These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5034#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1705 fasta sequence [AAGAACTTCTCCTTCCCCTGCTTCCCCCACCGGCCATGGCCATGTCCATGGCGATGTCGAGAGCTCTCGCCGCGCGGCATCGAAGCCATTTGGGCCACCGAATTGAGGTGAAGAGCCACCATGCGTCCCCGCCGCGGCTTCCTCTTCTTCCTCGGAGTCCCGGGCTCACGCTCGCGTCGCGCCCGCGGATGCTACCGGCGAGGCCCAGGATGTCGTCGAGTGAGTCGGACCTGTCGCCGACGCCGCCGTCGGAGCGCACCATGACGGCCTGGGACCTAGCCAGCCTCTGGGTCGGCCTTGTGGTCGGCGTGCCGTCCTACTACCTCGCCGGCAGCCTCGTCGACCTCGGCATGTCGGCGCTGCAGGGCGTCGCGACCGTCGCGTTCGCCAACCTGGTGGTGCTCGTCTCGCTCGTGCTCACGGCCGCGCCGGCGGTCACGCACGGGCTGCCGTTCCCGGTGCTCGCGCGAGCGGCGTTCGGGGTGCGCGGCGCGCACTTGCCGGCGGTCATCCGCGCGCTCGTCGGCTGCGGGTGGTTCGGCATCGAGTCCTGGATCGGTGGCCGCGCCGTGTTCCTCCTCCTGCCGTCCAGGCTCAAGTCGTACCAGCCGCTGCTCGCGCCGGTGCCAGGCCTCGGTGCAGCGCCGCTGGAGTTCGCGTGCTTCCTCGCGTTCTGGGCCGCGCAGCTCGGCGTCATCATGCACGGGATGGAGGGCATCCGCAAGCTCGAGAAGTACTCGGCGCCGGTGCTCATCGTGCTCACCTCCGCGCTGCTGGCCTGGGCCTACGTGTCCGCCGGCGGCTTCGGGCGCATCCTCTCGCTGCCGCCGAGGCTGACGCGCGCCGAGTTCTGGAAGGTGCTCTTCCCGTCGCTCACCGCGAACATCAGCTTCTGGGCGACGGTGGCCATCAACATACCGGACTTCGCGCGGTACGCGCGGAGCCAGGCGGACCAGGTGCTCGGCCAGGCCGGGCTGCCGGTGTTCATGGGCATGTTCACCTTCGCCGGCCTCGCCGTGACGTCCGCCACCGAGGCCATCTTCGGCCACGTCATCTCCGACCCCATCGAGCTCCTCGGCCGCATCGGCGGGCCGGCGACGACGGTGCTCGCCATCGTCGGCATCAGCCTCGCGACCATCACGACCAACATTGCCGCCAACGTGGTGGCGCCGGCGAACGCGCTCGTCAGCATGAGCCCGCGCAAGTTCACGTTCGCCAAGGGGGCGCTGGTCACCGCGTTGCTCGGCATCGCCTTCCAGCCATGGCGGCTGCTCAGCCCCAGCGAGAGCTTCGTCTACACATGGCTGCTCGGCTACTCGGCTCTCATGGGCCCGATCGGAGGGATCATCCTCGCCGACCACTACATCGTCCGGCGAACCGCGCTGGACGTCGACGCGCTCTACTCGGAGGACAGCCACGGGCCTTACTATTTCCAGGGCGGTTTCAACGTCGCCGCCATGGCGGCGATGGCGGCCGGAGTTGCGCCGATCGTGCCGGGATTCCTGCACAATGTTGGAGTTCTACCGAGCGTCTCCAAGGCATTTGAGACAGCCTACAACAACGCTTGGTTCGTCAGTTTTTTCGTCGCCGGCGCCGTCTACTGCCTGCTCTGTCGCCGGAATAGGAATGAACTGAAACACCAGCACGATTGATTGTAATTTGCAAACACAAAGGAGTAAAAAATGTTGCAAATGATAGTTGAAAG] [+] EMBL AK106879 [AAGAACTTCTCCTTCCCCTGCTTCCCCCACCGGCCATGGCCATGTCCATGGCGATGTCGAGAGCTCTCGCCGCGCGGCATCGAAGCCATTTGGGCCACCGAATTGAGGTGAAGAGCCACCATGCGTCCCCGCCGCGGCTTCCTCTTCTTCCTCGGAGTCCCGGGCTCACGCTCGCGTCGCGCCCGCGGATGCTACCGGCGAGGCCCAGGATGTCGTCGAGTGAGTCGGACCTGTCGCCGACGCCGCCGTCGGAGCGCACCATGACGGCCTGGGACCTAGCCAGCCTCTGGGTCGGCCTTGTGGTCGGCGTGCCGTCCTACTACCTCGCCGGCAGCCTCGTCGACCTCGGCATGTCGGCGCTGCAGGGCGTCGCGACCGTCGCGTTCGCCAACCTGGTGGTGCTCGTCTCGCTCGTGCTCACGGCCGCGCCGGCGGTCACGCACGGGCTGCCGTTCCCGGTGCTCGCGCGAGCGGCGTTCGGGGTGCGCGGCGCGCACTTGCCGGCGGTCATCCGCGCGCTCGTCGGCTGCGGGTGGTTCGGCATCGAGTCCTGGATCGGTGGCCGCGCCGTGTTCCTCCTCCTGCCGTCCAGGCTCAAGTCGTACCAGCCGCTGCTCGCGCCGGTGCCAGGCCTCGGTGCAGCGCCGCTGGAGTTCGCGTGCTTCCTCGCGTTCTGGGCCGCGCAGCTCGGCGTCATCATGCACGGGATGGAGGGCATCCGCAAGCTCGAGAAGTACTCGGCGCCGGTGCTCATCGTGCTCACCTCCGCGCTGCTGGCCTGGGCCTACGTGTCCGCCGGCGGCTTCGGGCGCATCCTCTCGCTGCCGCCGAGGCTGACGCGCGCCGAGTTCTGGAAGGTGCTCTTCCCGTCGCTCACCGCGAACATCAGCTTCTGGGCGACGGTGGCCATCAACATACCGGACTTCGCGCGGTACGCGCGGAGCCAGGCGGACCAGGTGCTCGGCCAGGCCGGGCTGCCGGTGTTCATGGGCATGTTCACCTTCGCCGGCCTCGCCGTGACGTCCGCCACCGAGGCCATCTTCGGCCACGTCATCTCCGACCCCATCGAGCTCCTCGGCCGCATCGGCGGGCCGGCGACGACGGTGCTCGCCATCGTCGGCATCAGCCTCGCGACCATCACGACCAACATTGCCGCCAACGTGGTGGCGCCGGCGAACGCGCTCGTCAGCATGAGCCCGCGCAAGTTCACGTTCGCCAAGGGGGCGCTGGTCACCGCGTTGCTCGGCATCGCCTTCCAGCCATGGCGGCTGCTCAGCCCCAGCGAGAGCTTCGTCTACACATGGCTGCTCGGCTACTCGGCTCTCATGGGCCCGATCGGAGGGATCATCCTCGCCGACCACTACATCGTCCGGCGAACCGCGCTGGACGTCGACGCGCTCTACTCGGAGGACAGCCACGGGCCTTACTATTTCCAGGGCGGTTTCAACGTCGCCGCCATGGCGGCGATGGCGGCCGGAGTTGCGCCGATCGTGCCGGGATTCCTGCACAATGTTGGAGTTCTACCGAGCGTCTCCAAGGCATTTGAGACAGCCTACAACAACGCTTGGTTCGTCAGTTTTTTCGTCGCCGGCGCCGTCTACTGCCTGCTCTGTCGCCGGAATAGGAATGAACTGAAACACCAGCACGATTGATTGTAATTTGCAAACACAAAGGAGTAAAAAATGTTGCAAATGATAGTTGAAAG] [+] EMBL AU225219 [ gCCGC TTGGACGTCGACGCGCTCTACTCGGAGGACAGCCACGGGCCTTACTATTTCCAGGGCGGTTTCAACGTCGCCGCCATGGCGGCGATGGCGGCCGGAGTTGCGCCGATCGTGCCGGGATTCCTGCACAATGTTGGAGTTCTACCGAGCGTCTCCAAGGCATTTGANACAGCCTACAACAACGCTTGGTTCGTCAGTTTTTTCGTCGCCGGCGCCGTCTACTGCCTGCTCTGTCNCCGGAATANGAATG ] consensusID : consensus_5034#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 527 fasta sequence [GGAGAGGCGTGCACGGGCTCCCGTTCCCGGTGCTCGCGCGTACGGCGTTCGGGGTGCGCAGCACGCACTTGCCGCGGTCATTAGCGTGCTCATCGTTGCGGGTGGTTCGGCATCGAATCCTGGATCGGTGCCGCGCTGTGTTCCTCCTCCTGCCGTCCAGGCTCAAAGTCGTACCAGCCGCTGCTCGCGCCAATGCCAGGCCTGGGGCTGCGCCGCTGGAGTTCGCGTGCTTCCTCGCTTTCTGGCCGCGCAGCTCGGCGTCATCATGCACGGCATGGAGGGCATCAGCAAGCTCGAGAAGTACTTGGACCATCACGACCAACATTCCCGCCAACGTGGTGGCGCCAGCAAACGCGCTCGTCAGCTTGAGCCCGCTGAAGTTCACGTTCGCCAAGGTGGCGCTGGTCACTGCGTTGCTCGGCATCGCCTTCCAGCCATGGCGGCTGTTCGGCTCCAGCGAGAGCTTCATCTACACATGCCCGTTCGAGCTCTCATCCGCCACCACGCCGCTTAGAGATCCAAGCTAC] [+] EMBL BI810756 [GGAGAGGCGTGCACGGGCTCCCGTTCCCGGTGCTCGCGCGTACGGCGTTCGGGGTGCGCAGCACGCACTTGCCGCGGTCATTAGCGTGCTCATCGTTGCGGGTGGTTCGGCATCGAATCCTGGATCGGTGCCGCGCTGTGTTCCTCCTCCTGCCGTCCAGGCTCAAAGTCGTACCAGCCGCTGCTCGCGCCAATGCCAGGCCTGGGGCTGCGCCGCTGGAGTTCGCGTGCTTCCTCGCTTTCTGGCCGCGCAGCTCGGCGTCATCATGCACGGCATGGAGGGCATCAGCAAGCTCGAGAAGTACTTGGACCATCACGACCAACATTCCCGCCAACGTGGTGGCGCCAGCAAACGCGCTCGTCAGCTTGAGCCCGCTGAAGTTCACGTTCGCCAAGGTGGCGCTGGTCACTGCGTTGCTCGGCATCGCCTTCCAGCCATGGCGGCTGTTCGGCTCCAGCGAGAGCTTCATCTACACATGCCCGTTCGAGCTCTCATCCGCCACCACGCCGCTTAGAGATCCAAGCTAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5034#0 