These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5026#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1243 fasta sequence [TTTATCTTTTCTCGAACGAAAAAAAAAAGCGATAAAAACCATCTCATCGAGGAAGAAAGCAACCCACGATAACCCTCTTCTTCTTCTACCCATCTCGCCGTCGCCGCCGCCGCCGCCGCCGCCGCCGTCGAATCGATCGAAGCCCAGCAGCGAGCGATGGGGCTGGACTACTACAAGGTGCTCGGCGTGGGCCGCGGCGCCACCGACGAGGAGCTCAAGAGATCCTACGACGTGCTCAGCGACAAGAACCGCTCGCCGCACGCCGACGACTCCCTCTTCAAGCAAGGCCGGCGCGGCGCCGCCGCCGACCACCTCCTCCTCCTCCTCCCACGGCGGCGGAGGAGGCTTCCGCTTCAGCCCGAGGAGCGCCGAGGAGATCTTCTCGGAGATGTTCGGGGGCGCATTCGGCGGCGCGGGGCCACGCGCCCCCGGCGCCGGGTTCCCGGGGTTCGGTGGGTCCCCCCGGGCAGGGGAGACGTCGGCGACGAAAGCTCCGGCGATCGAGCGGCAGCTGGCTTGCAGCCTTGAGGACCTCTACAGGGGCGCCACCAAGAAGATGAAGATCTCTAGGGATGTCCTCGACGCCACTGGGAAACCGACAAATCTGGAGGAGATCCTGACAATCGATATCAAGCCTGGATGGAAGAAGGGTACAAAGGTAACCTTTCCCAAGAAAGGCAATGAGAAGCCTAACATCATACCATCAGACCTAGTGTTTATAATAGAAGAGCGGTCGCACGCTAGATTCAAGCGAGACAAGGATGATCTTATTTACACGCATAGGATCTCGCTCGTGGAGGCTTTGACCGGTTGCACAGTCCAACTGACAACTCTGGATGGGCGGAATTTAACCGTTCCAGTGAAGTCCGTCATCAATCCTACTTCTGAAGAGGTTGTGAAGGGCGAAGGGATGCCAATCACAAAGGAACCGTCTAAGAAAGGGGATCTGAAGATCAGGTTTCAGATCAAGTTCCCCACCAATCTAACGTCTGACCAAAAGTCAGGGATCCAGCAACTTTTGCCTAAGCCTTAACTGGTAGTACAATATTGTGAACCTGTATTTAGTCGTTTGTTTTAGCAGTTGGGAATACATTGAGAGGGTTTGATCACAGTTGCTGAATGTACAATCACTGCTTCGGTGCAAGTATTGAAGAACATGTTTGCATTGGTATTTCCAACATTACTCCAATTGATTGCCAACTGCTAACAGAGTAGCAGCAGTTCATTCAAAAAAAAAAAAAAA] [+] EMBL AK069823 [TTTATCTTTTCTCGAACGAAAAAAAAAAGCGATAAAAACCATCTCATCGAGGAAGAAAGCAACCCACGATAACCCTCTTCTTCTTCTACCCATCTCGCCGTCGCCGCCGCCGCCGCCGCCGCCGCCGTCGAATCGATCGAAGCCCAGCAGCGAGCGATGGGGCTGGACTACTACAAGGTGCTCGGCGTGGGCCGCGGCGCCACCGACGAGGAGCTCAAGAGATCCTACGACGTGCTCAGCGACAAGAACCGCTCGCCGCACGCCGACGACTCCCTCTTCAAGCAAGGCCGGCGCGGCGCCGCCGCCGACCACCTCCTCCTCCTCCTCCCACGGCGGCGGAGGAGGCTTCCGCTTCAGCCCGAGGAGCGCCGAGGAGATCTTCTCGGAGATGTTCGGGGGCGCATTCGGCGGCGCGGGGCCACGCGCCCCCGGCGCCGGGTTCCCGGGGTTCGGTGGGTCCCCCCGGGCAGGGGAGACGTCGGCGACGAAAGCTCCGGCGATCGAGCGGCAGCTGGCTTGCAGCCTTGAGGACCTCTACAGGGGCGCCACCAAGAAGATGAAGATCTCTAGGGATGTCCTCGACGCCACTGGGAAACCGACAAATCTGGAGGAGATCCTGACAATCGATATCAAGCCTGGATGGAAGAAGGGTACAAAGGTAACCTTTCCCAAGAAAGGCAATGAGAAGCCTAACATCATACCATCAGACCTAGTGTTTATAATAGAAGAGCGGTCGCACGCTAGATTCAAGCGAGACAAGGATGATCTTATTTACACGCATAGGATCTCGCTCGTGGAGGCTTTGACCGGTTGCACAGTCCAACTGACAACTCTGGATGGGCGGAATTTAACCGTTCCAGTGAAGTCCGTCATCAATCCTACTTCTGAAGAGGTTGTGAAGGGCGAAGGGATGCCAATCACAAAGGAACCGTCTAAGAAAGGGGATCTGAAGATCAGGTTTCAGATCAAGTTCCCCACCAATCTAACGTCTGACCAAAAGTCAGGGATCCAGCAACTTTTGCCTAAGCCTTAACTGGTAGTACAATATTGTGAACCTGTATTTAGTCGTTTGTTTTAGCAGTTGGGAATACATTGAGAGGGTTTGATCACAGTTGCTGAATGTACAATCACTGCTTCGGTGCAAGTATTGAAGAACATGTTTGCATTGGTATTTCCAA ] [+] EMBL AU166740 [ TTTGACCGGTTGCACAGTCCAACTGACAACTCTGGATGGGCGGAATTTAACCGTTCCAGTGAAGTCCGTCATCAATCCTACTTNTGAAGAGGTTGTGAAGGGCGAAGGGATGCCAATCACAAAGGAACCGTNTAAGAAAGGGGATNTGAAGATCAGGTTTCAGATCAAGTTCCCCACCAATCTAACGTNTGACCAAAAGTCAGGGATCCAGCAACTTTTGCCTAAGCCTTAACTGGTAGTACAATATTGTGAACCTGTATTTAGTCGTTTG TTTAGCAGTTGGGAATACATTGAGAGGGTTTGATCACAGTTGCTGAATGTACAATCACTGCTTCGGTGCAAGTATTGAAGAACATGTTTGCATTGGTATTTCCAACATTACTCCAATTGATTGCCAACTGCTAACAGAGTAGCAGCAGTTCATTCAAAAAAAAAAAAAAA] consensusID : consensus_5026#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 320 fasta sequence [AGAGATCCTACCGCCGCCTCGCCATGAAGCACCACCCCGACAAGAACCGCTCGCCGCACGCCGACGACTCCCTCTTCAAGCAAGTNTCCGAGGCCTACGACGTGCTCAGCGACCCGCAGAAGCGCGCCATCTACGACCAGTTCGGCGAGGAAGGCCTCAAGGCCGNCGCGGCGCCGCCGCGAACCCACCTCCTCCTCCTCCTCCCACGGCGGCGGAGGAGGCTTCCGCTTCAGCCCGAGGAGCGCCGAGGAGATCTTCTCGGAGATGTTCGGGGGCGCATTCGGNGGCGCGGGGCCACGGCCCCGGGCCGGGTTCCCGGG] [+] EMBL C26800 [AGAGATCCTACCGCCGCCTCGCCATGAAGCACCACCCCGACAAGAACCGCTCGCCGCACGCCGACGACTCCCTCTTCAAGCAAGTNTCCGAGGCCTACGACGTGCTCAGCGACCCGCAGAAGCGCGCCATCTACGACCAGTTCGGCGAGGAAGGCCTCAAGGCCGNCGCGGCGCCGCCGCGAACCCACCTCCTCCTCCTCCTCCCACGGCGGCGGAGGAGGCTTCCGCTTCAGCCCGAGGAGCGCCGAGGAGATCTTCTCGGAGATGTTCGGGGGCGCATTCGGNGGCGCGGGGCCACGGCCCCGGGCCGGGTTCCCGGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5026#0 TTTATCTTTTCTCGAACGAAAAAAAAAAGCGATAAAAACCATCTCATCGAGGAAGAAAGC 60 consensus_5026#1 ------------------------------------------------------------ consensus_5026#0 AACCCACGATAACCCTCTTCTTCTTCTACCCATCTCGCCGTCGCCGCCGCCGCCGCCGCC 120 consensus_5026#1 ------------------------------------------------------------ consensus_5026#0 GCCGCCGTCGAATCGATCGAAGCCCAGCAGCGAGCGATGGGGCTGGACTACTACAAGG-- 178 consensus_5026#1 -----------AGAGATCCTA--CCGCCGCCTCGCCATGAAGCACCACCCCGACAAGAAC 47 * **** * ** * * ** *** ** ** * ***** consensus_5026#0 TGCTCGGCGTGGGCCG-CGGCGCCACCGACGAGGAGCTCAAGAGATCCTACGACGTGCTC 237 consensus_5026#1 CGCTCGCCGCACGCCGACGACTCCCTCTTCAAGCAAGTNTCCGAGGCCTACGACGTGCTC 107 ***** ** **** ** * ** * * ** * * ************** consensus_5026#0 AGCGACAAG-AACCGCTCGCCGCACGCCGACGACTCCCTCTTCAAG----CAAGGCCGGC 292 consensus_5026#1 AGCGACCCGCAGAAGCGCGCCATCTACGACCAGTTCGGCGAGGAAGGCCTCAAGGCCGNC 167 ****** * * ** **** * * ** *** ******** * consensus_5026#0 GCGGCGCCGCCGCCGACC-ACCTCCTCCTCCTCCTCCCACGGCGGCGGAGGAGGCTTCCG 351 consensus_5026#1 GCGGCGCCGCCGCGAACCCACCTCCTCCTCCTCCTCCCACGGCGGCGGAGGAGGCTTCCG 227 ************* *** ***************************************** consensus_5026#0 