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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5026#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1243 fasta sequence
[TTTATCTTTTCTCGAACGAAAAAAAAAAGCGATAAAAACCATCTCATCGAGGAAGAAAGCAACCCACGATAACCCTCTTCTTCTTCTACCCATCTCGCCGTCGCCGCCGCCGCCGCCGCCGCCGCCGTCGAATCGATCGAAGCCCAGCAGCGAGCGATGGGGCTGGACTACTACAAGGTGCTCGGCGTGGGCCGCGGCGCCACCGACGAGGAGCTCAAGAGATCCTACGACGTGCTCAGCGACAAGAACCGCTCGCCGCACGCCGACGACTCCCTCTTCAAGCAAGGCCGGCGCGGCGCCGCCGCCGACCACCTCCTCCTCCTCCTCCCACGGCGGCGGAGGAGGCTTCCGCTTCAGCCCGAGGAGCGCCGAGGAGATCTTCTCGGAGATGTTCGGGGGCGCATTCGGCGGCGCGGGGCCACGCGCCCCCGGCGCCGGGTTCCCGGGGTTCGGTGGGTCCCCCCGGGCAGGGGAGACGTCGGCGACGAAAGCTCCGGCGATCGAGCGGCAGCTGGCTTGCAGCCTTGAGGACCTCTACAGGGGCGCCACCAAGAAGATGAAGATCTCTAGGGATGTCCTCGACGCCACTGGGAAACCGACAAATCTGGAGGAGATCCTGACAATCGATATCAAGCCTGGATGGAAGAAGGGTACAAAGGTAACCTTTCCCAAGAAAGGCAATGAGAAGCCTAACATCATACCATCAGACCTAGTGTTTATAATAGAAGAGCGGTCGCACGCTAGATTCAAGCGAGACAAGGATGATCTTATTTACACGCATAGGATCTCGCTCGTGGAGGCTTTGACCGGTTGCACAGTCCAACTGACAACTCTGGATGGGCGGAATTTAACCGTTCCAGTGAAGTCCGTCATCAATCCTACTTCTGAAGAGGTTGTGAAGGGCGAAGGGATGCCAATCACAAAGGAACCGTCTAAGAAAGGGGATCTGAAGATCAGGTTTCAGATCAAGTTCCCCACCAATCTAACGTCTGACCAAAAGTCAGGGATCCAGCAACTTTTGCCTAAGCCTTAACTGGTAGTACAATATTGTGAACCTGTATTTAGTCGTTTGTTTTAGCAGTTGGGAATACATTGAGAGGGTTTGATCACAGTTGCTGAATGTACAATCACTGCTTCGGTGCAAGTATTGAAGAACATGTTTGCATTGGTATTTCCAACATTACTCCAATTGATTGCCAACTGCTAACAGAGTAGCAGCAGTTCATTCAAAAAAAAAAAAAAA]
[+] EMBL AK069823 [TTTATCTTTTCTCGAACGAAAAAAAAAAGCGATAAAAACCATCTCATCGAGGAAGAAAGCAACCCACGATAACCCTCTTCTTCTTCTACCCATCTCGCCGTCGCCGCCGCCGCCGCCGCCGCCGCCGTCGAATCGATCGAAGCCCAGCAGCGAGCGATGGGGCTGGACTACTACAAGGTGCTCGGCGTGGGCCGCGGCGCCACCGACGAGGAGCTCAAGAGATCCTACGACGTGCTCAGCGACAAGAACCGCTCGCCGCACGCCGACGACTCCCTCTTCAAGCAAGGCCGGCGCGGCGCCGCCGCCGACCACCTCCTCCTCCTCCTCCCACGGCGGCGGAGGAGGCTTCCGCTTCAGCCCGAGGAGCGCCGAGGAGATCTTCTCGGAGATGTTCGGGGGCGCATTCGGCGGCGCGGGGCCACGCGCCCCCGGCGCCGGGTTCCCGGGGTTCGGTGGGTCCCCCCGGGCAGGGGAGACGTCGGCGACGAAAGCTCCGGCGATCGAGCGGCAGCTGGCTTGCAGCCTTGAGGACCTCTACAGGGGCGCCACCAAGAAGATGAAGATCTCTAGGGATGTCCTCGACGCCACTGGGAAACCGACAAATCTGGAGGAGATCCTGACAATCGATATCAAGCCTGGATGGAAGAAGGGTACAAAGGTAACCTTTCCCAAGAAAGGCAATGAGAAGCCTAACATCATACCATCAGACCTAGTGTTTATAATAGAAGAGCGGTCGCACGCTAGATTCAAGCGAGACAAGGATGATCTTATTTACACGCATAGGATCTCGCTCGTGGAGGCTTTGACCGGTTGCACAGTCCAACTGACAACTCTGGATGGGCGGAATTTAACCGTTCCAGTGAAGTCCGTCATCAATCCTACTTCTGAAGAGGTTGTGAAGGGCGAAGGGATGCCAATCACAAAGGAACCGTCTAAGAAAGGGGATCTGAAGATCAGGTTTCAGATCAAGTTCCCCACCAATCTAACGTCTGACCAAAAGTCAGGGATCCAGCAACTTTTGCCTAAGCCTTAACTGGTAGTACAATATTGTGAACCTGTATTTAGTCGTTTGTTTTAGCAGTTGGGAATACATTGAGAGGGTTTGATCACAGTTGCTGAATGTACAATCACTGCTTCGGTGCAAGTATTGAAGAACATGTTTGCATTGGTATTTCCAA ]
