These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5028#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1010 fasta sequence [TAGCTACCCACCCCCCACCCTACCTCTCCTCCGCCACCCGTCGCCGGCCGGCATCTCGCTCGGAGCCAGCGCGCCGCGGCGGCCGGAGCCCGGAGGGACAACGCAACGATCTCTCTCTAGCTAGAGCTAGAGCTATAGCTTAGCTCAGCTAATTATAATACATAGCTAGGAAGAATTAACAATTAATGGGGAAGCGCAGTGCGCCCCGGTACCCCGACGACGGCGGCGGCGGCGGCGGCGGGATTTGCTGCGTGCTGTGCTGGTGCTGCTGCTTCCTGTTCCTGATCGTCGCGGCGCTCGCCGGCGCGGCGGCGTACGCCCTGTTCCTGTACAAGCCCAAGGCGCCGTCCTACTCGGTGAGCAACATGTCGGTGTCGCAGTTCGACTTCAACTCCAACGACCTGACGCTCTACACCAAGCTGGTGGCCACCGTGCGGGCCGAGAACCCCAACGAGATGATCGGCATCATCTACGGCGACGGCTCCCGAACGGTCGTCTCCTACCGCGGCACGCCGCTGTGCTCCGGCCACCTCCCCACCTTCTACCAGGGGTTCAAGAACGTGACGGTGATGGAGATCTCCATGGAAGGGAGGCACGGCTTCGGGTCGGGGCTGCAGAGCGCGCTGGAGGAGAGCGAGAAGGAAGGGAACGTGCCGCTCGACGTGTTCGTCAGCGTGCCCGTGTCGCTGCGGTTCGGCTCGTTCGACGTCCGGGAGGTGAGGGTCAACGTGCACTGCGCGCTCGTCGTCGACAGCATCTCACCCAAGAAGAAGCCCACCATCAAGTCCGCCACCTACCAGGGCAACGTAGAGTTCTGATCCATTGCATGCATCGAACATCAATGCCTTCATTAATTTCATTTAATTGTTTGTTTTAATTTGTTATTAACTTTGCTGTTCAGTGGAGTTGGGGAGAAAGTATGTTTGTGATGTAAACACTGTAGTAAGAAATGGTTCCAAACTAAAATTCCTTTGGTTGAAGTTATATGCAGAATGCAGAGACATCTTTTG] [+] EMBL AK070630 [TAGCTACCCACCCCCCACCCTACCTCTCCTCCGCCACCCGTCGCCGGCCGGCATCTCGCTCGGAGCCAGCGCGCCGCGGCGGCCGGAGCCCGGAGGGACAACGCAACGATCTCTCTCTAGCTAGAGCTAGAGCTATAGCTTAGCTCAGCTAATTATAATACATAGCTAGGAAGAATTAACAATTAATGGGGAAGCGCAGTGCGCCCCGGTACCCCGACGACGGCGGCGGCGGCGGCGGCGGGATTTGCTGCGTGCTGTGCTGGTGCTGCTGCTTCCTGTTCCTGATCGTCGCGGCGCTCGCCGGCGCGGCGGCGTACGCCCTGTTCCTGTACAAGCCCAAGGCGCCGTCCTACTCGGTGAGCAACATGTCGGTGTCGCAGTTCGACTTCAACTCCAACGACCTGACGCTCTACACCAAGCTGGTGGCCACCGTGCGGGCCGAGAACCCCAACGAGATGATCGGCATCATCTACGGCGACGGCTCCCGAACGGTCGTCTCCTACCGCGGCACGCCGCTGTGCTCCGGCCACCTCCCCACCTTCTACCAGGGGTTCAAGAACGTGACGGTGATGGAGATCTCCATGGAAGGGAGGCACGGCTTCGGGTCGGGGCTGCAGAGCGCGCTGGAGGAGAGCGAGAAGGAAGGGAACGTGCCGCTCGACGTGTTCGTCAGCGTGCCCGTGTCGCTGCGGTTCGGCTCGTTCGACGTCCGGGAGGTGAGGGTCAACGTGCACTGCGCGCTCGTCGTCGACAGCATCTCACCCAAGAAGAAGCCCACCATCAAGTCCGCCACCTACCAGGGCAACGTAGAGTTCTGATCCATTGCATGCATCGAACATCAATGCCTTCATTAATTTCATTTAATTGTTTGTTTTAATTTGTTATTAACTTTGCTGTTCAGTGGAGTTGGGGAGAAAGTATGTTTGTGATGTAAACACTGTAGTAAGAAATGGTTCCAAACTAAAATTCCTTTGGTTGAAGTTATATGCAGAATGCAGAGACA ] [+] EMBL AU069847 [ GCATCGAACATCAATGCCTTCATTAATTTCATTTAATTGTTTGTTTTAATTTGTTATTAACTTTGCTGTTCAGTGGAGTTGGGGAGAAAGTATGTTTGTGATGTAAACACTGTAGTAAGAAATGGTTCCAAACTAAAATTCCTTTGGTTGAAGTTATATGCAGAATGCAGAGACATCTTTTG] consensusID : consensus_5028#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 881 fasta sequence [TCTCTCTAGCTAGCTAGCTCGAGCTAGGCCCTCTCTCTCCCATGGCGTACGACGGGGGCTCGGGGCCGTCCAAGCCTCCGCCGCCGCCGCGGTACGTGATGCTCACGGAGGAGTACGGCTCCAGCTCGCTGGCCACGGTCCCGCCTGGCGCCAGCCGCAACATGCCCCGGCACCGCATCACGGACGGTGGCAGCCTGCGCGGCTGCCTCTGCTGGTGCTGCTGCTTCCTCCTCCTCCTCGTCGTGGCGGTGGGGCGACGTCGGCGTACCTCCTGTACGCGTGCAGGCCCAAGGCCCCGTCCTACTCCGTGTCCGACATGTCCGTGGCGCGGTTCGACGTGAGCTCCTCCGACCTCACCGTGTACGCCAAGCTGGTGGCGTCCGTCCGCGCGGAGAACCCCAACGACATGGTCGGGATCGGCTACGGCGCCGGGTCGCGGGCGGCGGTGTCGTACCGCGGCACGACGCTGTGCTCGGGGCGGCTGCCGGCGTTCTACCAGGGCCACCGGAACACGACGGTGGTGAGGGTGGCCATGGAGGGGCGGCACGGCTTCGGGCCGGGGCTGCAGGGCGCGCTGGAGGAGAGCGAGGAGGCCGACAACGTGCCGCTCGACGTGTACGTCAGCGCGCCGGTGACGCTCCGGCTGGGCGACGTCGACCTCCGGGAGGTGACGGTCAACGTGCACTGCGCGCTCGTCGTCGACGGCCTCTCGCCCAAGAAGAAGCCCGCTATCAAGTCCGCCGAATACAGGGTCAACGTAGAGTTTTAATTCATCAGGAATTCAGGATGTATTGAAATGACCATGATTACTTGTCTAATCGAATTTCTTAATGTAGCTATAGCTTGTAATTAATTAAGTCTGTAACTAATACTAAATGTTA] [+] EMBL AK107845 [TCTCTCTAGCTAGCTAGCTCGAGCTAGGCCCTCTCTCTCCCATGGCGTACGACGGGGGCTCGGGGCCGTCCAAGCCTCCGCCGCCGCCGCGGTACGTGATGCTCACGGAGGAGTACGGCTCCAGCTCGCTGGCCACGGTCCCGCCTGGCGCCAGCCGCAACATGCCCCGGCACCGCATCACGGACGGTGGCAGCCTGCGCGGCTGCCTCTGCTGGTGCTGCTGCTTCCTCCTCCTCCTCGTCGTGGCGGTGGGGCGACGTCGGCGTACCTCCTGTACGCGTGCAGGCCCAAGGCCCCGTCCTACTCCGTGTCCGACATGTCCGTGGCGCGGTTCGACGTGAGCTCCTCCGACCTCACCGTGTACGCCAAGCTGGTGGCGTCCGTCCGCGCGGAGAACCCCAACGACATGGTCGGGATCGGCTACGGCGCCGGGTCGCGGGCGGCGGTGTCGTACCGCGGCACGACGCTGTGCTCGGGGCGGCTGCCGGCGTTCTACCAGGGCCACCGGAACACGACGGTGGTGAGGGTGGCCATGGAGGGGCGGCACGGCTTCGGGCCGGGGCTGCAGGGCGCGCTGGAGGAGAGCGAGGAGGCCGACAACGTGCCGCTCGACGTGTACGTCAGCGCGCCGGTGACGCTCCGGCTGGGCGACGTCGACCTCCGGGAGGTGACGGTCAACGTGCACTGCGCGCTCGTCGTCGACGGCCTCTCGCCCAAGAAGAAGCCCGCTATCAAGTCCGCCGAATACAGGGTCAACGTAGAGTTTTAATTCATCAGGAATTCAGGATGTATTGAAATGACCATGATTACTTGTCTAATCGAATTTCTTAATGTAGCTATAGCTTGTAATTAATTAAGTCTGTAACTAATACTAAATGTTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5028#0 TAGCTACCCACCCCCCACCCTACCTCTCCTCCGCCACCCGTCGCCGGCCGGCATCTCGCT 60 consensus_5028#1 ------------------------TCTCTCTAGCTAGCTAGCTCGAGCTAGGCCCTCTCT 36 **** ** * * * * ** * *** ** consensus_5028#0 CGGAGCCAGCGCGCCGCGGCGGCCGGAGCCCGGAGGGACAACGCAACGATCTCTCTCTAG 120 consensus_5028#1 CTCCCATGGCGTACGACGGGGGCTCGGGGCCGTCCAAGCCTC-CGCCGCCGCCGCGGTAC 95 * *** * *** *** * * *** * * * ** * * ** consensus_5028#0 CTAGAGCTAGAGCTATAGCTTAGCTCAGCTAATTATAATACATAGCTAGGAAGAATTAAC 180 consensus_5028#1 GTGATGCTCACGGAGGAGTACGGCTC------------CAGCTCGCTGGCCACGGTC--C 141 * *** * ** **** * * *** * * * * consensus_5028#0 AATTAATGGGGAAGCGCAGTGCGCCCCGGTACCCCGACGACGGCGGCGGCGGCGGCGGCG 240 consensus_5028#1 CGCCTGGCGCCAGCCGCAACATGCCCCGGCACCGCATCACGGACGGTGGCAGC--CTGCG 199 * * **** ******* *** * * * *** *** ** * *** consensus_5028#0 GGATTTGCTGCGTGCTGTGCTGGTGCTGCTGCTTCCTGTTCCTGATCGTCGCGGCGCTCG 300 consensus_5028#1 CG----GCTGC---CTCTGCTGGTGCTGCTGCTTCCTCCTCCTCCTCGTCGTGGCGGTGG 252 * ***** ** ******************** **** ****** **** * * consensus_5028#0 CCGGCG-CGGCGGCGTACGCCCTGTTCCTGTACAAGCCCAAGGCGCCGTCCTACTCGGTG 359 consensus_5028#1 --GGCGACGTCGGCGTACCTCCTGTACGCGTGCAGGCCCAAGGCCCCGTCCTACTCCGTG 310 **** ** ******** ***** * ** ** ********* *********** *** consensus_5028#0 AGCAACATGTCGGTGTCGCAGTTCGACTTCAACTCCAACGACCTGACGCTCTACACCAAG 419 consensus_5028#1 TCCGACATGTCCGTGGCGCGGTTCGACGTGAGCTCCTCCGACCTCACCGTGTACGCCAAG 370 * ******* *** *** ******* * * **** ****** ** * *** ***** consensus_5028#0 CTGGTGGCCACCGTGCGGGCCGAGAACCCCAACGAGATGATCGGCATCATCTACGGCGAC 479 consensus_5028#1 CTGGTGGCGTCCGTCCGCGCGGAGAACCCCAACGACATGGTCGGGATCGGCTACGGCGCC 