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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5028#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1010 fasta sequence
[TAGCTACCCACCCCCCACCCTACCTCTCCTCCGCCACCCGTCGCCGGCCGGCATCTCGCTCGGAGCCAGCGCGCCGCGGCGGCCGGAGCCCGGAGGGACAACGCAACGATCTCTCTCTAGCTAGAGCTAGAGCTATAGCTTAGCTCAGCTAATTATAATACATAGCTAGGAAGAATTAACAATTAATGGGGAAGCGCAGTGCGCCCCGGTACCCCGACGACGGCGGCGGCGGCGGCGGCGGGATTTGCTGCGTGCTGTGCTGGTGCTGCTGCTTCCTGTTCCTGATCGTCGCGGCGCTCGCCGGCGCGGCGGCGTACGCCCTGTTCCTGTACAAGCCCAAGGCGCCGTCCTACTCGGTGAGCAACATGTCGGTGTCGCAGTTCGACTTCAACTCCAACGACCTGACGCTCTACACCAAGCTGGTGGCCACCGTGCGGGCCGAGAACCCCAACGAGATGATCGGCATCATCTACGGCGACGGCTCCCGAACGGTCGTCTCCTACCGCGGCACGCCGCTGTGCTCCGGCCACCTCCCCACCTTCTACCAGGGGTTCAAGAACGTGACGGTGATGGAGATCTCCATGGAAGGGAGGCACGGCTTCGGGTCGGGGCTGCAGAGCGCGCTGGAGGAGAGCGAGAAGGAAGGGAACGTGCCGCTCGACGTGTTCGTCAGCGTGCCCGTGTCGCTGCGGTTCGGCTCGTTCGACGTCCGGGAGGTGAGGGTCAACGTGCACTGCGCGCTCGTCGTCGACAGCATCTCACCCAAGAAGAAGCCCACCATCAAGTCCGCCACCTACCAGGGCAACGTAGAGTTCTGATCCATTGCATGCATCGAACATCAATGCCTTCATTAATTTCATTTAATTGTTTGTTTTAATTTGTTATTAACTTTGCTGTTCAGTGGAGTTGGGGAGAAAGTATGTTTGTGATGTAAACACTGTAGTAAGAAATGGTTCCAAACTAAAATTCCTTTGGTTGAAGTTATATGCAGAATGCAGAGACATCTTTTG]
[+] EMBL AK070630 [TAGCTACCCACCCCCCACCCTACCTCTCCTCCGCCACCCGTCGCCGGCCGGCATCTCGCTCGGAGCCAGCGCGCCGCGGCGGCCGGAGCCCGGAGGGACAACGCAACGATCTCTCTCTAGCTAGAGCTAGAGCTATAGCTTAGCTCAGCTAATTATAATACATAGCTAGGAAGAATTAACAATTAATGGGGAAGCGCAGTGCGCCCCGGTACCCCGACGACGGCGGCGGCGGCGGCGGCGGGATTTGCTGCGTGCTGTGCTGGTGCTGCTGCTTCCTGTTCCTGATCGTCGCGGCGCTCGCCGGCGCGGCGGCGTACGCCCTGTTCCTGTACAAGCCCAAGGCGCCGTCCTACTCGGTGAGCAACATGTCGGTGTCGCAGTTCGACTTCAACTCCAACGACCTGACGCTCTACACCAAGCTGGTGGCCACCGTGCGGGCCGAGAACCCCAACGAGATGATCGGCATCATCTACGGCGACGGCTCCCGAACGGTCGTCTCCTACCGCGGCACGCCGCTGTGCTCCGGCCACCTCCCCACCTTCTACCAGGGGTTCAAGAACGTGACGGTGATGGAGATCTCCATGGAAGGGAGGCACGGCTTCGGGTCGGGGCTGCAGAGCGCGCTGGAGGAGAGCGAGAAGGAAGGGAACGTGCCGCTCGACGTGTTCGTCAGCGTGCCCGTGTCGCTGCGGTTCGGCTCGTTCGACGTCCGGGAGGTGAGGGTCAACGTGCACTGCGCGCTCGTCGTCGACAGCATCTCACCCAAGAAGAAGCCCACCATCAAGTCCGCCACCTACCAGGGCAACGTAGAGTTCTGATCCATTGCATGCATCGAACATCAATGCCTTCATTAATTTCATTTAATTGTTTGTTTTAATTTGTTATTAACTTTGCTGTTCAGTGGAGTTGGGGAGAAAGTATGTTTGTGATGTAAACACTGTAGTAAGAAATGGTTCCAAACTAAAATTCCTTTGGTTGAAGTTATATGCAGAATGCAGAGACA ]
