cluster # 5060

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Oryza sativa
cluster # 5060 cluster # 5060 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5060#0 length = 1042 sequences # 1

consensus_5060#1 length = 279 sequences # 1
consensus_5060#2 length = 95 sequences # 1

consensusID : consensus_5060#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1042
fasta sequence

                              [CCTCTCTCCCTCTCCTCTCCTCTCCGATCGATCCTTCCCCTCTCTCTCTCTCTCTCAATCCAGATAGGAAGGCGGCGAGCGAGAGCGACACGATGCAGGCGGTGAGGGAGGAGGAGGAGCAGGTGGTGGAGGAGGTGGTGAGGGCGGGGGCGGTGGCAGAGGAGGAGGAGGGGCCGGAGGAGAAGGAGGTGGCGATGGTCGGGGAGGAGATGGCGGAGGCAGAGCACGACGAGGAGGAGGCGGAGGCCGGGGCGTCGGCGAAGAAGAACCGGATCCAGGTCTCCACCAACAAGAAGCCACTCTACTTCTACGTCAACCTCGCCAAGAGGTACATGCAGAACTATGACGAAGTTGAGCTCTCTGCACTGGGAATGGCAATTGGCACGGTGGTGACTGTTGCTGAGATCCTCAAGAACAATGGCCTGGCCACTGAAAAGAAGATCCTGACATCAACCATTGGCACCAAGGATGAATCGAAGGGGCGGCTTGTCCGTAAAGCCAAGATTGAGATTCTTCTTTGTAAATCAGAAAACTTCAACAGTATAATGTCCAGCAAGAAATCAGACCGCCCGAAATCCGCCGAGGAAGAGATCAAGGTCTGATGATGAACACCAACTTCTGATCGATCAGAGCCTCCATGTCCAGAGGTTAACAAACCATGCTTGAGACAGTGGGAGGCAGCAGCAATGATCTGATTTTAGTAGTAACTAGGGGGTACCTTAGTCCTTGTCAAAGGAGGAATAGATCATAATATTGTCAGGCATGCATACTATGCAGGCAAAATTATGTCCTTTCCTCTTCCTTGCAGCTCTGTCCAACTGAAACCTTCAAAAGAAATTAAGCAAAATTTGCAACTGCGTCAGTACGGGGAGATGATGAAATTAGTGGATGTAGAAATAGAGTTTATCTCGGTCAGTCCCTAAGGCTGGGACTGGAGGAGTCCTATAATTAAGCTCTTACTTTTTCAGTTTGATGTTCCTTTGCTCATGTATGAAGCTTTTGGACAGAGACAGACAGGTCACTGTCATAATGGAAGGCTGAG]

[+] EMBL AK071524             [CCTCTCTCCCTCTCCTCTCCTCTCCGATCGATCCTTCCCCTCTCTCTCTCTCTCTCAATCCAGATAGGAAGGCGGCGAGCGAGAGCGACACGATGCAGGCGGTGAGGGAGGAGGAGGAGCAGGTGGTGGAGGAGGTGGTGAGGGCGGGGGCGGTGGCAGAGGAGGAGGAGGGGCCGGAGGAGAAGGAGGTGGCGATGGTCGGGGAGGAGATGGCGGAGGCAGAGCACGACGAGGAGGAGGCGGAGGCCGGGGCGTCGGCGAAGAAGAACCGGATCCAGGTCTCCACCAACAAGAAGCCACTCTACTTCTACGTCAACCTCGCCAAGAGGTACATGCAGAACTATGACGAAGTTGAGCTCTCTGCACTGGGAATGGCAATTGGCACGGTGGTGACTGTTGCTGAGATCCTCAAGAACAATGGCCTGGCCACTGAAAAGAAGATCCTGACATCAACCATTGGCACCAAGGATGAATCGAAGGGGCGGCTTGTCCGTAAAGCCAAGATTGAGATTCTTCTTTGTAAATCAGAAAACTTCAACAGTATAATGTCCAGCAAGAAATCAGACCGCCCGAAATCCGCCGAGGAAGAGATCAAGGTCTGATGATGAACACCAACTTCTGATCGATCAGAGCCTCCATGTCCAGAGGTTAACAAACCATGCTTGAGACAGTGGGAGGCAGCAGCAATGATCTGATTTTAGTAGTAACTAGGGGGTACCTTAGTCCTTGTCAAAGGAGGAATAGATCATAATATTGTCAGGCATGCATACTATGCAGGCAAAATTATGTCCTTTCCTCTTCCTTGCAGCTCTGTCCAACTGAAACCTTCAAAAGAAATTAAGCAAAATTTGCAACTGCGTCAGTACGGGGAGATGATGAAATTAGTGGATGTAGAAATAGAGTTTATCTCGGTCAGTCCCTAAGGCTGGGACTGGAGGAGTCCTATAATTAAGCTCTTACTTTTTCAGTTTGATGTTCCTTTGCTCATGTATGAAGCTTTTGGACAGAGACAGACAGGTCACTGTCATAATGGAAGGCTGAG]