430 ******** **** ** ** ************** *** **** *** ******** * consensus_5028#0 GGCTCCCGAACGGTCGTCTCCTACCGCGGCACGCCGCTGTGCTCCGGCCACCTCCCCACC 539 consensus_5028#1 GGGTCGCGGGCGGCGGTGTCGTACCGCGGCACGACGCTGTGCTCGGGGCGGCTGCCGGCG 490 ** ** ** *** ** ** ************ ********** ** * ** ** * consensus_5028#0 TTCTACCAGGGGTTCAAGAACGTGACGGTGATGGAGATCTCCATGGAAGGGAGGCACGGC 599 consensus_5028#1 TTCTACCAGGGCCACCGGAACACGACGGTGGTGAGGGTGGCCATGGAGGGGCGGCACGGC 550 *********** * **** ******* ** * * ******* *** ******** consensus_5028#0 TTCGGGTCGGGGCTGCAGAGCGCGCTGGAGGAGAGCGAGAAGGAAGGGAACGTGCCGCTC 659 consensus_5028#1 TTCGGGCCGGGGCTGCAGGGCGCGCTGGAGGAGAGCGAGGAGGCCGACAACGTGCCGCTC 610 ****** *********** ******************** *** * ************ consensus_5028#0 GACGTGTTCGTCAGCGTGCCCGTGTCGCTGCGGTTCGGCTCGTTCGACGTCCGGGAGGTG 719 consensus_5028#1 GACGTGTACGTCAGCGCGCCGGTGACGCTCCGGCTGGGCGACGTCGACCTCCGGGAGGTG 670 ******* ******** *** *** **** *** * *** ***** *********** consensus_5028#0 AGGGTCAACGTGCACTGCGCGCTCGTCGTCGACAGCATCTCACCCAAGAAGAAGCCCACC 779 consensus_5028#1 ACGGTCAACGTGCACTGCGCGCTCGTCGTCGACGGCCTCTCGCCCAAGAAGAAGCCCGCT 730 * ******************************* ** **** *************** * consensus_5028#0 ATCAAGTCCGCCACCTACCAGGGCAACGTAGAGTTCTGATCCATTGCATGCATCGAACAT 839 consensus_5028#1 ATCAAGTCCGCCGAATACAGGGTCAACGTAGAGTTTTAATTCAT--CAGGAATTCAGGAT 788 ************ *** ** ************ * ** *** ** * ** * ** consensus_5028#0 CAATGCCTTCATTAATTTCATTTAATTGTTTGTTTTAATTTGTTATTAACTTTGCTGTTC 899 consensus_5028#1 GTAT---TGAAATGACCATGATTACTTGTCTAATCGAATTTCTT---AATGTAGCTAT-- 840 ** * * * * *** **** * * ***** ** ** * *** * consensus_5028#0 AGTGGAGTTGGGGAGAAAGTATGTTTGTGATGTAAACACTGTAGTAAGAAATGGTTCCAA 959 consensus_5028#1 -----AGCTTGTAATTAATTAAGTCTGTAACTAATACTAAATGTTA-------------- 881 ** * * * ** ** ** *** * * ** * ** consensus_5028#0 ACTAAAATTCCTTTGGTTGAAGTTATATGCAGAATGCAGAGACATCTTTTG 1010 consensus_5028#1 --------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||