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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5045#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1712 fasta sequence
[CCACCCAAATCCTTTCCTCCTCCGCCATCCCAATTCCATTCCATTCCACCACCCCCAAAAAAATCTCCACCCGCCGCCGCCTCCGGCGACACCGCCACCGCCCACCGGAGAGATGTTGCTGGTGAGCCAGGCCGCCAATGGTTCCGTCTCCGCGCGGCGGCTGCCCTCCAAGCAGCCCCTCCGGATCCCCCGCCACCACCACCGCCACCGAGGACCCCGTCCTCGTCGGCGTTACGGACGAGGGCGTCCCCCTCGAGGGCGTCATCCAGTTCGATAAGCCCGGCGACGCCGCCGCCGAGTCCAAGCTCGTCTCCTACGCGAAGCTGGGGCTTCTGGCCAGCGGCGATGTGCTCTGCCTCCTCGTCTTCTCCGCGATAGGAAGGTTCAGCCATGGGCTGCCTGTTCTTGACGCGGAGACGTTCAAGACGGCCGATCCCTTCATTGCTGGATGGTTGCTCAGTGCCTATCTCCTTGGCGGATTCGGGGATGATGCGAAAGGTCGCAATGGCGTGGGGAACGCTGTAGTTGTTGCGGCCAAATCCTGGGCTGTTGGGATACCGTTGGGCCTCGCCATTCGAGCACTGTCATCTGGTCATATTCCACCAACTCCTTTTATCCTGGTAGCCATGGGAAGTACTTGGGTTTTGTTGACTGGATGGCGTGCCCTGGTTTCTCTACTATTTTCCACTGGACAGAGCCAGCAAGATGATGTCTACAGGCGGGGAAGTCCTTTTGAGCTTTTTGAGGTTAAGAAAGTTCTTCAAATTATTGGCATATTTTTTTACACCTGCAACTAGTTTGCTGAAGAGTGATGTTCTGGGCCTATACTTTTGTTGTCACGTAAATGGTTCCATTTGGAGCAACTAGTAAAGAATGCATACAACCACATCTAACCATTTAAACTTTTGCGCCTTATTACCTGATGATACCATGCTACTCACGATGATTAGAAACTCTACATTTTATTGACTAACCCTATAGAGTGTCATCTAACAGCCACCGAACAATACTATCAATCCTCACACATCAGTATAACTGCAAAAATGATGAAATCAAACAATTATTTGAAATTTTTCAATGAGCATGGATCTTATGTTTCTTTATATATATTGGGAGTTTGCTTTGGTCATAAGTTGGCTACTTGCCTGAATATATCTTGGGAGTTTGCTTTCTGAATATATCTCACTGTAACCAATTTGTAAGTTGTAACATCATGGCTCCAAACTCATCATGCATGACTGGAGGAGCTCATTGAGGTAGCCAGAATTCGTAAGTTAATAAAATGGTGAGAGCTGAACTGTTGCATTTTTTTTAAAAAAAAATCTGAAAGTGATCATGTGATAAGGTTTCTTGGTTTCTGTCGAAAGCCATTTTTTCCTTGCATTCTTACTGATAATTGTTTACTCAAGAAACTGCTTGCAAGAAGCGCTAACTGCTTCTATTGTTTTGACAGTTGCTCACATCACTGGTGCGAAGGTGGTGATATCTGATATTGTGTAAAGGTGATGATTGCCATCCAACACTAGGTTCTAATTTCTATCGTGTAAGTACAATTTTGGAGGGAAGATGAGAAGGCTAGATCATAGTTGGAAGCACATCCATAATCGCTTTCTGTAACAAGATGGCACAAGGCTGTTACATATGTTAATCTTGAAGATGTACTACTAAATCCATCACTGACATCTCTTTCTTGTGTAGCATGGCCCAATCAT]
[+] EMBL AK107548 [CCACCCAAATCCTTTCCTCCTCCGCCATCCCAATTCCATTCCATTCCACCACCCCCAAAAAAATCTCCACCCGCCGCCGCCTCCGGCGACACCGCCACCGCCCACCGGAGAGATGTTGCTGGTGAGCCAGGCCGCCAATGGTTCCGTCTCCGCGCGGCGGCTGCCCTCCAAGCAGCCCCTCCGGATCCCCCGCCACCACCACCGCCACCGAGGACCCCGTCCTCGTCGGCGTTACGGACGAGGGCGTCCCCCTCGAGGGCGTCATCCAGTTCGATAAGCCCGGCGACGCCGCCGCCGAGTCCAAGCTCGTCTCCTACGCGAAGCTGGGGCTTCTGGCCAGCGGCGATGTGCTCTGCCTCCTCGTCTTCTCCGCGATAGGAAGGTTCAGCCATGGGCTGCCTGTTCTTGACGCGGAGACGTTCAAGACGGCCGATCCCTTCATTGCTGGATGGTTGCTCAGTGCCTATCTCCTTGGCGGATTCGGGGATGATGCGAAAGGTCGCAATGGCGTGGGGAACGCTGTAGTTGTTGCGGCCAAATCCTGGGCTGTTGGGATACCGTTGGGCCTCGCCATTCGAGCACTGTCATCTGGTCATATTCCACCAACTCCTTTTATCCTGGTAGCCATGGGAAGTACTTGGGTTTTGTTGACTGGATGGCGTGCCCTGGTTTCTCTACTATTTTCCACTGGACAGAGCCAGCAAGATGATGTCTACAGGCGGGGAAGTCCTTTTGAGCTTTTTGAGGTTAAGAAAGTTCTTCAAATTATTGGCATATTTTTTTACACCTGCAACTAGTTTGCTGAAGAGTGATGTTCTGGGCCTATACTTTTGTTGTCACGTAAATGGTTCCATTTGGAGCAACTAGTAAAGAATGCATACAACCACATCTAACCATTTAAACTTTTGCGCCTTATTACCTGATGATACCATGCTACTCACGATGATTAGAAACTCTACATTTTATTGACTAACCCTATAGAGTGTCATCTAACAGCCACCGAACAATACTATCAATCCTCACACATCAGTATAACTGCAAAAATGATGAAATCAAACAATTATTTGAAATTTTTCAATGAGCATGGATCTTATGTTTCTTTATATATATTGGGAGTTTGCTTTGGTCATAAGTTGGCTACTTGCCTGAATATATCTTGGGAGTTTGCTTTCTGAATATATCTCACTGTAACCAATTTGTAAGTTGTAACATCATGGCTCCAAACTCATCATGCATGACTGGAGGAGCTCATTGAGGTAGCCAGAATTCGTAAGTTAATAAAATGGTGAGAGCTGAACTGTTGCATTTTTTTTAAAAAAAAATCTGAAAGTGATCATGTGATAAGGTTTCTTGGTTTCTGTCGAAAGCCATTTTTTCCTTGCATTCTTACTGATAATTGTTTACTCAAGAAACTGCTTGCAAGAAGCGCTAACTGCTTCTATTGTTTTGACAGTTGCTCACATCACTGGTGCGAAGGTGGTGATATCTGATATTGTGTAAAGGTGATGATTGCCATCCAACACTAGGTTCTAATTTCTATCGTGTAAGTACAATTTTGGAGGGAAGATGAGAAGGCTAGATCATAGTTGGAAGCACATCCATAATCGCTTTCTGTAACAAGATGGCACAAGGCTGTTACATATGTTAATCTTGAAGATGTACTACTAAATCCATCACTGACATCTCTTTCTTGTGTAGCATGGCCCAATCAT]
consensusID : consensus_5045#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 483 fasta sequence
[TGTTTGGGGATACCGTTGGGCCCTCGCCATTCGAGCANGCNTGTCATCTGGTCAGTATGTCCACCCAACTCCTTTTATCCTGGTAGCCACTGGGAAGTACTTGGGTTTTGTTGACTGGATGGCGTGCCCCTGGTTTCTCTACTATTTTCCCCTGGACCAGAGCCAGCAAGATGATGTCTACACGGCCGGGGAAGTCCTTTTGAGCTTTTTGAGTTGCTCACATCACTGGTGCGAAGGTGGTGATATCTGATATTGTGTAAAGGTGATGATTGCCATCCNACACCTAGGCTTCTAATTTCTATCGTGTAAGTAC-ATTTTGGAGGGAAGATGAGAAGGCTAGATCATAGTTGGAAGCACATCCATAATCGCTTTCTGTAACACAGATGGCACCAAGGCTGTTACATATGTTAATCTTGAAGATGTACTACTAAACCCCTC-CTGACATCTCTTTCTTGTGTAAAAAGGCCCAATCATTTTGATTAC]
[+] EMBL BM421685 [TGTTTGGGGATACCGTTGGGCCCTCGCCATTCGAGCANGCNTGTCATCTGGTCAGTATGTCCACCCAACTCCTTTTATCCTGGTAGCCACTGGGAAGTACTTGGGTTTTGTTGACTGGATGGCGTGCCCCTGGTTTCTCTACTATTTTCCCCTGGACCAGAGCCAGCAAGATGATGTCTACACGGCCGGGGAAGTCCTTTTGAGCTTTTTGAGTTGCTCACATCACTGGTGCGAAGGTGGTGATATCTGATATTGTGTAAAGGTGATGATTGCCATCCNACACCTAGGCTTCTAATTTCTATCGTGTAAGTAC ATTTTGGAGGGAAGATGAGAAGGCTAGATCATAGTTGGAAGCACATCCATAATCGCTTTCTGTAACACAGATGGCACCAAGGCTGTTACATATGTTAATCTTGAAGATGTACTACTAAACCCCTC CTGACATCTCTTTCTTGTGTAAAAA ]
[+] EMBL CB685177 [ nacTGTCATCTGGTCA TAT TCCA CCAACTCCTTTTATCCTGGTAGCCA TGGGAAGTACTTGGGTTTTGTTGACTGGATGGCGTG CCCTGGTTTCTCTACTATTTTCCACTGGA CAGAGCCAGCAAGATGATGTCTACA GG CGGGGAAGTCCTTTTGAGCTTTTTGAGTTGCTCACATCACTGGTGCGAAGGTGGTGATATCTGATATTGTGTAAAGGTGATGATTGCCATCCAACA CTAGG TTCTAATTTCTATCGCGTAAGTACAATTTTGGAGGGAAGATGAGAAGGCTAGATCATAGTTGGAAGCACATCCATAATCGCTTTCTGTAACA AGATGGCA CAAGGCTGTTACATATGTTAATCTTGAAGATGTACTACTAAATCCATCACTGACATCTCTTTCTTGTGTAGCATGGCCCAATCATTTTGATTAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5045#0 CCACCCAAATCCTTTCCTCCTCCGCCATCCCAATTCCATTCCATTCCACCACCCCCAAAA 60