CTTCAGCCCGAGGAGCGCCGAGGAGATCTTCTCGGAGATGTTCGGGGGCGCATTCGGCGG 411 consensus_5026#1 CTTCAGCCCGAGGAGCGCCGAGGAGATCTTCTCGGAGATGTTCGGGGGCGCATTCGGNGG 287 ********************************************************* ** consensus_5026#0 CGCGGGGCCACGCGCCCCCGGCGCCGGGTTCCCGGGGTTCGGTGGGTCCCCCCGGGCAGG 471 consensus_5026#1 CGCGGGGCCACGG--CCCCGG-GCCGGGTTCCCGGG------------------------ 320 ************ ****** ************** consensus_5026#0 GGAGACGTCGGCGACGAAAGCTCCGGCGATCGAGCGGCAGCTGGCTTGCAGCCTTGAGGA 531 consensus_5026#1 ------------------------------------------------------------ consensus_5026#0 CCTCTACAGGGGCGCCACCAAGAAGATGAAGATCTCTAGGGATGTCCTCGACGCCACTGG 591 consensus_5026#1 ------------------------------------------------------------ consensus_5026#0 GAAACCGACAAATCTGGAGGAGATCCTGACAATCGATATCAAGCCTGGATGGAAGAAGGG 651 consensus_5026#1 ------------------------------------------------------------ consensus_5026#0 TACAAAGGTAACCTTTCCCAAGAAAGGCAATGAGAAGCCTAACATCATACCATCAGACCT 711 consensus_5026#1 ------------------------------------------------------------ consensus_5026#0 AGTGTTTATAATAGAAGAGCGGTCGCACGCTAGATTCAAGCGAGACAAGGATGATCTTAT 771 consensus_5026#1 ------------------------------------------------------------ consensus_5026#0 TTACACGCATAGGATCTCGCTCGTGGAGGCTTTGACCGGTTGCACAGTCCAACTGACAAC 831 consensus_5026#1 ------------------------------------------------------------ consensus_5026#0 TCTGGATGGGCGGAATTTAACCGTTCCAGTGAAGTCCGTCATCAATCCTACTTCTGAAGA 891 consensus_5026#1 ------------------------------------------------------------ consensus_5026#0 GGTTGTGAAGGGCGAAGGGATGCCAATCACAAAGGAACCGTCTAAGAAAGGGGATCTGAA 951 consensus_5026#1 ------------------------------------------------------------ consensus_5026#0 GATCAGGTTTCAGATCAAGTTCCCCACCAATCTAACGTCTGACCAAAAGTCAGGGATCCA 1011 consensus_5026#1 ------------------------------------------------------------ consensus_5026#0 GCAACTTTTGCCTAAGCCTTAACTGGTAGTACAATATTGTGAACCTGTATTTAGTCGTTT 1071 consensus_5026#1 ------------------------------------------------------------ consensus_5026#0 GTTTTAGCAGTTGGGAATACATTGAGAGGGTTTGATCACAGTTGCTGAATGTACAATCAC 1131 consensus_5026#1 ------------------------------------------------------------ consensus_5026#0 TGCTTCGGTGCAAGTATTGAAGAACATGTTTGCATTGGTATTTCCAACATTACTCCAATT 1191 consensus_5026#1 ------------------------------------------------------------ consensus_5026#0 GATTGCCAACTGCTAACAGAGTAGCAGCAGTTCATTCAAAAAAAAAAAAAAA 1243 consensus_5026#1 ---------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||