AAGAACTTCTCCTTCCCCTGCTTCCCCCACCGGCCATGGCCATGTCCATGGCGATGTCGA 60 consensus_5034#1 ------------------------------------------------------------ consensus_5034#0 GAGCTCTCGCCGCGCGGCATCGAAGCCATTTGGGCCACCGAATTGAGGTGAAGAGCCACC 120 consensus_5034#1 ------------------------------------------------------------ consensus_5034#0 ATGCGTCCCCGCCGCGGCTTCCTCTTCTTCCTCGGAGTCCCGGGCTCACGCTCGCGTCGC 180 consensus_5034#1 ------------------------------------------------------------ consensus_5034#0 GCCCGCGGATGCTACCGGCGAGGCCCAGGATGTCGTCGAGTGAGTCGGACCTGTCGCCGA 240 consensus_5034#1 ------------------------------------------------------------ consensus_5034#0 CGCCGCCGTCGGAGCGCACCATGACGGCCTGGGACCTAGCCAGCCTCTGGGTCGGCCTTG 300 consensus_5034#1 ------------------------------------------------------------ consensus_5034#0 TGGTCGGCGTGCCGTCCTACTACCTCGCCGGCAGCCTCGTCGACCTCGGCATGTCGGCGC 360 consensus_5034#1 ------------------------------------------------------------ consensus_5034#0 TGCAGGGCGTCGCGACCGTCGCGTTCGCCAACCTGGTGGTGCTCGTCTCGCTCGTGCTCA 420 consensus_5034#1 ------------------------------------------------------------ consensus_5034#0 CGGCCGCGCCGGCGGTCACGCACGGGCTGCCGTTCCCGGTGCTCGCGCGAGCGGCGTTCG 480 consensus_5034#1 ---------GGAGAGGCGTGCACGGGCTCCCGTTCCCGGTGCTCGCGCGTACGGCGTTCG 51 * * * ********* ******************** ********* consensus_5034#0 GGGTGCGCGGCGCGCACTTGCCGGCGGTCATCCGCGCGCTCGTCGGCTGCGGGTGGTTCG 540 consensus_5034#1 GGGTGCGCAGCACGCACTTGCCG-CGGTCATTAGCGTGCTCATCG-TTGCGGGTGGTTCG 109 ******** ** *********** ******* *** **** *** ************* consensus_5034#0 GCATCGAGTCCTGGATCGGTGGCCGCGCCGTGTTCCTCCTCCTGCCGTCCAGGCTCAA-G 599 consensus_5034#1 GCATCGAATCCTGGATCGGTG-CCGCGCTGTGTTCCTCCTCCTGCCGTCCAGGCTCAAAG 168 ******* ************* ****** ***************************** * consensus_5034#0 TCGTACCAGCCGCTGCTCGCGCCGGTGCCAGGCCTCGGTGCAGCGCCGCTGGAGTTCGCG 659 consensus_5034#1 TCGTACCAGCCGCTGCTCGCGCCAATGCCAGGCCT-GGGGCTGCGCCGCTGGAGTTCGCG 227 *********************** ********** ** ** ****************** consensus_5034#0 TGCTTCCTCGCGTTCTGGGCCGCGCAGCTCGGCGTCATCATGCACGGGATGGAGGGCATC 719 consensus_5034#1 TGCTTCCTCGCTTTCTGG-CCGCGCAGCTCGGCGTCATCATGCACGGCATGGAGGGCATC 286 *********** ****** **************************** ************ consensus_5034#0 CGCAAGCTCGAGAAGTACTCGGCGC-CGGTGCTCATCGTGCTCACCTCCGCGCTGCTGGC 778 consensus_5034#1 AGCAAGCTCGAGAAGTACTTGGACCATCACGACCAACATTCCCGCCAACG---TGGTGGC 343 ****************** ** * * ** * * * * ** ** ** **** consensus_5034#0 CTGGGCCTACGTGTCCGCCGGCGGCTTCGGGCGCATCCTCTCGCTGCCGCCGAGGCTGAC 838 consensus_5034#1 GCCAGCAAACGCGCTCGTCAGC--TTGAGCCCGCTGAAGTTCACGTTCGCCAAGG-TGGC 