cluster # 5022

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Oryza sativa
cluster # 5022 cluster # 5022 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5022#0 length = 1056 sequences # 1

consensus_5022#1 length = 747 sequences # 1
consensus_5022#2 length = 155 sequences # 1

consensusID : consensus_5022#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1056
fasta sequence

                              [TCTTCGCCGCCGCTCCCGTTCCCGCTCGCCGTCTCGCGATATCGGATCGAGGGTGGCCGGCTGCTACGACTCGCGCACGCGGCAGGCATGGCGACGAAGCGCAAGTGCCCCGCCAATGGCGACGACGGCGGCGTGGCCGACCTCGAGCCGGTAGCAGGTGGTTCCTTCGCCTCCCCGCCGCCGGAGAAGAAGGCCAAGTTGACCGTCGCCGTCGCCGTCGCCGTCGCGCCCTCCTCCTCCTCTTCTGCTACCACCGCTGCCGCGGGGGAGGCGACGGCCAAGCGCGAGCACGGAGGCTTCTTCGCCTTCGCGAGGCCCGAGAACAACACCAGGCTGAGCGTCGCCGTCGCGTCCTCCTCCTCTTCTGCATCCGCCGCCGCGGAGAAGGCGATGGCCAAGCTGACCGTCGCCGGCGTCGCGCCCTCCTCTTCTGCATCCGCCGCCGCCGCGGGGAAGGCGACGGCCAAGCGCGAGTACGGCGGCTTCTGCGCCTTCGCGAGGCCCGACGACAAAACCAGGTGGCGCGTCGCTGTCGCGTCGTCCGCCGCCGCCGCGGCGGACGCGTCGTATTCTTCTTCGTCGCCGGCGACGGGGGAGCAGCCGGAGGCGAACCGGTGCGCGACGTGCCGGAGGAAGGTGGGGCTGACGGGGTTCAAGTGCCGGTGCGGCGGCACGTTCTGCGGCGGCCACCGCTACGCCGACGAGCACGACTGCGGCTTCGACTACAAGAGCTCCGGGAGGGAGCTGATCGCCAAGCAGAATCCGGTCGTCGTCGCCGACAAGCTGGCCTTCAGGATTTGATCAAGAATCCTCAACCACTATCCATGAGGTCAAATCGAAGTAGCCGATCAAAGATCAATGATCTGTTCTTCAATCTTGTGGGAAGTTGAATCCTTGTTTGCAATGATCGATTTTCTGTGCTCAGCGCACAATTAATTTGATGTAATTTTCGTCAAAGAAAAGTTAGTTGTAGTTCGCTGTAACAGAGTCAGTTTAATTCAGTTGATGTATCTATTTGGATCGATTGATATGTGCAGAAGCAAAGTACAAGTCTTT]

[+] EMBL AK108384             [TCTTCGCCGCCGCTCCCGTTCCCGCTCGCCGTCTCGCGATATCGGATCGAGGGTGGCCGGCTGCTACGACTCGCGCACGCGGCAGGCATGGCGACGAAGCGCAAGTGCCCCGCCAATGGCGACGACGGCGGCGTGGCCGACCTCGAGCCGGTAGCAGGTGGTTCCTTCGCCTCCCCGCCGCCGGAGAAGAAGGCCAAGTTGACCGTCGCCGTCGCCGTCGCCGTCGCGCCCTCCTCCTCCTCTTCTGCTACCACCGCTGCCGCGGGGGAGGCGACGGCCAAGCGCGAGCACGGAGGCTTCTTCGCCTTCGCGAGGCCCGAGAACAACACCAGGCTGAGCGTCGCCGTCGCGTCCTCCTCCTCTTCTGCATCCGCCGCCGCGGAGAAGGCGATGGCCAAGCTGACCGTCGCCGGCGTCGCGCCCTCCTCTTCTGCATCCGCCGCCGCCGCGGGGAAGGCGACGGCCAAGCGCGAGTACGGCGGCTTCTGCGCCTTCGCGAGGCCCGACGACAAAACCAGGTGGCGCGTCGCTGTCGCGTCGTCCGCCGCCGCCGCGGCGGACGCGTCGTATTCTTCTTCGTCGCCGGCGACGGGGGAGCAGCCGGAGGCGAACCGGTGCGCGACGTGCCGGAGGAAGGTGGGGCTGACGGGGTTCAAGTGCCGGTGCGGCGGCACGTTCTGCGGCGGCCACCGCTACGCCGACGAGCACGACTGCGGCTTCGACTACAAGAGCTCCGGGAGGGAGCTGATCGCCAAGCAGAATCCGGTCGTCGTCGCCGACAAGCTGGCCTTCAGGATTTGATCAAGAATCCTCAACCACTATCCATGAGGTCAAATCGAAGTAGCCGATCAAAGATCAATGATCTGTTCTTCAATCTTGTGGGAAGTTGAATCCTTGTTTGCAATGATCGATTTTCTGTGCTCAGCGCACAATTAATTTGATGTAATTTTCGTCAAAGAAAAGTTAGTTGTAGTTCGCTGTAACAGAGTCAGTTTAATTCAGTTGATGTATCTATTTGGATCGATTGATATGTGCAGAAGCAAAGTACAAGTCTTT]




