cluster # 5019

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Oryza sativa
cluster # 5019 cluster # 5019 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5019#0 length = 771 sequences # 2

consensus_5019#1 length = 277 sequences # 1

consensusID : consensus_5019#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 771
fasta sequence

                              [GCCAAGCCCAAGCAACCGCCTCCTCATGCTCCTCCTCCGCCGCCGCCCCCGCCTCCGGTGGAGGGCAAGCCCAAGCCTCCTCCTCATGCGCCGCCGCCGCCGCCTCCGGAGGCCAAGAAGAGCTTCATGCGCCGCATGTTCCCCTTCCTCCTCGCCGCCAACGTCTTCGTCGGAGCTTATATGCTTATGAGGACCTACCAAAAGGACTCGGGAAAGAAAGATACCGAGAATGATCCTACTTCTTCTACGCCGACCTCATCTCCCGCGGCTGCTGAGAAGCCTGCAGAACCAATTGTTGCACCCATAAAGGTGCTCACACCAATCTCCCAAGACGATCAGCGCCAGCTGTACAAATGGATGCTGGAGGAGAAGCGCAAGATCAAGCCACGCGATGCTGCGGAGAAGAAGAAGATTAACGGGGAGAAGGCCCTTCTCAAAGAGTTCATACGAGCAGGATCCCTTCCAAGCCTATAAGATCGCCAATTAACTATTATTTGGATCTGTAGTGCTCTTGTGTTTGATGATTGACTGGGAACGGTGCGAGTTTGATTGTATTTACAAGTCCAGCACTGTAATCAGATTTCCAAATGATAGTTGTGGAAAGACCCTGTTGAGCTTGATCTCCTGAATTGAATTGGCTTCTTTCATAGGACATGTTGGGTATCAAGAAGCCGATTTCTGGGAGGCATGGAAGATGATGTATGAAACTATTATCAGTGTTGATTTGGGCTTTTCAGCTATTGGTGCCTGTGTAAGTTCATCAGCAAAAAA]

[+] EMBL AK059115             [GCCAAGCCCAAGCAACCGCCTCCTCATGCTCCTCCTCCGCCGCCGCCCCCGCCTCCGGTGGAGGGCAAGCCCAAGCCTCCTCCTCATGCGCCGCCGCCGCCGCCTCCGGAGGCCAAGAAGAGCTTCATGCGCCGCATGTTCCCCTTCCTCCTCGCCGCCAACGTCTTCGTCGGAGCTTATATGCTTATGAGGACCTACCAAAAGGACTCGGGAAAGAAAGATACCGAGAATGATCCTACTTCTTCTACGCCGACCTCATCTCCCGCGGCTGCTGAGAAGCCTGCAGAACCAATTGTTGCACCCATAAAGGTGCTCACACCAATCTCCCAAGACGATCAGCGCCAGCTGTACAAATGGATGCTGGAGGAGAAGCGCAAGATCAAGCCACGCGATGCTGCGGAGAAGAAGAAGATTAACGGGGAGAAGGCCCTTCTCAAAGAGTTCATACGAGCAGGATCCCTTCCAAGCCTATAAGATCGCCAATTAACTATTATTTGGATCTGTAGTGCTCTTGTGTTTGATGATTGACTGGGAACGGTGCGAGTTTGATTGTATTTACAAGTCCAGCACTGTAATCAGATTTCCAAATGATAGTTGTGGAAAGACCCTGTTGAGCTTGATCTCCTGAATTGAATT                                                                                                                                       ]
[+] EMBL BI806929             [                                                                                                              GGCC AGAAGAGCTTCATGC CCGCATGTTCCCCTTCCTCCTCGCCGCCAACGTCTTCGTCGGAGCTTATATGCTTATGAGGACCTACC AAAGGACTCGGGAAAGAAAGATACCGAGAATGATCCTACTTCTTCTACGCCGACCTCATCTCCCGCGGCTGCTGAGAAGCCTGCAGAACCAATTGTTGCACCCATAAAGGTGCTCACACCAATCTCCCAAGACGATCAGCGCCAGCTGTACAAATGGATGCTGGAGGAGAAGCGCAAGATCAAGCCACGCGATGCTGCGGAGAAGAAGAAGATTAACGGGGAGAAGGCCCTTCTCAAAGAGTTCATACGAGCAGGATCCCTTCCAAGCCTATAAGATCGCCAATTAACTATTATTTGGATCTGTAGTGCTCTTGTGTTTGATGATTGACTGGGAACGGTGCGAGTTTGATTGTATTTACAAGTCCAGCACTGTAATCAGATTTCCAAATGATAGTTGTGGAAAGACCCTGTTGAGCTTGATCTCCTGAATTGAATTGGCTTCTTTCATAGGACATGTTGGGTATCAAGAAGCCGATTTCTGGGAGGCATGGAAGATGATGTATGAAACTATTATCAGTGTTGATTTGGGCTTTTCAGCTATTGGTGCCTGTGTAAGTTCATCAGCAAAAAA]