400 ** *** * ** * ** * * *** ** * **** *** ** * consensus_5034#0 GCGCGCCGAGTTCTGGAAGGTGCTCTTCCCGTCGCTCACCGCGAACATCAGCTTCTGGGC 898 consensus_5034#1 GCTGGTCACTGCGTTGCTCG-GCATCGCCTTCCAGCCATGGCGGCTGTTCGGCTCCAG-C 458 ** * * * * * ** ** * ** *** * * ** * * consensus_5034#0 GACGGTGGCCATCAACATACCGGACTTCGCGCGGTACGCGCGGAGCCAGGCGGACCAGGT 958 consensus_5034#1 GAGAGCT-TCATCTACACATGCCCGTTCGAGCTCT-CATCCGCCACCACGCCGCTTAGAG 516 ** * **** *** * **** ** * * ** *** ** * ** consensus_5034#0 GCTCGGCCAGGCCGGGCTGCCGGTGTTCATGGGCATGTTCACCTTCGCCGGCCTCGCCGT 1018 consensus_5034#1 ATCCAAGCTAC------------------------------------------------- 527 * * consensus_5034#0 GACGTCCGCCACCGAGGCCATCTTCGGCCACGTCATCTCCGACCCCATCGAGCTCCTCGG 1078 consensus_5034#1 ------------------------------------------------------------ consensus_5034#0 CCGCATCGGCGGGCCGGCGACGACGGTGCTCGCCATCGTCGGCATCAGCCTCGCGACCAT 1138 consensus_5034#1 ------------------------------------------------------------ consensus_5034#0 CACGACCAACATTGCCGCCAACGTGGTGGCGCCGGCGAACGCGCTCGTCAGCATGAGCCC 1198 consensus_5034#1 ------------------------------------------------------------ consensus_5034#0 GCGCAAGTTCACGTTCGCCAAGGGGGCGCTGGTCACCGCGTTGCTCGGCATCGCCTTCCA 1258 consensus_5034#1 ------------------------------------------------------------ consensus_5034#0 GCCATGGCGGCTGCTCAGCCCCAGCGAGAGCTTCGTCTACACATGGCTGCTCGGCTACTC 1318 consensus_5034#1 ------------------------------------------------------------ consensus_5034#0 GGCTCTCATGGGCCCGATCGGAGGGATCATCCTCGCCGACCACTACATCGTCCGGCGAAC 1378 consensus_5034#1 ------------------------------------------------------------ consensus_5034#0 CGCGCTGGACGTCGACGCGCTCTACTCGGAGGACAGCCACGGGCCTTACTATTTCCAGGG 1438 consensus_5034#1 ------------------------------------------------------------ consensus_5034#0 CGGTTTCAACGTCGCCGCCATGGCGGCGATGGCGGCCGGAGTTGCGCCGATCGTGCCGGG 1498 consensus_5034#1 ------------------------------------------------------------ consensus_5034#0 ATTCCTGCACAATGTTGGAGTTCTACCGAGCGTCTCCAAGGCATTTGAGACAGCCTACAA 1558 consensus_5034#1 ------------------------------------------------------------ consensus_5034#0 CAACGCTTGGTTCGTCAGTTTTTTCGTCGCCGGCGCCGTCTACTGCCTGCTCTGTCGCCG 1618 consensus_5034#1 ------------------------------------------------------------ consensus_5034#0 GAATAGGAATGAACTGAAACACCAGCACGATTGATTGTAATTTGCAAACACAAAGGAGTA 1678 consensus_5034#1 ------------------------------------------------------------ consensus_5034#0 AAAAATGTTGCAAATGATAGTTGAAAG 1705 consensus_5034#1 --------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||