[+] EMBL AU166740 [ TTTGACCGGTTGCACAGTCCAACTGACAACTCTGGATGGGCGGAATTTAACCGTTCCAGTGAAGTCCGTCATCAATCCTACTTNTGAAGAGGTTGTGAAGGGCGAAGGGATGCCAATCACAAAGGAACCGTNTAAGAAAGGGGATNTGAAGATCAGGTTTCAGATCAAGTTCCCCACCAATCTAACGTNTGACCAAAAGTCAGGGATCCAGCAACTTTTGCCTAAGCCTTAACTGGTAGTACAATATTGTGAACCTGTATTTAGTCGTTTG TTTAGCAGTTGGGAATACATTGAGAGGGTTTGATCACAGTTGCTGAATGTACAATCACTGCTTCGGTGCAAGTATTGAAGAACATGTTTGCATTGGTATTTCCAACATTACTCCAATTGATTGCCAACTGCTAACAGAGTAGCAGCAGTTCATTCAAAAAAAAAAAAAAA]
consensusID : consensus_5026#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 320 fasta sequence
[AGAGATCCTACCGCCGCCTCGCCATGAAGCACCACCCCGACAAGAACCGCTCGCCGCACGCCGACGACTCCCTCTTCAAGCAAGTNTCCGAGGCCTACGACGTGCTCAGCGACCCGCAGAAGCGCGCCATCTACGACCAGTTCGGCGAGGAAGGCCTCAAGGCCGNCGCGGCGCCGCCGCGAACCCACCTCCTCCTCCTCCTCCCACGGCGGCGGAGGAGGCTTCCGCTTCAGCCCGAGGAGCGCCGAGGAGATCTTCTCGGAGATGTTCGGGGGCGCATTCGGNGGCGCGGGGCCACGGCCCCGGGCCGGGTTCCCGGG]
[+] EMBL C26800 [AGAGATCCTACCGCCGCCTCGCCATGAAGCACCACCCCGACAAGAACCGCTCGCCGCACGCCGACGACTCCCTCTTCAAGCAAGTNTCCGAGGCCTACGACGTGCTCAGCGACCCGCAGAAGCGCGCCATCTACGACCAGTTCGGCGAGGAAGGCCTCAAGGCCGNCGCGGCGCCGCCGCGAACCCACCTCCTCCTCCTCCTCCCACGGCGGCGGAGGAGGCTTCCGCTTCAGCCCGAGGAGCGCCGAGGAGATCTTCTCGGAGATGTTCGGGGGCGCATTCGGNGGCGCGGGGCCACGGCCCCGGGCCGGGTTCCCGGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5026#0 TTTATCTTTTCTCGAACGAAAAAAAAAAGCGATAAAAACCATCTCATCGAGGAAGAAAGC 60
consensus_5026#1 ------------------------------------------------------------
consensus_5026#0 AACCCACGATAACCCTCTTCTTCTTCTACCCATCTCGCCGTCGCCGCCGCCGCCGCCGCC 120
consensus_5026#1 ------------------------------------------------------------
consensus_5026#0 GCCGCCGTCGAATCGATCGAAGCCCAGCAGCGAGCGATGGGGCTGGACTACTACAAGG-- 178
consensus_5026#1 -----------AGAGATCCTA--CCGCCGCCTCGCCATGAAGCACCACCCCGACAAGAAC 47
* **** * ** * * ** *** ** ** * *****
consensus_5026#0 TGCTCGGCGTGGGCCG-CGGCGCCACCGACGAGGAGCTCAAGAGATCCTACGACGTGCTC 237
consensus_5026#1 CGCTCGCCGCACGCCGACGACTCCCTCTTCAAGCAAGTNTCCGAGGCCTACGACGTGCTC 107
***** ** **** ** * ** * * ** * * **************
consensus_5026#0 AGCGACAAG-AACCGCTCGCCGCACGCCGACGACTCCCTCTTCAAG----CAAGGCCGGC 292
consensus_5026#1 AGCGACCCGCAGAAGCGCGCCATCTACGACCAGTTCGGCGAGGAAGGCCTCAAGGCCGNC 167
****** * * ** **** * * ** *** ******** *
consensus_5026#0 GCGGCGCCGCCGCCGACC-ACCTCCTCCTCCTCCTCCCACGGCGGCGGAGGAGGCTTCCG 351
consensus_5026#1 GCGGCGCCGCCGCGAACCCACCTCCTCCTCCTCCTCCCACGGCGGCGGAGGAGGCTTCCG 227