>consensus_5019#0
GCCAAGCCCAAGCAACCGCCTCCTCATGCTCCTCCTCCGCCGCCGCCCCCGCCTCCGGTG
GAGGGCAAGCCCAAGCCTCCTCCTCATGCGCCGCCGCCGCCGCCTCCGGAGGCCAAGAAG
AGCTTCATGCGCCGCATGTTCCCCTTCCTCCTCGCCGCCAACGTCTTCGTCGGAGCTTAT
ATGCTTATGAGGACCTACCAAAAGGACTCGGGAAAGAAAGATACCGAGAATGATCCTACT
TCTTCTACGCCGACCTCATCTCCCGCGGCTGCTGAGAAGCCTGCAGAACCAATTGTTGCA
CCCATAAAGGTGCTCACACCAATCTCCCAAGACGATCAGCGCCAGCTGTACAAATGGATG
CTGGAGGAGAAGCGCAAGATCAAGCCACGCGATGCTGCGGAGAAGAAGAAGATTAACGGG
GAGAAGGCCCTTCTCAAAGAGTTCATACGAGCAGGATCCCTTCCAAGCCTATAAGATCGC
CAATTAACTATTATTTGGATCTGTAGTGCTCTTGTGTTTGATGATTGACTGGGAACGGTG
CGAGTTTGATTGTATTTACAAGTCCAGCACTGTAATCAGATTTCCAAATGATAGTTGTGG
AAAGACCCTGTTGAGCTTGATCTCCTGAATTGAATTGGCTTCTTTCATAGGACATGTTGG
GTATCAAGAAGCCGATTTCTGGGAGGCATGGAAGATGATGTATGAAACTATTATCAGTGT
TGATTTGGGCTTTTCAGCTATTGGTGCCTGTGTAAGTTCATCAGCAAAAAA

consensusID : consensus_5019#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 277
fasta sequence

                              [TATAAGATCGCCAATTAACTATTATTTGGATCTGTAGTGCTCTTGTGTTTGATGATTGATTGGGAACGGTGCGAGTTTGATTGTATTTACAAGTCCAGCACTGTAATCAGATTTCCAAATGATAGTTGTGGAAAGACCTTGTTGAGCTTGATCTCCTGAATTGAATTGGCTTCTTTCATAGGACATGTTGGGTATCAAGAAGCCGATTTCTGGGAGGCATGGAAGATGATGTATGAAACTATTATCAGTGTTAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL CF318297             [TATAAGATCGCCAATTAACTATTATTTGGATCTGTAGTGCTCTTGTGTTTGATGATTGATTGGGAACGGTGCGAGTTTGATTGTATTTACAAGTCCAGCACTGTAATCAGATTTCCAAATGATAGTTGTGGAAAGACCTTGTTGAGCTTGATCTCCTGAATTGAATTGGCTTCTTTCATAGGACATGTTGGGTATCAAGAAGCCGATTTCTGGGAGGCATGGAAGATGATGTATGAAACTATTATCAGTGTTAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_5019#1
TATAAGATCGCCAATTAACTATTATTTGGATCTGTAGTGCTCTTGTGTTTGATGATTGAT
TGGGAACGGTGCGAGTTTGATTGTATTTACAAGTCCAGCACTGTAATCAGATTTCCAAAT
GATAGTTGTGGAAAGACCTTGTTGAGCTTGATCTCCTGAATTGAATTGGCTTCTTTCATA
GGACATGTTGGGTATCAAGAAGCCGATTTCTGGGAGGCATGGAAGATGATGTATGAAACT
ATTATCAGTGTTAAAAAAAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5019#0      GCCAAGCCCAAGCAACCGCCTCCTCATGCTCCTCCTCCGCCGCCGCCCCCGCCTCCGGTG 60
consensus_5019#1      ------------------------------------------------------------
                                                                                  

