cluster # 5048

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Oryza sativa
cluster # 5048 cluster # 5048 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5048#0 length = 576 sequences # 2

consensus_5048#1 length = 374 sequences # 1

consensusID : consensus_5048#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 576
fasta sequence

                              [TTTTTTTTTTTTTTTGAAAGCCTGAAACCATAGCTACCTTTCATAGCAGTTGAAACAATACTACAACTGTATAGACTTCACTGAACTAAATCGTAGCTCAGCAAGAATTATACGACATGGACGGTAAACCCTATCACCCCCTAAGCTACACATACGTAAACACCAAGAAAATTGCATCGAGGAAACTTACTTTCTATACCATGGCCCCTAAATCACTCTACTCCTTTGATTTCTAAAAGGTACTTTCAGAGGAAGGAACACACTGAAAAAACTCCAGATCTCCTCAGGGGAAGCTGGTTGGCGCAAACAGTTTGCTATCTTTCTCTTTGCCATCCTCAACAGAAAAAACAGAACTGTCCTCCTCCTTCACAGCTAAAAACACCAAGAGTGCAAGCAAGGGGTAGCTCACGGTAGTAAGCGCCCAATTCACAATCAGTTGCGAAATTAGGCTTGGCTTGTGGGTATCAATTTGCCATGCCACAGCCGCTCCAGCACTTTGCACTCCCTTATAGAACCCAACATATCTCCTGAGGATTTGGGGGGCGTTGGCAAGGGCCCCAATTATCCCCCCTTGGC]

[+] EMBL CA763641             [TTTTTTTTTTTTTTTGAAAGCCTGAAACCATAGCTACCTTTCATAGCAGTTGAAACAATACTACAACTGTATAGACTTCACTGAACTAAATCGTAGCTCAGCAAGAATTATACGACATGGACGGTAAACCCTATCACCCCCTAAGCTACACATACGTAAACACCAAGAAAATTGCATCGAGGAAACTTACTTTCTATACCATGGCCCCTAAATCACTCTACTCCTTTGATTTCTAAAAGGTACTTTCAGAGGAAGGAACACACTGAAAAAACTCCAGATCTCCTCAGGGGAAGCTGGTTGGCGCAAACAGTTTGCTATCTTTCTCTTTGCCATCCTCAACAGAAAAAACAGAACTGTCCTCCTCCTTCACAGCTAAAAACACCAAGAGTGCAAGCAAGGGGTAGCTCACGGTAGTAAGCGCCCAATTCACAATCAGTTGCGAAATTAGGCTTGGCTTGTGGGTATCAATTTGCCATGCCACAGCCGCTCCAGCACTTTGCACTCCCTTATAGAACCCAACATATCTCCTGAGGATTTGGGGGGCGTTGGCAAGGGCCCCAATTATCCCCCCTTGGC]
[+] EMBL CA763642             [TTTTTTTTTTTTTTTGAAAGCCTGAAACCATAGCTACCTTTCATAGCAGTTGAAACAATACTACAACTGTATAGACTTCACTGAACTAAATCGTAGCTCAGCAAGAATTATACGACATGGACGGTAAACCCTATCACCCCCTAAGCTACACATACGTAAACACCAAGAAAATTGCATCGAGGAAACTTACTTTCTATACCATGGCCCCTAAATCACTCTACTCCTTTGATTTCTAAAAGGTACTTTCAGAGGAAGGAACACACTGAAAAAACTCCAGATCTCCTCAGGGGAAGCTGGTTGGCGCAAACAGTTTGCTATCTTTCTCTTTGCCATCCTCAACAGAAAAAACAGAACTGTCCTCCTCCTTCACAGCTAAAAACACCAAGAGTGCAAGCAAGGGGTAGCTCACGGTAGTAAGCGCCCAATTCACAATCAGTTGCGAAATTAGGCTTGGCTTGTGGGTATCAATTTGCCATGCCACAGCCGCTCCAGCACTTTGCACTCCCTTATAGAACCCAACATATCTCCTGAGGATTTGGGGGGCGTTGGCAAGGGCCCCAATTATCCCCCCTTGGC]




>consensus_5048#0
TTTTTTTTTTTTTTTGAAAGCCTGAAACCATAGCTACCTTTCATAGCAGTTGAAACAATA
CTACAACTGTATAGACTTCACTGAACTAAATCGTAGCTCAGCAAGAATTATACGACATGG
ACGGTAAACCCTATCACCCCCTAAGCTACACATACGTAAACACCAAGAAAATTGCATCGA
GGAAACTTACTTTCTATACCATGGCCCCTAAATCACTCTACTCCTTTGATTTCTAAAAGG
TACTTTCAGAGGAAGGAACACACTGAAAAAACTCCAGATCTCCTCAGGGGAAGCTGGTTG
GCGCAAACAGTTTGCTATCTTTCTCTTTGCCATCCTCAACAGAAAAAACAGAACTGTCCT
CCTCCTTCACAGCTAAAAACACCAAGAGTGCAAGCAAGGGGTAGCTCACGGTAGTAAGCG
CCCAATTCACAATCAGTTGCGAAATTAGGCTTGGCTTGTGGGTATCAATTTGCCATGCCA
CAGCCGCTCCAGCACTTTGCACTCCCTTATAGAACCCAACATATCTCCTGAGGATTTGGG
GGGCGTTGGCAAGGGCCCCAATTATCCCCCCTTGGC

consensusID : consensus_5048#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 374
fasta sequence

