cluster # 5027

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Oryza sativa
cluster # 5027 cluster # 5027 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5027#0 length = 453 sequences # 2

consensus_5027#1 length = 427 sequences # 1

consensusID : consensus_5027#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 453
fasta sequence

                              [GTACACAGTCACAGACGCAAACCCCCGCCGACCTCGCCACCCTCAAGAACTCCATTCGCAGC-GCCGCCCACACCCCGGAAGCCCTCGCCGACCTCTTCATCTCCGGCCTCTCCCACCCGGCCTTCCTCGCCGACCGCCCCATCTTTACCCTCTCCGTCCACCGCCTCGCCTCTGCCGGCCGCCGCGACCTCGTCG-CTCCATCCTCTCCTCCTCCCTCACCTCCCTCCCCGCGGCCCACCCCTCCGAGGGCTTCCTCATCCGCCTCATCTTCCTCTACTTCGGCGGCGGAATGCCCGACCANTTCCTCTCCACCTTCCGCATCGTCACCCCGCCCTCCGACCGCGCCCTCTCCGNTCTCCTCTCCGCCTACCACGACAACCGCCTCTACGACCGCGCCATCCAAGCCTTCCGCACTCTCCCCGCCGAGCTCGGCATCAAGCCCAGCGTCGTCTC]

[+] EMBL C27087               [GTACACAGTCACAGACGCAAACCCCCGCCGACCTCGCCACCCTCAAGAACTCCATTCGCAGC GCCGCCCACACCCCGGAAGCCCTCGCCGACCTCTTCATCTCCGGCCTCTCCCACCCGGCCTTCCTCGCCGACCGCCCCATCTTTACCCTCTCCGTCCACCGCCTCGCCTCTGCCGGCCGCCGCGACCTCGTCG CTCCATCCTCTCCTCCTCCCTCACCTCCCTCCCCGCGGCCCACCCCTCCGAGGGCTTCCTCATCCGCCTCATCTTCCTCTACTTCGGCGGCGGAATGCCCGACCANTTCC                                                                                                                                                    ]
[+] EMBL AU166746             [                             GACCTCGCCACCCTCAAGAACTCCATTCGCAGCAGCCGCCCACACCCCGGAAGCCCTCGCCGACCTCTTCATCTCCGGCCTCTCCCACCCGGCCTTCCTCGCCGACCGCCCCATCTTTACCCTCTCCGTCCACCGCCTCGCCTCTGCCGGCCGCCGCGACCTCGTCGCCTCCATCCTCTCCTCCTCCCTCACCTCCCTCCCCGCGCCCCACCCCTCCGAGGGCTTCCTCATCCGCCTCATCTCCCTCTACTCCGCCGCCGGCATGCCCGACCACTCCCTCTCCACCTTCCGCATCGTCACCCCGCCCTCCGACCGCGCCCTCTCCGNTCTCCTCTCCGCCTACCACGACAACCGCCTCTACGACCGCGCCATCCAAGCCTTCCGCACTCTCCCCGCCGAGCTCGGCATCAAGCCCAGCGTCGTCTC]




>consensus_5027#0
GTACACAGTCACAGACGCAAACCCCCGCCGACCTCGCCACCCTCAAGAACTCCATTCGCA
GCGCCGCCCACACCCCGGAAGCCCTCGCCGACCTCTTCATCTCCGGCCTCTCCCACCCGG
CCTTCCTCGCCGACCGCCCCATCTTTACCCTCTCCGTCCACCGCCTCGCCTCTGCCGGCC
GCCGCGACCTCGTCGCTCCATCCTCTCCTCCTCCCTCACCTCCCTCCCCGCGGCCCACCC
CTCCGAGGGCTTCCTCATCCGCCTCATCTTCCTCTACTTCGGCGGCGGAATGCCCGACCA
NTTCCTCTCCACCTTCCGCATCGTCACCCCGCCCTCCGACCGCGCCCTCTCCGNTCTCCT
CTCCGCCTACCACGACAACCGCCTCTACGACCGCGCCATCCAAGCCTTCCGCACTCTCCC
CGCCGAGCTCGGCATCAAGCCCAGCGTCGTCTC

consensusID : consensus_5027#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 427
fasta sequence

                              [GCCGCCGCCCTTCGCCGGAGCCTCGCTGCTGGCCCCGCCCCGGCCCTCCTCCTCCGCCGCCAACTCCTCATGCGCTTCCTCTCCACCCAGACACAGTCACAGACGCAAACCCCCGCCGACCTCGCCACCCTCAAGAACTCCATTCGCAGCGCCGCCCACACCCCGGAAGCCCTCGCCGACCTCTTCATCTCCGGCCTTTNCCACCCGGCCTTTCTCGCCGACCGGCCCATCTTTACCCTTTTCGTCACCGGCTNGGCTTTGGCGGGCGGCGGGACCTTGTNGGCTTCATTCTTTTCTTCTTCCTTAACTTCCTTCCCGGGGCCCAACCCTTCGAGGGGTTTCTTATTCGGCTTATTTTCCTTTANTTCGGCGGCGGGATGGCCGAACANTTCCTTTTCAACNTTCGGATTGGGAACCCGGCCTTCGA]