consensus_5019#0      GAGGGCAAGCCCAAGCCTCCTCCTCATGCGCCGCCGCCGCCGCCTCCGGAGGCCAAGAAG 120
consensus_5019#1      ------------------------------------------------------------
                                                                                  

consensus_5019#0      AGCTTCATGCGCCGCATGTTCCCCTTCCTCCTCGCCGCCAACGTCTTCGTCGGAGCTTAT 180
consensus_5019#1      ------------------------------------------------------------
                                                                                  

consensus_5019#0      ATGCTTATGAGGACCTACCAAAAGGACTCGGGAAAGAAAGATACCGAGAATGATCCTACT 240
consensus_5019#1      ------------------------------------------------------------
                                                                                  

consensus_5019#0      TCTTCTACGCCGACCTCATCTCCCGCGGCTGCTGAGAAGCCTGCAGAACCAATTGTTGCA 300
consensus_5019#1      ------------------------------------------------------------
                                                                                  

consensus_5019#0      CCCATAAAGGTGCTCACACCAATCTCCCAAGACGATCAGCGCCAGCTGTACAAATGGATG 360
consensus_5019#1      ------------------------------------------------------------
                                                                                  

consensus_5019#0      CTGGAGGAGAAGCGCAAGATCAAGCCACGCGATGCTGCGGAGAAGAAGAAGATTAACGGG 420
consensus_5019#1      ------------------------------------------------------------
                                                                                  

consensus_5019#0      GAGAAGGCCCTTCTCAAAGAGTTCATACGAGCAGGATCCCTTCCAAGCCTATAAGATCGC 480
consensus_5019#1      -------------------------------------------------TATAAGATCGC 11
                                                                       ***********

consensus_5019#0      CAATTAACTATTATTTGGATCTGTAGTGCTCTTGTGTTTGATGATTGACTGGGAACGGTG 540
consensus_5019#1      CAATTAACTATTATTTGGATCTGTAGTGCTCTTGTGTTTGATGATTGATTGGGAACGGTG 71
                      ************************************************ ***********

consensus_5019#0      CGAGTTTGATTGTATTTACAAGTCCAGCACTGTAATCAGATTTCCAAATGATAGTTGTGG 600
consensus_5019#1      CGAGTTTGATTGTATTTACAAGTCCAGCACTGTAATCAGATTTCCAAATGATAGTTGTGG 131
                      ************************************************************

consensus_5019#0      AAAGACCCTGTTGAGCTTGATCTCCTGAATTGAATTGGCTTCTTTCATAGGACATGTTGG 660
consensus_5019#1      AAAGACCTTGTTGAGCTTGATCTCCTGAATTGAATTGGCTTCTTTCATAGGACATGTTGG 191
                      ******* ****************************************************

consensus_5019#0      GTATCAAGAAGCCGATTTCTGGGAGGCATGGAAGATGATGTATGAAACTATTATCAGTGT 720
consensus_5019#1      GTATCAAGAAGCCGATTTCTGGGAGGCATGGAAGATGATGTATGAAACTATTATCAGTGT 251
                      ************************************************************

consensus_5019#0      TGATTTGGGCTTTTCAGCTATTGGTGCCTGTGTAAGTTCATCAGCAAAAAA 771
consensus_5019#1      TAAAAAAAAAAAAAAAAAAAAAAAAA------------------------- 277
                      * *            *   *