>consensus_5060#0
CCTCTCTCCCTCTCCTCTCCTCTCCGATCGATCCTTCCCCTCTCTCTCTCTCTCTCAATC
CAGATAGGAAGGCGGCGAGCGAGAGCGACACGATGCAGGCGGTGAGGGAGGAGGAGGAGC
AGGTGGTGGAGGAGGTGGTGAGGGCGGGGGCGGTGGCAGAGGAGGAGGAGGGGCCGGAGG
AGAAGGAGGTGGCGATGGTCGGGGAGGAGATGGCGGAGGCAGAGCACGACGAGGAGGAGG
CGGAGGCCGGGGCGTCGGCGAAGAAGAACCGGATCCAGGTCTCCACCAACAAGAAGCCAC
TCTACTTCTACGTCAACCTCGCCAAGAGGTACATGCAGAACTATGACGAAGTTGAGCTCT
CTGCACTGGGAATGGCAATTGGCACGGTGGTGACTGTTGCTGAGATCCTCAAGAACAATG
GCCTGGCCACTGAAAAGAAGATCCTGACATCAACCATTGGCACCAAGGATGAATCGAAGG
GGCGGCTTGTCCGTAAAGCCAAGATTGAGATTCTTCTTTGTAAATCAGAAAACTTCAACA
GTATAATGTCCAGCAAGAAATCAGACCGCCCGAAATCCGCCGAGGAAGAGATCAAGGTCT
GATGATGAACACCAACTTCTGATCGATCAGAGCCTCCATGTCCAGAGGTTAACAAACCAT
GCTTGAGACAGTGGGAGGCAGCAGCAATGATCTGATTTTAGTAGTAACTAGGGGGTACCT
TAGTCCTTGTCAAAGGAGGAATAGATCATAATATTGTCAGGCATGCATACTATGCAGGCA
AAATTATGTCCTTTCCTCTTCCTTGCAGCTCTGTCCAACTGAAACCTTCAAAAGAAATTA
AGCAAAATTTGCAACTGCGTCAGTACGGGGAGATGATGAAATTAGTGGATGTAGAAATAG
AGTTTATCTCGGTCAGTCCCTAAGGCTGGGACTGGAGGAGTCCTATAATTAAGCTCTTAC
TTTTTCAGTTTGATGTTCCTTTGCTCATGTATGAAGCTTTTGGACAGAGACAGACAGGTC
ACTGTCATAATGGAAGGCTGAG

consensusID : consensus_5060#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 279
fasta sequence

                              [GACACTGACATGGACTGAGGAGTCCTATAATTAAGCTCTTACTTTTTCAGTTTGATGTTCCTTTGCTCATGTATGAAGCTTTTGGACAGAGACAGACAGGTCACTGTCATAATGGAAGGCTGAGGTTTCATGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTTTTTTCCCCTTACCTAAAAAAGGGGAAATTCCGGGCCCTAAAAAAA]

[+] EMBL CF321354             [GACACTGACATGGACTGAGGAGTCCTATAATTAAGCTCTTACTTTTTCAGTTTGATGTTCCTTTGCTCATGTATGAAGCTTTTGGACAGAGACAGACAGGTCACTGTCATAATGGAAGGCTGAGGTTTCATGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTTTTTTCCCCTTACCTAAAAAAGGGGAAATTCCGGGCCCTAAAAAAA]




>consensus_5060#1
GACACTGACATGGACTGAGGAGTCCTATAATTAAGCTCTTACTTTTTCAGTTTGATGTTC
CTTTGCTCATGTATGAAGCTTTTGGACAGAGACAGACAGGTCACTGTCATAATGGAAGGC
TGAGGTTTCATGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTTTTTTCC
CCTTACCTAAAAAAGGGGAAATTCCGGGCCCTAAAAAAA

consensusID : consensus_5060#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 95
fasta sequence

                              [TTTTTTTTTTTTTCACATGAAACCTCACCCTTCCTTTATGACAGTGACCTGTCTGTCTCTGTCCAAAAGCTTCATACCCCCTTGTCTCGTCCTCT]

[+] EMBL CA760439             [TTTTTTTTTTTTTCACATGAAACCTCACCCTTCCTTTATGACAGTGACCTGTCTGTCTCTGTCCAAAAGCTTCATACCCCCTTGTCTCGTCCTCT]




>consensus_5060#2
TTTTTTTTTTTTTCACATGAAACCTCACCCTTCCTTTATGACAGTGACCTGTCTGTCTCT
GTCCAAAAGCTTCATACCCCCTTGTCTCGTCCTCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5060#0      CCTCTCTCCCTCTCCTCTCCTCTCCGATCGATCCTTCCCCTCTCTCTCTCTCTCTCAATC 60
consensus_5060#1      ------------------------------------------------------------
consensus_5060#2      ------------------------------------------------------------
                                                                                  

consensus_5060#0      CAGATAGGAAGGCGGCGAGCGAGAGCGACACGATGCAGGCGGTGAGGGAGGAGGAGGAGC 120
consensus_5060#1      ------------------------------------------------------------
consensus_5060#2      ------------------------------------------------------------
                                                                                  

