAAAAGAAAGAATACATATGGCTATCAAGTCATTTTTTTCAACTCCTCAGAACAACTTTAGAATTTTTGTGGATGGTTCTTTAGTTTTTGGTGGCATGGGAGGTGGCGCAGATAGTGTTCATCCTAATGAAACAGAGAAATGTCTTGAAGATCTGAGCAAGGTTACTGGCTTACAACTATCTGACTTTATTGAGCTCCTGTCAGAGGCAATCTTTAAGTCTGGAGTGTTGGGTAAACTTTTAGCCACTCAAAAACTGGATGATCATGACATCGAAGGGGCGATTCATCTGTACTATAACATCATTTCTCAGCCTTGTTTGGTATGCAAAAGTATAACTGATACAGAACTTCTGCGCAAGTACTCCACCTTGCATTCTCTTCCATTGGACAAGAGTGAGAAGATTGTCAGGGACTTTCTTATCTCTGCTACTGCAAAAGATTGTAGCCTAATGATCAGCTTTCGACCAAGACAGAGTGGAACAACAGATTCTGAGTACGATTCTGTATTTCTTGATTCAGTGAACCAAAGCTATGATTACAAGGCATATTTTATTGATCTGGATGTGAAACCCTTGGATAAGATGGTACATTACTTTAAATTGGATCAAAAGATAGTCAATTTCTACACTAGAAATGGAGAAGTTGGGGGAGATCCACGTGATCCTCCAAAGGGATGTGGCCCTAGGTGACACAAAGGTTCAGCTCCAAAGGTTCAGCTCCAACATTGACGACCTTGAAATATAAAGGGCATAGGACAAGTGTCTGTTGTATCTTGGTGATTGTTGTGTTTCTACAAGTGTGCATGTCCAATGTGCAGGTTCTCCTCCCTTCTAGGGAAAACGTGTAAGAGAGTGGTAGTTGTTGTAGTACATCCTGTATACCGTGTGGTTTGCCTCAGCAGTAGGCCGAATTTTCAGTAGACAAACATTAAGAAGAGTTAATAAACTGTATACTGAGGCATCCACGTTTACCTTGGAAATCTATGATAAATTCCCGTATACTCAGCTTGCTGTGAATCTGTGAT]

[+] EMBL AK102842             [TCATCGTCGGCTCCACTTCCACTTCCTCTTCCTCCTCCTCGAGGACGAGGAGGAAATTGGCAGCTGGAGGCTTGGAGCGCGCTGCATCATCCCGCCCGCCCTGCTGCTGCGGCGATCGCCGGAGCAGGGCTGCAGGGGATCCCCACGGCCGCAGCAGCTGTTGTTATCTGATTCTGTGTGGGGATGGAGGTGGTTCTGCATGAGGGGGATGCCAAAGATTGGGTTTACAAAGGAGAAGGTGCAGCGAATCTAATCCTCAGCTACACTGGCTCGTCACCTTCTATGCTTGGCAAGGTTCTGCGAGTCAAAAAGATTCTAAAAGACAAGGGACAACCGGCACCAAACTGTATAGTCTTCTCAAGTCATGAGGAACATCTGTGGGGCAAGATCCCAGGATTGTTGGAATCTGTTAAAAATGATTGCTTGCCACAAGCCTATGCTACAATTGTTATGAGCCAACATTTGGGTGCCAATCATG TTGATGGCGGGGTCCGTGTACGTGTGTCTAAGAACTTTTT CGAGC TTGCT GGAAAGAATGTGCTTGACAACCGTCCTGCAT GGAGAGTGAATGCTAGTGCAATTGATG CTGGAGCTGATTCTGCTCTTCTAATTTCTGACCACACATTATTTTCCGGTAATCCTAGAGGAAGCAGTTGCATAGCAGTGGAGATAAAGGCAAAATGTGGATTTCTTCCGTCATCTGAATACATATCGAAGGAGAATTCTATCAAGAAACAAGTAACACGGTATAAGATGCATCAGCACCTAAAATTTCATCTGGGAGAGATATCGAAGACAAGTGAATACGATCCCCTAGATTTATTTTCTGGATCAAAAGAAAGAATACATATGGCTATCAAGTCATTTTTTTCAACTCCTCAGAACAACTTTAGAATTTTTGTGGATGGTTCTTTAGTTTTTGGTGGCATGGGAGGTGGCGCAGATAGTGTTCATCCTAATGAAACAGAGAAATGTCTTGAAGATCTGAGCAAGGTTACTGGCTTACAACTATCTGACTTTATTGAGCTCCTGTCAGAGGCAATCTTTAAGTCTGGAGTGTTGGGTAAACTTTTAGCCACTCAAAAACTGGATGATCATGACATCGAAGGGGCGATTCATCTGTACTATAACATCATTTCTCAGCCTTGTTTGGTATGCAAAAGTATAACTGATACAGAACTTCTGCGCAAGTACTCCACCTTGCATTCTCTTCCATTGGACAAGAGTGAGAAGATTGTCAGGGACTTTCTTATCTCTGCTACTGCAAAAGATTGTAGCCTAATGATCAGCTTTCGACCAAGACAGAGTGGAACAACAGATTCTGAGTACGATTCTGTATTTCTTGATTCAGTGAACCAAAGCTATGATTACAAGGCATATTTTATTGATCTGGATGTGAAACCCTTGGATAAGATGGTACATTACTTTAAATTGGATCAAAAGATAGTCAATTTCTACACTAGAAATGGAGAAGTTGGGGGAGATCCACGTGATCCTCCAAAGGGATGTGGCCCTAGGTGACACAAAGGTTCAGCTCCAAAGGTTCAGCTCCAACATTGACGACCTTGAAATATAAAGGGCATAGGACAAGTGTCTGTTGTATCTTGGTGATTGTTGTGTTTCTACAAGTGTGCATGTCCAATGTGCAGGTTCTCCTCCCTTCTAGGGAAAACGTGTAAGAGAGTGGTAGTTGTTGTAGTACATCCTGTATACCGTGTGGTTTGCCTCAGCAGTAGGCCGAATTTTCAGTAGACAAACATTAAGAAGAGTTAATAAACTGTATACTGAGGCATCCACGTTTACCTTGGAAATCTATGATAAATTCCCGTATACTCAGCTTGCTGTGAATCTGTGAT]
[+] EMBL C73039               [                                                                                                                                                                                                                    CAAAGATTGGGTTTACAAAGGAGAAGGTGCAGCGAATCTAATCCTCAGCTACACTGGCTCGTCACCTTCTATGCTTGGCAAGGTTCTGCGAGTCAAAAAGATTCTAAAAGACAAGGGACAACCGGCACCAAACTGTATAGTCTTCTCAAGTCATGAGGAACATCTGTGGGGCAAGATCCCAGGATTGTTGGAATCTGTTAAAAATGATTGCTTGCCACAAGCCTATGCTACAATTGTTATGAGCCAACATTTGGGTGCCAATCATGTTTGATGGCGGGGTCCGTGTACGTGTGTCTAAGACTTTTTTCCGAGCTTTGCTGGGAAAGAATGTGCTTGAC ACCGTCCTGCATNGGAGAGTG ATGCNAATGCATTTGATGCCTGGA CTGATc                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL AA750614             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             AGGGACTTTCTTATCTCTGCTACTGCAAAAGATTGTAGCCTAATGATCAGCTTTCGACCAAGACAGAGTGGAACAACAGATTCTGAGTACGATTCTGTATTTCTTGATTCAGTGAACCAAAGCTATGATTACAAGGCATATTTTATTGATCTGGATGTGAAACCCTTGGATAAGATGGTACATTACTTTAAATTGGATCAAAAGATAGTCAATTTCTACACTAG                                                                                                                                                                                                                                                                                                                                                                                                         ]


