cluster # 505

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Oryza sativa
cluster # 505 cluster # 505 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_505#0 length = 1197 sequences # 1

consensus_505#1 length = 278 sequences # 1

consensusID : consensus_505#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1197
fasta sequence

                              [TCTCTCACTCTCACTCTCACTCTCACTCAGCTCGAGCCACAGCCGAGAGAGAGCCATCCATGGCGGTGAGCAACAACATCACGGCGTGCGTCAACTTCCTGGCGCTGGTGTGCGCCGTCCCGGTGGTGGCCACGGGCGTCTGGTTCGCCTCCAAGCAGGGCGACGACTGCGCCCGCGTCGCGCGCTGGCCGCTCGCTATCCTCGGCGCCGCCCTCCTCCTCGTCGCCCTCGCCGGCTTCGCCGGCGCCTACTGGAACCGCCGGGGCCTCCTCGCCGCCTACCTCTTCGCCATGGCCGCGCTCATCACCCTCCTCCTCGCCCTCCTCGTCTTCGCCTTCGCCGTCACCCGCCCCTCCGGCGCCTACCCCGCCTTCGCCCGCGCCTACGACGACTACCGCCTCGACGGCTACTCCACCTGGCTGCGGGACCGCGTCGCCGGCGACCCTCGCCGGTGGGAGGGGATCAGGGCTTGCCTCGCCGCCTCCGACACCTGCAGGAAGCTGGCGCAGGAGAGCGTCTTCTTCATCACCCCCGAGCAGTTCTACCAATCACACCTCACCCCGCTCCAGTCGGGCTGCTGCAAGCCGCCGACGGTGTGCGGGTACGCGTACGTGAGCCCGACGGTGTGGGTGAACCCGGCGAACCCGGCTGCGGACGCGGACTGCGCCGCGTGGGGGAACGACCCGTCGCAGCTCTGCTACGAGTGCAGCTCCTGCAAGGCCGGGATGCTGGGCACCCTGCGGGAGCAGTGGCGCAGGGCCAACGTCGCCCTCGTCATCGCCACCGTCGCGCTCATCTTCTTCTACGTCATCGGCTGCAGCGCCTTCAAGAACGCGCAGACCGAGGACCTCTTCCGCCGCTACAAGTGGCGCAACTGATCGGCGCTGCTGTCTGATGATCAATCAGCTCCTCGCCGGTGCCGGTTTGCTTAACTTCTTGCTCTTGGCTCTTGCTACATAGTATCAGTATTATATCTGCTGATTAATTTTACAGTGCATTGTTCTGTTCTGAAGATTACTGGATGCTGCTAGTTTGTTTTGTTGATCTAGTGAGTACAATCTACGGGCTGGTTTCAAAGCTTAGCCAAATGTATATATGTTGCCGGCTTGTGTTGTTGGCACGGGTTGTCAAGTTTGTCATGGTCGTACCTACCGTCAGACTGAGTACTCTTTTGCTGTATTATTGATATAATCCGTG]