************* *** *****************************************
consensus_5026#0 CTTCAGCCCGAGGAGCGCCGAGGAGATCTTCTCGGAGATGTTCGGGGGCGCATTCGGCGG 411
consensus_5026#1 CTTCAGCCCGAGGAGCGCCGAGGAGATCTTCTCGGAGATGTTCGGGGGCGCATTCGGNGG 287
********************************************************* **
consensus_5026#0 CGCGGGGCCACGCGCCCCCGGCGCCGGGTTCCCGGGGTTCGGTGGGTCCCCCCGGGCAGG 471
consensus_5026#1 CGCGGGGCCACGG--CCCCGG-GCCGGGTTCCCGGG------------------------ 320
************ ****** **************
consensus_5026#0 GGAGACGTCGGCGACGAAAGCTCCGGCGATCGAGCGGCAGCTGGCTTGCAGCCTTGAGGA 531
consensus_5026#1 ------------------------------------------------------------
consensus_5026#0 CCTCTACAGGGGCGCCACCAAGAAGATGAAGATCTCTAGGGATGTCCTCGACGCCACTGG 591
consensus_5026#1 ------------------------------------------------------------
consensus_5026#0 GAAACCGACAAATCTGGAGGAGATCCTGACAATCGATATCAAGCCTGGATGGAAGAAGGG 651
consensus_5026#1 ------------------------------------------------------------
consensus_5026#0 TACAAAGGTAACCTTTCCCAAGAAAGGCAATGAGAAGCCTAACATCATACCATCAGACCT 711
consensus_5026#1 ------------------------------------------------------------
consensus_5026#0 AGTGTTTATAATAGAAGAGCGGTCGCACGCTAGATTCAAGCGAGACAAGGATGATCTTAT 771
consensus_5026#1 ------------------------------------------------------------
consensus_5026#0 TTACACGCATAGGATCTCGCTCGTGGAGGCTTTGACCGGTTGCACAGTCCAACTGACAAC 831
consensus_5026#1 ------------------------------------------------------------
consensus_5026#0 TCTGGATGGGCGGAATTTAACCGTTCCAGTGAAGTCCGTCATCAATCCTACTTCTGAAGA 891
consensus_5026#1 ------------------------------------------------------------
consensus_5026#0 GGTTGTGAAGGGCGAAGGGATGCCAATCACAAAGGAACCGTCTAAGAAAGGGGATCTGAA 951
consensus_5026#1 ------------------------------------------------------------
consensus_5026#0 GATCAGGTTTCAGATCAAGTTCCCCACCAATCTAACGTCTGACCAAAAGTCAGGGATCCA 1011
consensus_5026#1 ------------------------------------------------------------
consensus_5026#0 GCAACTTTTGCCTAAGCCTTAACTGGTAGTACAATATTGTGAACCTGTATTTAGTCGTTT 1071
consensus_5026#1 ------------------------------------------------------------
consensus_5026#0 GTTTTAGCAGTTGGGAATACATTGAGAGGGTTTGATCACAGTTGCTGAATGTACAATCAC 1131
consensus_5026#1 ------------------------------------------------------------
consensus_5026#0 TGCTTCGGTGCAAGTATTGAAGAACATGTTTGCATTGGTATTTCCAACATTACTCCAATT 1191
consensus_5026#1 ------------------------------------------------------------
consensus_5026#0 GATTGCCAACTGCTAACAGAGTAGCAGCAGTTCATTCAAAAAAAAAAAAAAA 1243
consensus_5026#1 ----------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||