[+] EMBL AU069847 [ GCATCGAACATCAATGCCTTCATTAATTTCATTTAATTGTTTGTTTTAATTTGTTATTAACTTTGCTGTTCAGTGGAGTTGGGGAGAAAGTATGTTTGTGATGTAAACACTGTAGTAAGAAATGGTTCCAAACTAAAATTCCTTTGGTTGAAGTTATATGCAGAATGCAGAGACATCTTTTG]
consensusID : consensus_5028#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 881 fasta sequence
[TCTCTCTAGCTAGCTAGCTCGAGCTAGGCCCTCTCTCTCCCATGGCGTACGACGGGGGCTCGGGGCCGTCCAAGCCTCCGCCGCCGCCGCGGTACGTGATGCTCACGGAGGAGTACGGCTCCAGCTCGCTGGCCACGGTCCCGCCTGGCGCCAGCCGCAACATGCCCCGGCACCGCATCACGGACGGTGGCAGCCTGCGCGGCTGCCTCTGCTGGTGCTGCTGCTTCCTCCTCCTCCTCGTCGTGGCGGTGGGGCGACGTCGGCGTACCTCCTGTACGCGTGCAGGCCCAAGGCCCCGTCCTACTCCGTGTCCGACATGTCCGTGGCGCGGTTCGACGTGAGCTCCTCCGACCTCACCGTGTACGCCAAGCTGGTGGCGTCCGTCCGCGCGGAGAACCCCAACGACATGGTCGGGATCGGCTACGGCGCCGGGTCGCGGGCGGCGGTGTCGTACCGCGGCACGACGCTGTGCTCGGGGCGGCTGCCGGCGTTCTACCAGGGCCACCGGAACACGACGGTGGTGAGGGTGGCCATGGAGGGGCGGCACGGCTTCGGGCCGGGGCTGCAGGGCGCGCTGGAGGAGAGCGAGGAGGCCGACAACGTGCCGCTCGACGTGTACGTCAGCGCGCCGGTGACGCTCCGGCTGGGCGACGTCGACCTCCGGGAGGTGACGGTCAACGTGCACTGCGCGCTCGTCGTCGACGGCCTCTCGCCCAAGAAGAAGCCCGCTATCAAGTCCGCCGAATACAGGGTCAACGTAGAGTTTTAATTCATCAGGAATTCAGGATGTATTGAAATGACCATGATTACTTGTCTAATCGAATTTCTTAATGTAGCTATAGCTTGTAATTAATTAAGTCTGTAACTAATACTAAATGTTA]
[+] EMBL AK107845 [TCTCTCTAGCTAGCTAGCTCGAGCTAGGCCCTCTCTCTCCCATGGCGTACGACGGGGGCTCGGGGCCGTCCAAGCCTCCGCCGCCGCCGCGGTACGTGATGCTCACGGAGGAGTACGGCTCCAGCTCGCTGGCCACGGTCCCGCCTGGCGCCAGCCGCAACATGCCCCGGCACCGCATCACGGACGGTGGCAGCCTGCGCGGCTGCCTCTGCTGGTGCTGCTGCTTCCTCCTCCTCCTCGTCGTGGCGGTGGGGCGACGTCGGCGTACCTCCTGTACGCGTGCAGGCCCAAGGCCCCGTCCTACTCCGTGTCCGACATGTCCGTGGCGCGGTTCGACGTGAGCTCCTCCGACCTCACCGTGTACGCCAAGCTGGTGGCGTCCGTCCGCGCGGAGAACCCCAACGACATGGTCGGGATCGGCTACGGCGCCGGGTCGCGGGCGGCGGTGTCGTACCGCGGCACGACGCTGTGCTCGGGGCGGCTGCCGGCGTTCTACCAGGGCCACCGGAACACGACGGTGGTGAGGGTGGCCATGGAGGGGCGGCACGGCTTCGGGCCGGGGCTGCAGGGCGCGCTGGAGGAGAGCGAGGAGGCCGACAACGTGCCGCTCGACGTGTACGTCAGCGCGCCGGTGACGCTCCGGCTGGGCGACGTCGACCTCCGGGAGGTGACGGTCAACGTGCACTGCGCGCTCGTCGTCGACGGCCTCTCGCCCAAGAAGAAGCCCGCTATCAAGTCCGCCGAATACAGGGTCAACGTAGAGTTTTAATTCATCAGGAATTCAGGATGTATTGAAATGACCATGATTACTTGTCTAATCGAATTTCTTAATGTAGCTATAGCTTGTAATTAATTAAGTCTGTAACTAATACTAAATGTTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5028#0 TAGCTACCCACCCCCCACCCTACCTCTCCTCCGCCACCCGTCGCCGGCCGGCATCTCGCT 60
consensus_5028#1 ------------------------TCTCTCTAGCTAGCTAGCTCGAGCTAGGCCCTCTCT 36
**** ** * * * * ** * *** **
consensus_5028#0 CGGAGCCAGCGCGCCGCGGCGGCCGGAGCCCGGAGGGACAACGCAACGATCTCTCTCTAG 120
consensus_5028#1 CTCCCATGGCGTACGACGGGGGCTCGGGGCCGTCCAAGCCTC-CGCCGCCGCCGCGGTAC 95
* *** * *** *** * * *** * * * ** * * **
consensus_5028#0 CTAGAGCTAGAGCTATAGCTTAGCTCAGCTAATTATAATACATAGCTAGGAAGAATTAAC 180
consensus_5028#1 GTGATGCTCACGGAGGAGTACGGCTC------------CAGCTCGCTGGCCACGGTC--C 141
* *** * ** **** * * *** * * * *
consensus_5028#0 AATTAATGGGGAAGCGCAGTGCGCCCCGGTACCCCGACGACGGCGGCGGCGGCGGCGGCG 240
consensus_5028#1 CGCCTGGCGCCAGCCGCAACATGCCCCGGCACCGCATCACGGACGGTGGCAGC--CTGCG 199
* * **** ******* *** * * * *** *** ** * ***
consensus_5028#0 GGATTTGCTGCGTGCTGTGCTGGTGCTGCTGCTTCCTGTTCCTGATCGTCGCGGCGCTCG 300
consensus_5028#1 CG----GCTGC---CTCTGCTGGTGCTGCTGCTTCCTCCTCCTCCTCGTCGTGGCGGTGG 252
* ***** ** ******************** **** ****** **** * *
consensus_5028#0 CCGGCG-CGGCGGCGTACGCCCTGTTCCTGTACAAGCCCAAGGCGCCGTCCTACTCGGTG 359
consensus_5028#1 --GGCGACGTCGGCGTACCTCCTGTACGCGTGCAGGCCCAAGGCCCCGTCCTACTCCGTG 310
**** ** ******** ***** * ** ** ********* *********** ***
consensus_5028#0 AGCAACATGTCGGTGTCGCAGTTCGACTTCAACTCCAACGACCTGACGCTCTACACCAAG 419
consensus_5028#1 TCCGACATGTCCGTGGCGCGGTTCGACGTGAGCTCCTCCGACCTCACCGTGTACGCCAAG 370
* ******* *** *** ******* * * **** ****** ** * *** *****
consensus_5028#0 CTGGTGGCCACCGTGCGGGCCGAGAACCCCAACGAGATGATCGGCATCATCTACGGCGAC 479
consensus_5028#1 CTGGTGGCGTCCGTCCGCGCGGAGAACCCCAACGACATGGTCGGGATCGGCTACGGCGCC 430