consensus_5060#0      AGGTGGTGGAGGAGGTGGTGAGGGCGGGGGCGGTGGCAGAGGAGGAGGAGGGGCCGGAGG 180
consensus_5060#1      ------------------------------------------------------------
consensus_5060#2      ------------------------------------------------------------
                                                                                  

consensus_5060#0      AGAAGGAGGTGGCGATGGTCGGGGAGGAGATGGCGGAGGCAGAGCACGACGAGGAGGAGG 240
consensus_5060#1      ------------------------------------------------------------
consensus_5060#2      ------------------------------------------------------------
                                                                                  

consensus_5060#0      CGGAGGCCGGGGCGTCGGCGAAGAAGAACCGGATCCAGGTCTCCACCAACAAGAAGCCAC 300
consensus_5060#1      ------------------------------------------------------------
consensus_5060#2      ------------------------------------------------------------
                                                                                  

consensus_5060#0      TCTACTTCTACGTCAACCTCGCCAAGAGGTACATGCAGAACTATGACGAAGTTGAGCTCT 360
consensus_5060#1      ------------------------------------------------------------
consensus_5060#2      ------------------------------------------------------------
                                                                                  

consensus_5060#0      CTGCACTGGGAATGGCAATTGGCACGGTGGTGACTGTTGCTGAGATCCTCAAGAACAATG 420
consensus_5060#1      ------------------------------------------------------------
consensus_5060#2      ------------------------------------------------------------
                                                                                  

consensus_5060#0      GCCTGGCCACTGAAAAGAAGATCCTGACATCAACCATTGGCACCAAGGATGAATCGAAGG 480
consensus_5060#1      ------------------------------------------------------------
consensus_5060#2      ------------------------------------------------------------
                                                                                  

consensus_5060#0      GGCGGCTTGTCCGTAAAGCCAAGATTGAGATTCTTCTTTGTAAATCAGAAAACTTCAACA 540
consensus_5060#1      ------------------------------------------------------------
consensus_5060#2      ------------------------------------------------------------
                                                                                  

consensus_5060#0      GTATAATGTCCAGCAAGAAATCAGACCGCCCGAAATCCGCCGAGGAAGAGATCAAGGTCT 600
consensus_5060#1      -----------GACACTGACATGGACTGA--GGAGTCCTATAATTAAGCTCTTACTTTTT 47
consensus_5060#2      ------------------------------------------------TTTTTTTTTTTT 12
                                                                         *     * *

consensus_5060#0      GATGATGAACACCAACTTCTGATCGATCAGAGCCTCCATGTCCAGAGGTTAACAAACCAT 660
consensus_5060#1      CAGTTTGATGTTCCTTTGCTCATGTAT-GAAGCTTT--TGGACAGAGACAGACAGGTCAC 104
consensus_5060#2      TCACATGAAACCTCACCCTTCCTTTATGACAGTGACC-TGTCTGTCTCTGTCCAAAAGCT 71
                           ***           *  *  **   **      **            **      

consensus_5060#0      GCTTGAGACAGTGGGAGGCAGCAGCAATGATCTGATTTTAGTAGTAACTAGGGGGTACCT 720
consensus_5060#1      ---TGTCATAATGGAAGGCTG-AGGTTTCATGTGAAAAAAAAAAAAAAAAAAAAAAAAAA 160
consensus_5060#2      TCATACCCCCTTGTCTCGTCCTCT------------------------------------ 95
                         *       **    *                                          

consensus_5060#0      TAGTCCTTGTCAAAGGAGGAATAGATCATAATATTGTCAGGCATGCATACTATGCAGGCA 780
consensus_5060#1      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 220
consensus_5060#2      ------------------------------------------------------------
                                                                                  

consensus_5060#0      AAATTATGTCCTTTCCTCTTCCTTGCAGCTCTGTCCAACTGAAACCTTCAAAAGAAATTA 840
consensus_5060#1      AAAAAAAACCCCTTTTTTCCCCTTAC----CTAAAAAAGGGGAAATTCCG---GGCCCTA 273
consensus_5060#2      ------------------------------------------------------------
                                                                                  

consensus_5060#0      AGCAAAATTTGCAACTGCGTCAGTACGGGGAGATGATGAAATTAGTGGATGTAGAAATAG 900
consensus_5060#1      AAAAAA------------------------------------------------------ 279
consensus_5060#2      ------------------------------------------------------------
                                                                                  

consensus_5060#0      AGTTTATCTCGGTCAGTCCCTAAGGCTGGGACTGGAGGAGTCCTATAATTAAGCTCTTAC 960
consensus_5060#1      ------------------------------------------------------------
consensus_5060#2      ------------------------------------------------------------
                                                                                  

consensus_5060#0      TTTTTCAGTTTGATGTTCCTTTGCTCATGTATGAAGCTTTTGGACAGAGACAGACAGGTC 1020
consensus_5060#1      ------------------------------------------------------------
consensus_5060#2      ------------------------------------------------------------
                                                                                  

consensus_5060#0      ACTGTCATAATGGAAGGCTGAG 1042
consensus_5060#1      ----------------------
consensus_5060#2      ----------------------