>consensus_5017#0 TCATCGTCGGCTCCACTTCCACTTCCTCTTCCTCCTCCTCGAGGACGAGGAGGAAATTGG CAGCTGGAGGCTTGGAGCGCGCTGCATCATCCCGCCCGCCCTGCTGCTGCGGCGATCGCC GGAGCAGGGCTGCAGGGGATCCCCACGGCCGCAGCAGCTGTTGTTATCTGATTCTGTGTG GGGATGGAGGTGGTTCTGCATGAGGGGGATGCCAAAGATTGGGTTTACAAAGGAGAAGGT GCAGCGAATCTAATCCTCAGCTACACTGGCTCGTCACCTTCTATGCTTGGCAAGGTTCTG CGAGTCAAAAAGATTCTAAAAGACAAGGGACAACCGGCACCAAACTGTATAGTCTTCTCA AGTCATGAGGAACATCTGTGGGGCAAGATCCCAGGATTGTTGGAATCTGTTAAAAATGAT TGCTTGCCACAAGCCTATGCTACAATTGTTATGAGCCAACATTTGGGTGCCAATCATGTT GATGGCGGGGTCCGTGTACGTGTGTCTAAGAACTTTTTCGAGCTTGCTGGAAAGAATGTG CTTGACAACCGTCCTGCATGGAGAGTGAATGCTAGTGCAATTGATGCTGGAGCTGATTCT GCTCTTCTAATTTCTGACCACACATTATTTTCCGGTAATCCTAGAGGAAGCAGTTGCATA GCAGTGGAGATAAAGGCAAAATGTGGATTTCTTCCGTCATCTGAATACATATCGAAGGAG AATTCTATCAAGAAACAAGTAACACGGTATAAGATGCATCAGCACCTAAAATTTCATCTG GGAGAGATATCGAAGACAAGTGAATACGATCCCCTAGATTTATTTTCTGGATCAAAAGAA AGAATACATATGGCTATCAAGTCATTTTTTTCAACTCCTCAGAACAACTTTAGAATTTTT GTGGATGGTTCTTTAGTTTTTGGTGGCATGGGAGGTGGCGCAGATAGTGTTCATCCTAAT GAAACAGAGAAATGTCTTGAAGATCTGAGCAAGGTTACTGGCTTACAACTATCTGACTTT ATTGAGCTCCTGTCAGAGGCAATCTTTAAGTCTGGAGTGTTGGGTAAACTTTTAGCCACT CAAAAACTGGATGATCATGACATCGAAGGGGCGATTCATCTGTACTATAACATCATTTCT CAGCCTTGTTTGGTATGCAAAAGTATAACTGATACAGAACTTCTGCGCAAGTACTCCACC TTGCATTCTCTTCCATTGGACAAGAGTGAGAAGATTGTCAGGGACTTTCTTATCTCTGCT ACTGCAAAAGATTGTAGCCTAATGATCAGCTTTCGACCAAGACAGAGTGGAACAACAGAT TCTGAGTACGATTCTGTATTTCTTGATTCAGTGAACCAAAGCTATGATTACAAGGCATAT TTTATTGATCTGGATGTGAAACCCTTGGATAAGATGGTACATTACTTTAAATTGGATCAA AAGATAGTCAATTTCTACACTAGAAATGGAGAAGTTGGGGGAGATCCACGTGATCCTCCA AAGGGATGTGGCCCTAGGTGACACAAAGGTTCAGCTCCAAAGGTTCAGCTCCAACATTGA CGACCTTGAAATATAAAGGGCATAGGACAAGTGTCTGTTGTATCTTGGTGATTGTTGTGT TTCTACAAGTGTGCATGTCCAATGTGCAGGTTCTCCTCCCTTCTAGGGAAAACGTGTAAG AGAGTGGTAGTTGTTGTAGTACATCCTGTATACCGTGTGGTTTGCCTCAGCAGTAGGCCG AATTTTCAGTAGACAAACATTAAGAAGAGTTAATAAACTGTATACTGAGGCATCCACGTT TACCTTGGAAATCTATGATAAATTCCCGTATACTCAGCTTGCTGTGAATCTGTGAT



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)