[+] EMBL AK070273             [TCTCTCACTCTCACTCTCACTCTCACTCAGCTCGAGCCACAGCCGAGAGAGAGCCATCCATGGCGGTGAGCAACAACATCACGGCGTGCGTCAACTTCCTGGCGCTGGTGTGCGCCGTCCCGGTGGTGGCCACGGGCGTCTGGTTCGCCTCCAAGCAGGGCGACGACTGCGCCCGCGTCGCGCGCTGGCCGCTCGCTATCCTCGGCGCCGCCCTCCTCCTCGTCGCCCTCGCCGGCTTCGCCGGCGCCTACTGGAACCGCCGGGGCCTCCTCGCCGCCTACCTCTTCGCCATGGCCGCGCTCATCACCCTCCTCCTCGCCCTCCTCGTCTTCGCCTTCGCCGTCACCCGCCCCTCCGGCGCCTACCCCGCCTTCGCCCGCGCCTACGACGACTACCGCCTCGACGGCTACTCCACCTGGCTGCGGGACCGCGTCGCCGGCGACCCTCGCCGGTGGGAGGGGATCAGGGCTTGCCTCGCCGCCTCCGACACCTGCAGGAAGCTGGCGCAGGAGAGCGTCTTCTTCATCACCCCCGAGCAGTTCTACCAATCACACCTCACCCCGCTCCAGTCGGGCTGCTGCAAGCCGCCGACGGTGTGCGGGTACGCGTACGTGAGCCCGACGGTGTGGGTGAACCCGGCGAACCCGGCTGCGGACGCGGACTGCGCCGCGTGGGGGAACGACCCGTCGCAGCTCTGCTACGAGTGCAGCTCCTGCAAGGCCGGGATGCTGGGCACCCTGCGGGAGCAGTGGCGCAGGGCCAACGTCGCCCTCGTCATCGCCACCGTCGCGCTCATCTTCTTCTACGTCATCGGCTGCAGCGCCTTCAAGAACGCGCAGACCGAGGACCTCTTCCGCCGCTACAAGTGGCGCAACTGATCGGCGCTGCTGTCTGATGATCAATCAGCTCCTCGCCGGTGCCGGTTTGCTTAACTTCTTGCTCTTGGCTCTTGCTACATAGTATCAGTATTATATCTGCTGATTAATTTTACAGTGCATTGTTCTGTTCTGAAGATTACTGGATGCTGCTAGTTTGTTTTGTTGATCTAGTGAGTACAATCTACGGGCTGGTTTCAAAGCTTAGCCAAATGTATATATGTTGCCGGCTTGTGTTGTTGGCACGGGTTGTCAAGTTTGTCATGGTCGTACCTACCGTCAGACTGAGTACTCTTTTGCTGTATTATTGATATAATCCGTG]




>consensus_505#0
TCTCTCACTCTCACTCTCACTCTCACTCAGCTCGAGCCACAGCCGAGAGAGAGCCATCCA
TGGCGGTGAGCAACAACATCACGGCGTGCGTCAACTTCCTGGCGCTGGTGTGCGCCGTCC
CGGTGGTGGCCACGGGCGTCTGGTTCGCCTCCAAGCAGGGCGACGACTGCGCCCGCGTCG
CGCGCTGGCCGCTCGCTATCCTCGGCGCCGCCCTCCTCCTCGTCGCCCTCGCCGGCTTCG
CCGGCGCCTACTGGAACCGCCGGGGCCTCCTCGCCGCCTACCTCTTCGCCATGGCCGCGC
TCATCACCCTCCTCCTCGCCCTCCTCGTCTTCGCCTTCGCCGTCACCCGCCCCTCCGGCG
CCTACCCCGCCTTCGCCCGCGCCTACGACGACTACCGCCTCGACGGCTACTCCACCTGGC
TGCGGGACCGCGTCGCCGGCGACCCTCGCCGGTGGGAGGGGATCAGGGCTTGCCTCGCCG
CCTCCGACACCTGCAGGAAGCTGGCGCAGGAGAGCGTCTTCTTCATCACCCCCGAGCAGT
TCTACCAATCACACCTCACCCCGCTCCAGTCGGGCTGCTGCAAGCCGCCGACGGTGTGCG
GGTACGCGTACGTGAGCCCGACGGTGTGGGTGAACCCGGCGAACCCGGCTGCGGACGCGG
ACTGCGCCGCGTGGGGGAACGACCCGTCGCAGCTCTGCTACGAGTGCAGCTCCTGCAAGG
CCGGGATGCTGGGCACCCTGCGGGAGCAGTGGCGCAGGGCCAACGTCGCCCTCGTCATCG
CCACCGTCGCGCTCATCTTCTTCTACGTCATCGGCTGCAGCGCCTTCAAGAACGCGCAGA
CCGAGGACCTCTTCCGCCGCTACAAGTGGCGCAACTGATCGGCGCTGCTGTCTGATGATC
AATCAGCTCCTCGCCGGTGCCGGTTTGCTTAACTTCTTGCTCTTGGCTCTTGCTACATAG
TATCAGTATTATATCTGCTGATTAATTTTACAGTGCATTGTTCTGTTCTGAAGATTACTG
GATGCTGCTAGTTTGTTTTGTTGATCTAGTGAGTACAATCTACGGGCTGGTTTCAAAGCT
TAGCCAAATGTATATATGTTGCCGGCTTGTGTTGTTGGCACGGGTTGTCAAGTTTGTCAT
GGTCGTACCTACCGTCAGACTGAGTACTCTTTTGCTGTATTATTGATATAATCCGTG