consensus_5045#1 ------------------------------------------------------------
consensus_5045#0 AAATCTCCACCCGCCGCCGCCTCCGGCGACACCGCCACCGCCCACCGGAGAGATGTTGCT 120
consensus_5045#1 ------------------------------------------------------------
consensus_5045#0 GGTGAGCCAGGCCGCCAATGGTTCCGTCTCCGCGCGGCGGCTGCCCTCCAAGCAGCCCCT 180
consensus_5045#1 ------------------------------------------------------------
consensus_5045#0 CCGGATCCCCCGCCACCACCACCGCCACCGAGGACCCCGTCCTCGTCGGCGTTACGGACG 240
consensus_5045#1 ------------------------------------------------------------
consensus_5045#0 AGGGCGTCCCCCTCGAGGGCGTCATCCAGTTCGATAAGCCCGGCGACGCCGCCGCCGAGT 300
consensus_5045#1 ------------------------------------------------------------
consensus_5045#0 CCAAGCTCGTCTCCTACGCGAAGCTGGGGCTTCTGGCCAGCGGCGATGTGCTCTGCCTCC 360
consensus_5045#1 ------------------------------------------------------------
consensus_5045#0 TCGTCTTCTCCGCGATAGGAAGGTTCAGCCATGGGCTGCCTGTTCTTGACGCGGAGACGT 420
consensus_5045#1 ------------------------------------------------------------
consensus_5045#0 TCAAGACGGCCGATCCCTTCATTGCTGGATGGTTGCTCAGTGCCTATCTCCTTGGCGGAT 480
consensus_5045#1 ------------------------------------------------------------
consensus_5045#0 TCGGGGATGATGCGAAAGGTCGCAATGGCGTGGGGAACGCTGTAGTTGTTGCGGCCAAAT 540
consensus_5045#1 ------------------------------------------------------------
consensus_5045#0 CCTGGGCTGTTGGGATACCGTTGGGCCTCGCCATTCGAGCACTGTCATCTGGTCATATTC 600
consensus_5045#1 ------------------------------------------------------------
consensus_5045#0 CACCAACTCCTTTTATCCTGGTAGCCATGGGAAGTACTTGGGTTTTGTTGACTGGATGGC 660
consensus_5045#1 ------------------------------------------------------------
consensus_5045#0 GTGCCCTGGTTTCTCTACTATTTTCCACTGGACAGAGCCAGCAAGATGATGTCTACAGGC 720
consensus_5045#1 ------------------------------------------------------------
consensus_5045#0 GGGGAAGTCCTTTTGAGCTTTTTGAGGTTAAGAAAGTTCTTCAAATTATTGGCATATTTT 780
consensus_5045#1 ------------------------------------------------------------
consensus_5045#0 TTTACACCTGCAACTAGTTTGCTGAAGAGTGATGTTCTGGGCCTATACTTTTGTTGTCAC 840
consensus_5045#1 ------------------------------------------------------------
consensus_5045#0 GTAAATGGTTCCATTTGGAGCAACTAGTAAAGAATGCATACAACCACATCTAACCATTTA 900
consensus_5045#1 ------------------------------------------------------------
consensus_5045#0 AACTTTTGCGCCTTATTACCTGATGATACCATGCTACTCACGATGATTAGAAACTCTACA 960
consensus_5045#1 ------------------------------------------------------------