>consensus_5022#0
TCTTCGCCGCCGCTCCCGTTCCCGCTCGCCGTCTCGCGATATCGGATCGAGGGTGGCCGG
CTGCTACGACTCGCGCACGCGGCAGGCATGGCGACGAAGCGCAAGTGCCCCGCCAATGGC
GACGACGGCGGCGTGGCCGACCTCGAGCCGGTAGCAGGTGGTTCCTTCGCCTCCCCGCCG
CCGGAGAAGAAGGCCAAGTTGACCGTCGCCGTCGCCGTCGCCGTCGCGCCCTCCTCCTCC
TCTTCTGCTACCACCGCTGCCGCGGGGGAGGCGACGGCCAAGCGCGAGCACGGAGGCTTC
TTCGCCTTCGCGAGGCCCGAGAACAACACCAGGCTGAGCGTCGCCGTCGCGTCCTCCTCC
TCTTCTGCATCCGCCGCCGCGGAGAAGGCGATGGCCAAGCTGACCGTCGCCGGCGTCGCG
CCCTCCTCTTCTGCATCCGCCGCCGCCGCGGGGAAGGCGACGGCCAAGCGCGAGTACGGC
GGCTTCTGCGCCTTCGCGAGGCCCGACGACAAAACCAGGTGGCGCGTCGCTGTCGCGTCG
TCCGCCGCCGCCGCGGCGGACGCGTCGTATTCTTCTTCGTCGCCGGCGACGGGGGAGCAG
CCGGAGGCGAACCGGTGCGCGACGTGCCGGAGGAAGGTGGGGCTGACGGGGTTCAAGTGC
CGGTGCGGCGGCACGTTCTGCGGCGGCCACCGCTACGCCGACGAGCACGACTGCGGCTTC
GACTACAAGAGCTCCGGGAGGGAGCTGATCGCCAAGCAGAATCCGGTCGTCGTCGCCGAC
AAGCTGGCCTTCAGGATTTGATCAAGAATCCTCAACCACTATCCATGAGGTCAAATCGAA
GTAGCCGATCAAAGATCAATGATCTGTTCTTCAATCTTGTGGGAAGTTGAATCCTTGTTT
GCAATGATCGATTTTCTGTGCTCAGCGCACAATTAATTTGATGTAATTTTCGTCAAAGAA
AAGTTAGTTGTAGTTCGCTGTAACAGAGTCAGTTTAATTCAGTTGATGTATCTATTTGGA
TCGATTGATATGTGCAGAAGCAAAGTACAAGTCTTT

consensusID : consensus_5022#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 747
fasta sequence