[+] EMBL AU181623             [GCCGCCGCCCTTCGCCGGAGCCTCGCTGCTGGCCCCGCCCCGGCCCTCCTCCTCCGCCGCCAACTCCTCATGCGCTTCCTCTCCACCCAGACACAGTCACAGACGCAAACCCCCGCCGACCTCGCCACCCTCAAGAACTCCATTCGCAGCGCCGCCCACACCCCGGAAGCCCTCGCCGACCTCTTCATCTCCGGCCTTTNCCACCCGGCCTTTCTCGCCGACCGGCCCATCTTTACCCTTTTCGTCACCGGCTNGGCTTTGGCGGGCGGCGGGACCTTGTNGGCTTCATTCTTTTCTTCTTCCTTAACTTCCTTCCCGGGGCCCAACCCTTCGAGGGGTTTCTTATTCGGCTTATTTTCCTTTANTTCGGCGGCGGGATGGCCGAACANTTCCTTTTCAACNTTCGGATTGGGAACCCGGCCTTCGA]




>consensus_5027#1
GCCGCCGCCCTTCGCCGGAGCCTCGCTGCTGGCCCCGCCCCGGCCCTCCTCCTCCGCCGC
CAACTCCTCATGCGCTTCCTCTCCACCCAGACACAGTCACAGACGCAAACCCCCGCCGAC
CTCGCCACCCTCAAGAACTCCATTCGCAGCGCCGCCCACACCCCGGAAGCCCTCGCCGAC
CTCTTCATCTCCGGCCTTTNCCACCCGGCCTTTCTCGCCGACCGGCCCATCTTTACCCTT
TTCGTCACCGGCTNGGCTTTGGCGGGCGGCGGGACCTTGTNGGCTTCATTCTTTTCTTCT
TCCTTAACTTCCTTCCCGGGGCCCAACCCTTCGAGGGGTTTCTTATTCGGCTTATTTTCC
TTTANTTCGGCGGCGGGATGGCCGAACANTTCCTTTTCAACNTTCGGATTGGGAACCCGG
CCTTCGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5027#0      ------------------------------------------------------------
consensus_5027#1      GCCGCCGCCCTTCGCCGGAGCCTCGCTGCTGGCCCCGCCCCGGCCCTCCTCCTCCGCCGC 60
                                                                                  

consensus_5027#0      ----------------------------GTACACAGTCACAGACGCAAACCCCCGCCGAC 32
consensus_5027#1      CAACTCCTCATGCGCTTCCTCTCCACCCAGACACAGTCACAGACGCAAACCCCCGCCGAC 120
                                                    ******************************

consensus_5027#0      CTCGCCACCCTCAAGAACTCCATTCGCAGCGCCGCCCACACCCCGGAAGCCCTCGCCGAC 92
consensus_5027#1      CTCGCCACCCTCAAGAACTCCATTCGCAGCGCCGCCCACACCCCGGAAGCCCTCGCCGAC 180
                      ************************************************************

consensus_5027#0      CTCTTCATCTCCGGCCTCTCCCACCCGGCCTTCCTCGCCGACCGCCCCATCTTTACCCTC 152
consensus_5027#1      CTCTTCATCTCCGGCCTTTNCCACCCGGCCTTTCTCGCCGACCGGCCCATCTTTACCCTT 240
                      ***************** * ************ *********** ************** 

consensus_5027#0      TCCGTCCACCGCCTCGCCTCTGCCGGCCGCCGCGACCTCGTCG-CTCCATCCTCTCCTCC 211
consensus_5027#1      TTCGTC-ACCGGCTNGGCTTTGGCGGGCGGCGGGACCTTGTNGGCTTCATTCTTTTCTTC 299
                      * **** **** ** * ** ** *** ** ** ***** ** * ** *** ** * ** *

consensus_5027#0      TCCCTCACCTCCCTCCCCGCGGCCCACCCCTCCGAGGGCTTCCTCATCCGCCTCATCTTC 271
consensus_5027#1      TTCCTTAACTTCCTTCCCGGGGCCCAACCCTTCGAGGGGTTTCTTATTCGGCTTATTTTC 359
                      * *** * ** *** **** ****** **** ****** ** ** ** ** ** ** ***

consensus_5027#0      CTCTACTTCGGCGGCGGAATGCCCGACCANTTCCTCTCCACCTTCCGCATCGTCACCCCG 331
consensus_5027#1      CTTTANTTCGGCGGCGGGATGGCCGAACANTTCCTTTTCAACNTTCGGATTGGGAACCCG 419
                      ** ** *********** *** **** ******** * ** * * ** ** *  * ****

consensus_5027#0      CCCTCCGACCGCGCCCTCTCCGNTCTCCTCTCCGCCTACCACGACAACCGCCTCTACGAC 391
consensus_5027#1      GCCTTCGA---------------------------------------------------- 427
                       *** ***                                                    

consensus_5027#0      CGCGCCATCCAAGCCTTCCGCACTCTCCCCGCCGAGCTCGGCATCAAGCCCAGCGTCGTC 451
consensus_5027#1      ------------------------------------------------------------
                                                                                  

consensus_5027#0      TC 453
consensus_5027#1      --