cluster # 5067

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Oryza sativa
cluster # 5067 cluster # 5067 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5067#0 length = 360 sequences # 1

consensus_5067#1 length = 325 sequences # 2

consensusID : consensus_5067#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 360
fasta sequence

                              [AAAGGGATGATGCAATTGGCTGAGAACCTTGCGATAAAAGAAAGGGATGGCTGTGTATGGAATCACTCACCTATTGCTTCCGAATTATACGTATCCGCGCGATTAATGTTTGTGGGTTTCGATGTGCAAAGCAAACCATTTGCTGATTGGGAAACATTGCCTGATGAATGGAATTGCCTTGAGGGAACCTGGTGATGAATGAAATGGGAATGATGACCCGAATTGGTGGATGCAATGCAAATGATTGGCTAAGTGCCTGGTATTTACTACCGCTCGGAATTAGACCATAAAGGAATTTCTATCTACACCGGGACTATAATATCAGATTGGGGAGGAAGATTGGAATTACATTGATAAAAA]

[+] EMBL BI798915             [AAAGGGATGATGCAATTGGCTGAGAACCTTGCGATAAAAGAAAGGGATGGCTGTGTATGGAATCACTCACCTATTGCTTCCGAATTATACGTATCCGCGCGATTAATGTTTGTGGGTTTCGATGTGCAAAGCAAACCATTTGCTGATTGGGAAACATTGCCTGATGAATGGAATTGCCTTGAGGGAACCTGGTGATGAATGAAATGGGAATGATGACCCGAATTGGTGGATGCAATGCAAATGATTGGCTAAGTGCCTGGTATTTACTACCGCTCGGAATTAGACCATAAAGGAATTTCTATCTACACCGGGACTATAATATCAGATTGGGGAGGAAGATTGGAATTACATTGATAAAAA]




>consensus_5067#0
AAAGGGATGATGCAATTGGCTGAGAACCTTGCGATAAAAGAAAGGGATGGCTGTGTATGG
AATCACTCACCTATTGCTTCCGAATTATACGTATCCGCGCGATTAATGTTTGTGGGTTTC
GATGTGCAAAGCAAACCATTTGCTGATTGGGAAACATTGCCTGATGAATGGAATTGCCTT
GAGGGAACCTGGTGATGAATGAAATGGGAATGATGACCCGAATTGGTGGATGCAATGCAA
ATGATTGGCTAAGTGCCTGGTATTTACTACCGCTCGGAATTAGACCATAAAGGAATTTCT
ATCTACACCGGGACTATAATATCAGATTGGGGAGGAAGATTGGAATTACATTGATAAAAA

consensusID : consensus_5067#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 325
fasta sequence

                              [TTTTTATCAATTGCTAGAACCTTCGATAAAAGAAAGGGATGCTGTGTATGAATCACTCACCTATTCTTCCGAATTATACGTATCCGCGCGATTAATTTTTGGTTTCGATGTGCAAAAGCAAACCATTTCTATTGGAAACATTCCTATAATGAATTCCTTAGGAACCTTTATAATAAATGGAATATACCGAATTGTGATCAATCAAATATTGCTAAGTCCTGGTATTTACTACCGCTCGGAATTAGACCATAAAGGAATTTCTATCTACACCGGGACTATAATATCAGATTGGGGAGGAAGATTGGAATTAGCAATTGATAAAAAA]

[-] EMBL AU172329             [TTTTTATCAATTGCTAGAACCTTCGATAAAAGAAAGGGATGCTGTGTATGAATCACTCACCTATTCTTCCGAATTATACGTATCCGCGCGATTAATTTTTGGTTTCGATGTGCAAAAGCAAACCATTTCTATTGGAAACATTCCTATAATGAATTCCTTAGGAACCTTTATAATAAATGGAATATACCGAATTGTGATCAATCAAATATTGCTAAGTCCTGGTATTTACTACCGCTCGGAATTAGACCATAAAGGAATTTCTATCTACACCGGGACTATAATATCAGATTGGGGAGGAAGATTGGAA                  ]
[+] EMBL BI796832             [                                        GCTGTGTATGAATCACTCACCTATTCTTCCGAATTATACGTATCCGCGCGATTAATTTTTGGTTTCGATGTGCAAAAGCAAACCATTTCTATTGGAAACATTCCTATAATGAATTCCTTAGGAACCTTTATAATAAATGGAATATACCGAATTGTGATCAATCAAATATTGCTAAGTCCTGGTATTTACTACCGCTCGGAATTAGACCATAAAGGAATTTCTATCTACACCGGGACTATAATATCAGATTGGGGAGGAAGATTGGAATTAGCAATTGATAAAAAA]




>consensus_5067#1
TTTTTATCAATTGCTAGAACCTTCGATAAAAGAAAGGGATGCTGTGTATGAATCACTCAC
CTATTCTTCCGAATTATACGTATCCGCGCGATTAATTTTTGGTTTCGATGTGCAAAAGCA
AACCATTTCTATTGGAAACATTCCTATAATGAATTCCTTAGGAACCTTTATAATAAATGG
AATATACCGAATTGTGATCAATCAAATATTGCTAAGTCCTGGTATTTACTACCGCTCGGA
ATTAGACCATAAAGGAATTTCTATCTACACCGGGACTATAATATCAGATTGGGGAGGAAG
ATTGGAATTAGCAATTGATAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5067#0      AAAGGGATGATGCAATTGGCTGAGAACCTTGCGATAAAAGAAAGGGATGGCTGTGTATGG 60
consensus_5067#1      ------TTTTTATCAATTGCT-AGAACCTT-CGATAAAAGAAAGGGATG-CTGTGTATG- 50
                             *  *   * * *** ******** ****************** ********* 

consensus_5067#0      AATCACTCACCTATTGCTTCCGAATTATACGTATCCGCGCGATTAATGTTTGTGGGTTTC 120
consensus_5067#1      AATCACTCACCTATT-CTTCCGAATTATACGTATCCGCGCGATTAATTTTTG---GTTTC 106
                      *************** ******************************* ****   *****

consensus_5067#0      GATGTGCAAA-GCAAACCATTTGCTGATTGGGAAACATTGCC-TGATGAATGGAATTGCC 178
consensus_5067#1      GATGTGCAAAAGCAAACCATTTCT--ATTGG-AAACATTCCTATAATGAAT-------TC 156
                      ********** ***********    ***** ******* *  * ******        *

consensus_5067#0      TTGAGGGAACCTGGTGATGAATGAAATGGGAATGATGACCCGAATTGGTGGATGCAATGC 238
consensus_5067#1      CTTAGGAACCTTTATAATAAATGGAATATA---------CCGAATTG--TGAT-CAAT-C 203
                       * *** * * *  * ** **** ***            ********   *** **** *

consensus_5067#0      AAATGATTGGCTAAGTGCCTGGTATTTACTACCGCTCGGAATTAGACCATAAAGGAATTT 298
consensus_5067#1      AAATATT--GCTAAGT-CCTGGTATTTACTACCGCTCGGAATTAGACCATAAAGGAATTT 260
                      ****  *  ******* *******************************************

consensus_5067#0      CTATCTACACCGGGACTATAATATCAGATTGGGGAGGAAGATTGGAATTAC--ATTGATA 356
consensus_5067#1      CTATCTACACCGGGACTATAATATCAGATTGGGGAGGAAGATTGGAATTAGCAATTGATA 320
                      **************************************************   *******

consensus_5067#0      AAAA- 360
consensus_5067#1      AAAAA 325
                      ****