                              [ACCCACCCTGTACCCGCCGCTCGATCGCCGCCGTTCTCGCCCGAAGAAGGAAAGCGCCATGGCGTCGATGAAGCGGAAGTGCCCCGATGACGAGACGGCCTGCGGCTCCGGCGCCGGCGCCGCCATGTGCGTCACCGGCTGCGGATTCTTCGGCTCCGAGGCCACCAACAACATGTGCTCCCGGTGCTACCGCGAGCACTCCGCGGACAACGACGCCGTGGAGGAGGCGGCGGCAGCCAACAGCGACCTCGAGCTGGTTGGCGTGGCGGAGACGACGACGAAGAAGGCCAGGATGAGCGCCGTCGTCCCCGTCGCCGTCGCGTCATCTTCATCGGCGGCGGCAGAGCAGCCGGCGGCGAAGGCTGCTACGGCGCCGAACCGGTGCGCGGCGTGCCGGAAGAAGGTGGGGCTGACGGGGTTCAAGTGCCGGTGCGGCGGCAACTTCTGTGGCGGCCACCGCCACGCCGACGCCCACGGCTGCGGCTTCGACTACAAGAGCGCCGGGAAGGAGCAGATCGCCAAGCAGAACCCGCTCGTCGTCGCCGACAAGCTGGCCACCCGGATTTGAGCTCTCCTCTCTCTCTTCCATGGAATCCAACAGCAGTCTGCAAAACCATCGACGAGCACAAGCAAACATTGAGTAGCAAGCTCAGTGATCTGTTCTGAAACATGTAAGATTGAATACTTGCATGTAATTTAGTATTTGTTTTCACTGAAGAAACATGTTCCCATTGACAATAATCTTTA]

[+] EMBL AK108205             [ACCCACCCTGTACCCGCCGCTCGATCGCCGCCGTTCTCGCCCGAAGAAGGAAAGCGCCATGGCGTCGATGAAGCGGAAGTGCCCCGATGACGAGACGGCCTGCGGCTCCGGCGCCGGCGCCGCCATGTGCGTCACCGGCTGCGGATTCTTCGGCTCCGAGGCCACCAACAACATGTGCTCCCGGTGCTACCGCGAGCACTCCGCGGACAACGACGCCGTGGAGGAGGCGGCGGCAGCCAACAGCGACCTCGAGCTGGTTGGCGTGGCGGAGACGACGACGAAGAAGGCCAGGATGAGCGCCGTCGTCCCCGTCGCCGTCGCGTCATCTTCATCGGCGGCGGCAGAGCAGCCGGCGGCGAAGGCTGCTACGGCGCCGAACCGGTGCGCGGCGTGCCGGAAGAAGGTGGGGCTGACGGGGTTCAAGTGCCGGTGCGGCGGCAACTTCTGTGGCGGCCACCGCCACGCCGACGCCCACGGCTGCGGCTTCGACTACAAGAGCGCCGGGAAGGAGCAGATCGCCAAGCAGAACCCGCTCGTCGTCGCCGACAAGCTGGCCACCCGGATTTGAGCTCTCCTCTCTCTCTTCCATGGAATCCAACAGCAGTCTGCAAAACCATCGACGAGCACAAGCAAACATTGAGTAGCAAGCTCAGTGATCTGTTCTGAAACATGTAAGATTGAATACTTGCATGTAATTTAGTATTTGTTTTCACTGAAGAAACATGTTCCCATTGACAATAATCTTTA]




>consensus_5022#1
ACCCACCCTGTACCCGCCGCTCGATCGCCGCCGTTCTCGCCCGAAGAAGGAAAGCGCCAT
GGCGTCGATGAAGCGGAAGTGCCCCGATGACGAGACGGCCTGCGGCTCCGGCGCCGGCGC
CGCCATGTGCGTCACCGGCTGCGGATTCTTCGGCTCCGAGGCCACCAACAACATGTGCTC
CCGGTGCTACCGCGAGCACTCCGCGGACAACGACGCCGTGGAGGAGGCGGCGGCAGCCAA
CAGCGACCTCGAGCTGGTTGGCGTGGCGGAGACGACGACGAAGAAGGCCAGGATGAGCGC
CGTCGTCCCCGTCGCCGTCGCGTCATCTTCATCGGCGGCGGCAGAGCAGCCGGCGGCGAA
GGCTGCTACGGCGCCGAACCGGTGCGCGGCGTGCCGGAAGAAGGTGGGGCTGACGGGGTT
CAAGTGCCGGTGCGGCGGCAACTTCTGTGGCGGCCACCGCCACGCCGACGCCCACGGCTG
CGGCTTCGACTACAAGAGCGCCGGGAAGGAGCAGATCGCCAAGCAGAACCCGCTCGTCGT
CGCCGACAAGCTGGCCACCCGGATTTGAGCTCTCCTCTCTCTCTTCCATGGAATCCAACA
GCAGTCTGCAAAACCATCGACGAGCACAAGCAAACATTGAGTAGCAAGCTCAGTGATCTG
TTCTGAAACATGTAAGATTGAATACTTGCATGTAATTTAGTATTTGTTTTCACTGAAGAA
ACATGTTCCCATTGACAATAATCTTTA

consensusID : consensus_5022#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 155
fasta sequence