consensusID : consensus_505#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 278
fasta sequence

                              [CCTTGCTCTTGGCCTGCACATAGTATCAGTATTATATCTGTTGAATTAATTTTACAGTGCATTGTTCTGTTCTGAAAGATTACTGGGATGCTGCTAGTTTGTTTTGTTGATCTAGTGAAGTACAATCTACGGGGCTGGTTTCAAAAGCTTANCCAAATGTTATATATGTTTGCCGGCTTGTGTTTGTTGGCACGGGGTTGTCAAATTTGTCATGGTCCGTACCTACCCGTCCAGACTGANTACTCTTTTGCCTGTATTAATTGAATATAAGGCCGTGT]

[+] EMBL AA754611             [CCTTGCTCTTGGCCTGCACATAGTATCAGTATTATATCTGTTGAATTAATTTTACAGTGCATTGTTCTGTTCTGAAAGATTACTGGGATGCTGCTAGTTTGTTTTGTTGATCTAGTGAAGTACAATCTACGGGGCTGGTTTCAAAAGCTTANCCAAATGTTATATATGTTTGCCGGCTTGTGTTTGTTGGCACGGGGTTGTCAAATTTGTCATGGTCCGTACCTACCCGTCCAGACTGANTACTCTTTTGCCTGTATTAATTGAATATAAGGCCGTGT]




>consensus_505#1
CCTTGCTCTTGGCCTGCACATAGTATCAGTATTATATCTGTTGAATTAATTTTACAGTGC
ATTGTTCTGTTCTGAAAGATTACTGGGATGCTGCTAGTTTGTTTTGTTGATCTAGTGAAG
TACAATCTACGGGGCTGGTTTCAAAAGCTTANCCAAATGTTATATATGTTTGCCGGCTTG
TGTTTGTTGGCACGGGGTTGTCAAATTTGTCATGGTCCGTACCTACCCGTCCAGACTGAN
TACTCTTTTGCCTGTATTAATTGAATATAAGGCCGTGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_505#0      TCTCTCACTCTCACTCTCACTCTCACTCAGCTCGAGCCACAGCCGAGAGAGAGCCATCCA 60
consensus_505#1      ------------------------------------------------------------
                                                                                 

consensus_505#0      TGGCGGTGAGCAACAACATCACGGCGTGCGTCAACTTCCTGGCGCTGGTGTGCGCCGTCC 120
consensus_505#1      ------------------------------------------------------------
                                                                                 

consensus_505#0      CGGTGGTGGCCACGGGCGTCTGGTTCGCCTCCAAGCAGGGCGACGACTGCGCCCGCGTCG 180
consensus_505#1      ------------------------------------------------------------
                                                                                 

consensus_505#0      CGCGCTGGCCGCTCGCTATCCTCGGCGCCGCCCTCCTCCTCGTCGCCCTCGCCGGCTTCG 240
consensus_505#1      ------------------------------------------------------------
                                                                                 

consensus_505#0      CCGGCGCCTACTGGAACCGCCGGGGCCTCCTCGCCGCCTACCTCTTCGCCATGGCCGCGC 300
consensus_505#1      ------------------------------------------------------------
                                                                                 

consensus_505#0      TCATCACCCTCCTCCTCGCCCTCCTCGTCTTCGCCTTCGCCGTCACCCGCCCCTCCGGCG 360
consensus_505#1      ------------------------------------------------------------
                                                                                 