******** **** ** ** ************** *** **** *** ******** *
consensus_5028#0 GGCTCCCGAACGGTCGTCTCCTACCGCGGCACGCCGCTGTGCTCCGGCCACCTCCCCACC 539
consensus_5028#1 GGGTCGCGGGCGGCGGTGTCGTACCGCGGCACGACGCTGTGCTCGGGGCGGCTGCCGGCG 490
** ** ** *** ** ** ************ ********** ** * ** ** *
consensus_5028#0 TTCTACCAGGGGTTCAAGAACGTGACGGTGATGGAGATCTCCATGGAAGGGAGGCACGGC 599
consensus_5028#1 TTCTACCAGGGCCACCGGAACACGACGGTGGTGAGGGTGGCCATGGAGGGGCGGCACGGC 550
*********** * **** ******* ** * * ******* *** ********
consensus_5028#0 TTCGGGTCGGGGCTGCAGAGCGCGCTGGAGGAGAGCGAGAAGGAAGGGAACGTGCCGCTC 659
consensus_5028#1 TTCGGGCCGGGGCTGCAGGGCGCGCTGGAGGAGAGCGAGGAGGCCGACAACGTGCCGCTC 610
****** *********** ******************** *** * ************
consensus_5028#0 GACGTGTTCGTCAGCGTGCCCGTGTCGCTGCGGTTCGGCTCGTTCGACGTCCGGGAGGTG 719
consensus_5028#1 GACGTGTACGTCAGCGCGCCGGTGACGCTCCGGCTGGGCGACGTCGACCTCCGGGAGGTG 670
******* ******** *** *** **** *** * *** ***** ***********
consensus_5028#0 AGGGTCAACGTGCACTGCGCGCTCGTCGTCGACAGCATCTCACCCAAGAAGAAGCCCACC 779
consensus_5028#1 ACGGTCAACGTGCACTGCGCGCTCGTCGTCGACGGCCTCTCGCCCAAGAAGAAGCCCGCT 730
* ******************************* ** **** *************** *
consensus_5028#0 ATCAAGTCCGCCACCTACCAGGGCAACGTAGAGTTCTGATCCATTGCATGCATCGAACAT 839
consensus_5028#1 ATCAAGTCCGCCGAATACAGGGTCAACGTAGAGTTTTAATTCAT--CAGGAATTCAGGAT 788
************ *** ** ************ * ** *** ** * ** * **
consensus_5028#0 CAATGCCTTCATTAATTTCATTTAATTGTTTGTTTTAATTTGTTATTAACTTTGCTGTTC 899
consensus_5028#1 GTAT---TGAAATGACCATGATTACTTGTCTAATCGAATTTCTT---AATGTAGCTAT-- 840
** * * * * *** **** * * ***** ** ** * *** *
consensus_5028#0 AGTGGAGTTGGGGAGAAAGTATGTTTGTGATGTAAACACTGTAGTAAGAAATGGTTCCAA 959
consensus_5028#1 -----AGCTTGTAATTAATTAAGTCTGTAACTAATACTAAATGTTA-------------- 881
** * * * ** ** ** *** * * ** * **
consensus_5028#0 ACTAAAATTCCTTTGGTTGAAGTTATATGCAGAATGCAGAGACATCTTTTG 1010
consensus_5028#1 ---------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||