                              [TCTTTTTTTTTTTTTTTTGGTTCATAAATAAAGATTATTGTCATTGGGAACATGTTTCTTCAGTGAAAACAAATACGAAATTACATGCAAGTATTCAATCTTACATGTTTCAAAACAGATCACTGAGCTTGCTACTCTATGACCCCTTGTCTCGT]

[+] EMBL CA760529             [TCTTTTTTTTTTTTTTTTGGTTCATAAATAAAGATTATTGTCATTGGGAACATGTTTCTTCAGTGAAAACAAATACGAAATTACATGCAAGTATTCAATCTTACATGTTTCAAAACAGATCACTGAGCTTGCTACTCTATGACCCCTTGTCTCGT]




>consensus_5022#2
TCTTTTTTTTTTTTTTTTGGTTCATAAATAAAGATTATTGTCATTGGGAACATGTTTCTT
CAGTGAAAACAAATACGAAATTACATGCAAGTATTCAATCTTACATGTTTCAAAACAGAT
CACTGAGCTTGCTACTCTATGACCCCTTGTCTCGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5022#0      TCTTCGCCGCCGCTCCCGTTCCCGCTCGCCGTCTCGCGATATCGGATCGAGGGTGGCCGG 60
consensus_5022#1      ------------------------------------------------------------
consensus_5022#2      ------------------------------------------------------------
                                                                                  

consensus_5022#0      CTGCTACGACTCGCGCACGCGGCAGGCATGGCGACGAAGCGCAAGTGCCCCGCCAATGGC 120
consensus_5022#1      ------------------------------------------------------------
consensus_5022#2      ------------------------------------------------------------
                                                                                  

consensus_5022#0      GACGACGGCGGCGTGGCCGACCTCGAGCCGGTAGCAGGTGGTTCCTTCGCCTCCCCGCCG 180
consensus_5022#1      ------------------------------------------------------------
consensus_5022#2      ------------------------------------------------------------
                                                                                  

consensus_5022#0      CCGGAGAAGAAGGCCAAGTTGACCGTCGCCGTCGCCGTCGCCGTCGCGCCCTCCTCCTCC 240
consensus_5022#1      -------------------------------------------ACCCACCCTGTACCCGC 17
consensus_5022#2      ------------------------------------------------------------
                                                                                  

consensus_5022#0      TCTTCTGCTACCACCGCTGCCGCGGGGGAGGCGACGGCCAAGCGCGAGCACGGAGGCTTC 300
consensus_5022#1      CGCTCGATCGCCGCCGTTCTCGCCCGAAGAAGGAAAGCGCCATGGCGTCGATGAAGCGGA 77
consensus_5022#2      ------------------------------------------------------------
                                                                                  

consensus_5022#0      TTCGCCTTCGCGAGGCCCGAGAACAACACCAGGCTGAGCGTCGCCGTCGC-GTCCTCCTC 359
consensus_5022#1      AGTGCCCCGATGA----CGAGACGGCCTGCGGCTCCGGCGCCGGCGCCGCCATGTGCGTC 133
consensus_5022#2      ------------------------------------------------------------
                                                                                  

consensus_5022#0      CTCTTCTGCATCCGCCGCCGCGGAGAAGGCGATGGCCAAGCTGACCGTCGCCGGCGTCGC 419
consensus_5022#1      ACCGGCTGCGGATTCTTCGGCTCCGAGGCCACCAACAACATGTGCTCCCGGTGCTACCGC 193
consensus_5022#2      ------------------------------------------------------------
                                                                                  

consensus_5022#0      GCCCTCCTCTTCTGCATCCGCCGCCGCCGCGGGGAAGGCGACGGCCAAGCGCGAGTACGG 479
consensus_5022#1      GAGCACTCCGCGGACAAC-GACGCCGTGGAGGAGGCGGCGGCAGCCAACAGCGACCTCGA 252
consensus_5022#2      ------------------------------------------------------------
                                                                                  