consensus_505#0      CCTACCCCGCCTTCGCCCGCGCCTACGACGACTACCGCCTCGACGGCTACTCCACCTGGC 420
consensus_505#1      ------------------------------------------------------------
                                                                                 

consensus_505#0      TGCGGGACCGCGTCGCCGGCGACCCTCGCCGGTGGGAGGGGATCAGGGCTTGCCTCGCCG 480
consensus_505#1      ------------------------------------------------------------
                                                                                 

consensus_505#0      CCTCCGACACCTGCAGGAAGCTGGCGCAGGAGAGCGTCTTCTTCATCACCCCCGAGCAGT 540
consensus_505#1      ------------------------------------------------------------
                                                                                 

consensus_505#0      TCTACCAATCACACCTCACCCCGCTCCAGTCGGGCTGCTGCAAGCCGCCGACGGTGTGCG 600
consensus_505#1      ------------------------------------------------------------
                                                                                 

consensus_505#0      GGTACGCGTACGTGAGCCCGACGGTGTGGGTGAACCCGGCGAACCCGGCTGCGGACGCGG 660
consensus_505#1      ------------------------------------------------------------
                                                                                 

consensus_505#0      ACTGCGCCGCGTGGGGGAACGACCCGTCGCAGCTCTGCTACGAGTGCAGCTCCTGCAAGG 720
consensus_505#1      ------------------------------------------------------------
                                                                                 

consensus_505#0      CCGGGATGCTGGGCACCCTGCGGGAGCAGTGGCGCAGGGCCAACGTCGCCCTCGTCATCG 780
consensus_505#1      ------------------------------------------------------------
                                                                                 

consensus_505#0      CCACCGTCGCGCTCATCTTCTTCTACGTCATCGGCTGCAGCGCCTTCAAGAACGCGCAGA 840
consensus_505#1      ------------------------------------------------------------
                                                                                 

consensus_505#0      CCGAGGACCTCTTCCGCCGCTACAAGTGGCGCAACTGATCGGCGCTGCTGTCTGATGATC 900
consensus_505#1      ------------------------------------------------------------
                                                                                 

consensus_505#0      AATCAGCTCCTCGCCGGTGCCGGTTTGCTTAACTTCTTGCTCTTGGCTCTTGCTACATAG 960
consensus_505#1      ----------------------------------CCTTGCTCTTGGCC--TGC-ACATAG 23
                                                        ************   *** ******

consensus_505#0      TATCAGTATTATATCTGCTGA-TTAATTTTACAGTGCATTGTTCTGTTCTGAA-GATTAC 1018
consensus_505#1      TATCAGTATTATATCTGTTGAATTAATTTTACAGTGCATTGTTCTGTTCTGAAAGATTAC 83
                     ***************** *** ******************************* ******

consensus_505#0      TGG-ATGCTGCTAGTTTGTTTTGTTGATCTAGTGA-GTACAATCTACGGG-CTGGTTTCA 1075
consensus_505#1      TGGGATGCTGCTAGTTTGTTTTGTTGATCTAGTGAAGTACAATCTACGGGGCTGGTTTCA 143
                     *** ******************************* ************** *********

consensus_505#0      AA-GCTTAGCCAAATGT-ATATATGTT-GCCGGCTTGTGTT-GTTGGCACGGG-TTGTCA 1130
consensus_505#1      AAAGCTTANCCAAATGTTATATATGTTTGCCGGCTTGTGTTTGTTGGCACGGGGTTGTCA 203
                     ** ***** ******** ********* ************* *********** ******

consensus_505#0      AGTTTGTCATGGTC-GTACCTACCG--TCAGACTGAGTACTCTTTTGC-TGTATTATT-- 1184
consensus_505#1      AATTTGTCATGGTCCGTACCTACCCGTCCAGACTGANTACTCTTTTGCCTGTATTAATTG 263
                     * ************ *********    ******** *********** ******* *  

consensus_505#0      GATATAAT-CCGTG- 1197
consensus_505#1      AATATAAGGCCGTGT 278
                      ******  *****