consensus_5045#0 TTTTATTGACTAACCCTATAGAGTGTCATCTAACAGCCACCGAACAATACTATCAATCCT 1020
consensus_5045#1 ------------------------------------------------------------
consensus_5045#0 CACACATCAGTATAACTGCAAAAATGATGAAATCAAACAATTATTTGAAATTTTTCAATG 1080
consensus_5045#1 ------------------------------------------------------------
consensus_5045#0 AGCATGGATCTTATGTTTCTTTATATATATTGGGAGTTTGCTTTGGTCATAAGTTGGCTA 1140
consensus_5045#1 ------------------------------------------------------------
consensus_5045#0 CTTGCCTGAATATATCTTGGGAGTTTGCTTTCTGAATATATCTCACTGTAACCAATTTGT 1200
consensus_5045#1 ------------------------------------------------------------
consensus_5045#0 AAGTTGTAACATCATGGCTCCAAACTCATCATGCATGACTGGAGGAGCTCATTGAGGTAG 1260
consensus_5045#1 -----------------------------------TGTTTGG-GGATACCGTTG-GGCCC 23
** *** *** * *** **
consensus_5045#0 CCAGAATTCG--TAAGTTAATAAAATGGTGAGA--GCTGAACTGTTGCATTTTTTTTAAA 1316
consensus_5045#1 TCGCCATTCGAGCANGCNTGTCATCTGGTCAGTATGTCCACCCAACTCCTTTTATCCTGG 83
* ***** * * * * **** ** * * * * **** *
consensus_5045#0 AAAAAATCTGAAAGTGATCATGTGATAAGGTTTCTTGGTTTCTGTCGAAAGCCATTTTTT 1376
consensus_5045#1 TAGCCACTGGGAAGTACTTGGGTTTT---GTTGACTGG---ATGGCGTGCCCCTGGTTTC 137
* * * **** * ** * *** *** ** ** ** ***
consensus_5045#0 CCTTGCATTCTTACTGATAATTGTTTACTCAAGAAACTGCTTGCAAGAAGCGCTAACTGC 1436
consensus_5045#1 TCTACTATTTTCCCCTGGACCAGAGCCAGCAAGATGATGTCTACACGGCCGGGGAAGTCC 197
** *** * * * * ***** ** * ** * * ** * *
consensus_5045#0 TTCTATTGTTTTGACAGTTGCTCACATCACTGGTGCGAAGGTGGTGATATCTGATATTGT 1496
consensus_5045#1 TTTTGA-GCTTTTTGAGTTGCTCACATCACTGGTGCGAAGGTGGTGATATCTGATATTGT 256
** * * *** *********************************************
consensus_5045#0 GTAAAGGTGATGATTGCCATCCAACAC-TAGG-TTCTAATTTCTATCGTGTAAGTACAAT 1554
consensus_5045#1 GTAAAGGTGATGATTGCCATCCNACACCTAGGCTTCTAATTTCTATCGTGTAAGTACA-T 315
********************** **** **** ************************* *
consensus_5045#0 TTTGGAGGGAAGATGAGAAGGCTAGATCATAGTTGGAAGCACATCCATAATCGCTTTCTG 1614
consensus_5045#1 TTTGGAGGGAAGATGAGAAGGCTAGATCATAGTTGGAAGCACATCCATAATCGCTTTCTG 375
************************************************************
consensus_5045#0 TAACA-AGATGGCAC-AAGGCTGTTACATATGTTAATCTTGAAGATGTACTACTAAATCC 1672
consensus_5045#1 TAACACAGATGGCACCAAGGCTGTTACATATGTTAATCTTGAAGATGTACTACTAAACCC 435
***** ********* ***************************************** **
consensus_5045#0 ATCACTGACATCTCTTTCTTGTGTAGCATGGCCCAATCAT--------- 1712
consensus_5045#1 CTC-CTGACATCTCTTTCTTGTGTAAAAAGGCCCAATCATTTTGATTAC 483
** ********************* * ***********
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||