consensus_5022#0      CGGCTTCTGCGCCTTCGCGAGGCCCGACGACAAAACCAGGTGGCGCGTCGCTGTCGCGTC 539
consensus_5022#1      GCTGGTTGGCGTGGCGGAGACGACGACGAAGAAGGCCAGGATGAGCGCCGTCGTC----- 307
consensus_5022#2      ------------------------------------------------------------
                                                                                  

consensus_5022#0      GTCCGCCGCCGCCGCGGCGGACGCGTCGTATTCTTCTTCGTCGCCGGCGACGGGGGAGCA 599
consensus_5022#1      -CCCGTCGCCGTCGCGTCATCTTCATCGGCGGCGGCAGAGCAGCCGGCGGCGAAGGCTGC 366
consensus_5022#2      ------------------------------------------------------------
                                                                                  

consensus_5022#0      GCCGGAGGCGAACCGGTGCGCGACGTGCCGGAGGAAGGTGGGGCTGACGGGGTTCAAGTG 659
consensus_5022#1      TACGGCGCCGAACCGGTGCGCGGCGTGCCGGAAGAAGGTGGGGCTGACGGGGTTCAAGTG 426
consensus_5022#2      ------------------------------------------------------------
                                                                                  

consensus_5022#0      CCGGTGCGGCGGCACGTTCTGCGGCGGCCACCGCTACGCCGACGAGCACGACTGCGGCTT 719
consensus_5022#1      CCGGTGCGGCGGCAACTTCTGTGGCGGCCACCGCCACGCCGACGCCCACGGCTGCGGCTT 486
consensus_5022#2      ------------------------------------------------------------
                                                                                  

consensus_5022#0      CGACTACAAGAGCTCCGGGAGGGAGCTGATCGCCAAGCAGAATCCGGTCGTCGTCGCCGA 779
consensus_5022#1      CGACTACAAGAGCGCCGGGAAGGAGCAGATCGCCAAGCAGAACCCGCTCGTCGTCGCCGA 546
consensus_5022#2      ------------------------------------------------------------
                                                                                  

consensus_5022#0      CAAGCTGGCCTTCAGGATTTGATCAAGAATCCTCAACCACTATCCATGAGGTCAAATCGA 839
consensus_5022#1      CAAGCTGGCCACCCGGATTTGAGCTC---TCCTCTCTCTCT-TCCATGGAATCCAACAGC 602
consensus_5022#2      ----------------------TCTTTTTTTTTTTTTTTTGGTTCATAAATAAAGATTAT 38
                                             *     *  *         * ***        *    

consensus_5022#0      AGTAGCCGATCA-AAGATCAATGATC-TGTTCTTCAATCTTGTGGGAAGTTGAAT--CCT 895
consensus_5022#1      AGT--CTGCAAA-ACCATCGACGAGCACAAGCAAACATTGAGTAGCAAGCTCAGTGATCT 659
consensus_5022#2      TGTCATTGGGAACATGTTTCTTCAGTGAAAACAAATACGAAATTACATGC-AAGTATTCA 97
                       **    *   * *   *     *       *    *     *   * *   * *   * 

consensus_5022#0      TGTTTGCAATGATCGATTTTCTGTGCTCAGCGCACAATTAATTTGATGTAATTTTCGTCA 955
consensus_5022#1      GTTCTGAAACATGTAAGATTGAATACTT-GCATGTAATTTAGTATTTGT---TTTCACTG 715
consensus_5022#2      ATCTTACATGTTTCAAAACAGATCACTGAGCTTGCTACTCTATGACCCCTTGTCTCGT-- 155
                          *  *       *         **  **     * *   *         * **    

consensus_5022#0      AAGAAAAGTTAGTTGTAGTTCGCTGTAACAGAGTCAGTTTAATTCAGTTGATGTATCTAT 1015
consensus_5022#1      AAGAAACAT--GTTCCCATTGACAATAATC--TTTA------------------------ 747
consensus_5022#2      ------------------------------------------------------------
                                                                                  

consensus_5022#0      TTGGATCGATTGATATGTGCAGAAGCAAAGTACAAGTCTTT 1056
consensus_5022#1      -----------------------------------------
consensus_5022#2      -----------------------------------------