                              [TTTTTTCGCAGATGAAAGCCTGAAACCATAGCTACCTTTCATAGCAGTTGAAACAATAAGCTACACATACGTAAACACCAAGAAAATTGCATCGAGGAAACTTACTTTCTATACCATGGCCCCTAAATCACTCTACTCCTTTGATTTCTAAAATGTACTTTCAAAGGAAGGAACACACTGAAAAAACTCCAGATCTCCTCAGTGGAAGCTGGTTGGTGCAGACAGTTTGCTATCTTTCTCTTTGCCATCCTCAACAGAAGAAACAGAACTGTCCTCCTCCTTCACAGCTAAGNAACGACCAAGAGTGCAAGCAGGGGTAGCTCACGGGAGTAAGCGCCCAATTCACAATCNAATTGCGAAATTAGGCGTTGTCT]

[-] EMBL AU086068             [TTTTTTCGCAGATGAAAGCCTGAAACCATAGCTACCTTTCATAGCAGTTGAAACAATAAGCTACACATACGTAAACACCAAGAAAATTGCATCGAGGAAACTTACTTTCTATACCATGGCCCCTAAATCACTCTACTCCTTTGATTTCTAAAATGTACTTTCAAAGGAAGGAACACACTGAAAAAACTCCAGATCTCCTCAGTGGAAGCTGGTTGGTGCAGACAGTTTGCTATCTTTCTCTTTGCCATCCTCAACAGAAGAAACAGAACTGTCCTCCTCCTTCACAGCTAAGNAACGACCAAGAGTGCAAGCAGGGGTAGCTCACGGGAGTAAGCGCCCAATTCACAATCNAATTGCGAAATTAGGCGTTGTCT]




>consensus_5048#1
TTTTTTCGCAGATGAAAGCCTGAAACCATAGCTACCTTTCATAGCAGTTGAAACAATAAG
CTACACATACGTAAACACCAAGAAAATTGCATCGAGGAAACTTACTTTCTATACCATGGC
CCCTAAATCACTCTACTCCTTTGATTTCTAAAATGTACTTTCAAAGGAAGGAACACACTG
AAAAAACTCCAGATCTCCTCAGTGGAAGCTGGTTGGTGCAGACAGTTTGCTATCTTTCTC
TTTGCCATCCTCAACAGAAGAAACAGAACTGTCCTCCTCCTTCACAGCTAAGNAACGACC
AAGAGTGCAAGCAGGGGTAGCTCACGGGAGTAAGCGCCCAATTCACAATCNAATTGCGAA
ATTAGGCGTTGTCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5048#0      TTTTTTTTTTTTTTTGAAAGCCTGAAACCATAGCTACCTTTCATAGCAGTTGAAACAATA 60
consensus_5048#1      ------------------------------------------------------------
                                                                                  

consensus_5048#0      CTACAACTGTATAGACTTCACTGAACTAAATCGTAGCTCAGCAAGAATTATACGACATGG 120
consensus_5048#1      -------------TTTTTTCGCAGATGAAAGCCTGA---AACCATAGCTACCTTTCATAG 44
                                      **      *  *** * *     * * * *  **     *** *

consensus_5048#0      ACGGTAAACCCTATCACCCCCTAAGCTACACATACGTAAACACCAAGAAAATTGCATCGA 180
consensus_5048#1      CAGTTGAAACAA---------TAAGCTACACATACGTAAACACCAAGAAAATTGCATCGA 95
                        * * ** *           ***************************************

consensus_5048#0      GGAAACTTACTTTCTATACCATGGCCCCTAAATCACTCTACTCCTTTGATTTCTAAAAGG 240
consensus_5048#1      GGAAACTTACTTTCTATACCATGGCCCCTAAATCACTCTACTCCTTTGATTTCTAAAATG 155
                      ********************************************************** *

consensus_5048#0      TACTTTCAGAGGAAGGAACACACTGAAAAAACTCCAGATCTCCTCAGGGGAAGCTGGTTG 300
consensus_5048#1      TACTTTCAAAGGAAGGAACACACTGAAAAAACTCCAGATCTCCTCAGTGGAAGCTGGTTG 215
                      ******** ************************************** ************

consensus_5048#0      GCGCAAACAGTTTGCTATCTTTCTCTTTGCCATCCTCAACAGAAAAAACAGAACTGTCCT 360
consensus_5048#1      GTGCAGACAGTTTGCTATCTTTCTCTTTGCCATCCTCAACAGAAGAAACAGAACTGTCCT 275
                      * *** ************************************** ***************

consensus_5048#0      CCTCCTTCACAGCTAAAAAC--ACCAAGAGTGCAAGCAAGGGGTAGCTCACGGTAGTAAG 418
consensus_5048#1      CCTCCTTCACAGCTAAGNAACGACCAAGAGTGCAAGCA-GGGGTAGCTCACGGGAGTAAG 334
                      ****************  *   **************** ************** ******

consensus_5048#0      CGCCCAATTCACAATCAG-TTGCGAAATTAGGCTTGGCTTGTGGGTATCAATTTGCCATG 477
consensus_5048#1      CGCCCAATTCACAATCNAATTGCGAAATTAGGCGTTGTCT-------------------- 374
                      ****************   ************** * *  *                    

consensus_5048#0      CCACAGCCGCTCCAGCACTTTGCACTCCCTTATAGAACCCAACATATCTCCTGAGGATTT 537
consensus_5048#1      ------------------------------------------------------------
                                                                                  

consensus_5048#0      GGGGGGCGTTGGCAAGGGCCCCAATTATCCCCCCTTGGC 576
consensus_5048#1      ---------------------------------------