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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5072#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1506 fasta sequence
[TGTAAACAGGTCCTCGTTGGTTTTTGATTTTATCCGATATAACAACGGACTCAGCGTTGGACCCACATAGTTTCCACACGTTGGCCTCTCCTTCCCCTCCCTTCTCCACCTCTCTTCCTCTTTCCTCTTCTTTTCATTGGCAGCCTAGCCGGCGTGTGGAGAGGAGGCCGGTGGGGGAGGCAGCGGCAGTGACGACGCGGTGACGGGCGACGAGCGGGAGCCCCCCCCCCACACCGCCGCCACCGCCGTCGCCGACGGCGCGGGCGCCAGATCCCACCGCCATGGCTCCTCGTCGATCCCCGGCGCTGGTGGCGGAGACGACCGGCGGAGGCGGGTCGACGCCAACGAGGAGAGGAGCGGCGCGGCGGAGGCTGCCCAAGGTGACGCCGCGGTGGGTGGAGGTGGTCCTGTGATCAATGGGAACTCGGCGATGGCTGGACTCCAGCCGCGATGTCGGGGTGGCCTCGCCCCAGGTGTTGCCGACAACCAGCGGGAGGCGCAATCGGGTGATGACGACGAGAAAAAAAATCGGGTGGCCGCCCCCCGAAGAAATCCACCGCAGCCGCTGGCGCACGTCCCCGGGCTGGTTGACCTCAACGTCCTTGGACCGTCGGCCGGTGCCCGGTGACAGCCTGGCCACCACGCTCGCTGGTCCCGCCGAGTTGCCGCCCCGCCATCCTCCGCGTCCCGACAACTCCACGCCGACCGCCGCCGACTCCCGCCGGTCTATCCCCTCTGCGCCGACCTCAGCGTCCACCTCCACTCGCGTTGCTCCAGGGAGAGGTCCACCACCGGTCTCCATAGCCACCCGGGGGAATCTGTCTCGCCACCGCATCCGGCGGGCTCGTGGCGCCACCATCGCTTAAGCTCACCACGCCGCCGGACGCCGGATCTCCTCCGCCGCTGACCGGGTCGTGGTCCCCTGGCCGTCGGCTCTCTCTCTCTCCGGTGCTTGAGTGCTTCTCTATGCAGCAGGAGTGAGAGGCCAAGTCTTGAGGGGTCTGTGGACTTGGTCTATGGAGGCTATCCAACAAAGGGAGGGGAAGAAGAGGCTGACATTTGGAACTCACGTGGGTTCTACGCTGAGTTGAGGGATGCGCTGAATCCGGTTTTGCGGTTCAAGGACGATTTTATAACTCGATGATAAGTTGAGGCACCTTCGGTGTACTTTTTCCCACCCCCCACAGGCCACGGTACCCCACCTCGCGACGCCGGCCCAGATTAGCTACCGCACCGGGCGAAGTGGAAGCCGAAGCCCACATGCACCTTTTTGCCGGGCTGGCTTGGTGCGCGCGTTGACGCGTCCATCGCGTGGGGAAAATACACTTGTGGGCTTTCCGGTTCTGGACTGGAATAAACCTCTCACCGAAAACTTCATGGGCCTTACCACAGAAACATATGCAGGGTCCGAGAGGTGCACAGGTACCCGCTCCAAAACATAAAACATATAACCTATTATTATCAGGTTGGATATTAACTAATAAGTAGTCTCCATATTCGTAGTAT]
[-] EMBL AK111388 [TGTAAACAGGTCCTCGTTGGTTTTTGATTTTATCCGATATAACAACGGACTCAGCGTTGGACCCACATAGTTTCCACACGTTGGCCTCTCCTTCCCCTCCCTTCTCCACCTCTCTTCCTCTTTCCTCTTCTTTTCATTGGCAGCCTAGCCGGCGTGTGGAGAGGAGGCCGGTGGGGGAGGCAGCGGCAGTGACGACGCGGTGACGGGCGACGAGCGGGAGCCCCCCCCCCACACCGCCGCCACCGCCGTCGCCGACGGCGCGGGCGCCAGATCCCACCGCCATGGCTCCTCGTCGATCCCCGGCGCTGGTGGCGGAGACGACCGGCGGAGGCGGGTCGACGCCAACGAGGAGAGGAGCGGCGCGGCGGAGGCTGCCCAAGGTGACGCCGCGGTGGGTGGAGGTGGTCCTGTGATCAATGGGAACTCGGCGATGGCTGGACTCCAGCCGCGATGTCGGGGTGGCCTCGCCCCAGGTGTTGCCGACAACCAGCGGGAGGCGCAATCGGGTGATGACGACGAGAAAAAAAATCGGGTGGCCGCCCCCCGAAGAAATCCACCGCAGCCGCTGGCGCACGTCCCCGGGCTGGTTGACCTCAACGTCCTTGGACCGTCGGCCGGTGCCCGGTGACAGCCTGGCCACCACGCTCGCTGGTCCCGCCGAGTTGCCGCCCCGCCATCCTCCGCGTCCCGACAACTCCACGCCGACCGCCGCCGACTCCCGCCGGTCTATCCCCTCTGCGCCGACCTCAGCGTCCACCTCCACTCGCGTTGCTCCAGGGAGAGGTCCACCACCGGTCTCCATAGCCACCCGGGGGAATCTGTCTCGCCACCGCATCCGGCGGGCTCGTGGCGCCACCATCGCTTAAGCTCACCACGCCGCCGGACGCCGGATCTCCTCCGCCGCTGACCGGGTCGTGGTCCCCTGGCCGTCGGCTCTCTCTCTCTCCGGTGCTTGAGTGCTTCTCTATGCAGCAGGAGTGAGAGGCCAAGTCTTGAGGGGTCTGTGGACTTGGTCTATGGAGGCTATCCAACAAAGGGAGGGGAAGAAGAGGCTGACATTTGGAACTCACGTGGGTTCTACGCTGAGTTGAG ]
[+] EMBL AK109717 [ ACACGTTGGCCTCTCCTTCCCCTCCCTTCTCCACCTCTCTTCCTCTTTCCTCTTCTTTTCATTGGCAGCCTAGCCGGCGTGTGGAGAGGAGGCCGGTGGGGGAGGCAGCGGCAGTGACGACGCGGTGACGGGCGACGAGCGGGAGCCCCCCCCCCACACCGCCGCCACCGCCGTCGCCGACGGCGCGGGCGCCAGATCCCACCGCCATGGCTCCTCGTCGATCCCCGGCGCTGGTGGCGGAGACGACCGGCGGAGGCGGGTCGACGCCAACGAGGAGAGGAGCGGCGCGGCGGAGGCTGCCCAAGGTGACGCCGCGGTGGGTGGAGGTGGTCCTGTGATCAATGGGAACTCGGCGATGGCTGGACTCCAGCCGCGATGTCGGGGTGGCCTCGCCCCAGGTGTTGCCGACAACCAGCGGGAGGCGCAATCGGGTGATGACGACGAGAAAAAAAATCGGGTGGCCGCCCCCCGAAGAAATCCACCGCAGCCGCTGGCGCACGTCCCCGGGCTGGTTGACCTCAACGTCCTTGGACCGTCGGCCGGTGCCCGGTGACAGCCTGGCCACCACGCTCGCTGGTCCCGCCGAGTTGCCGCCCCGCCATCCTCCGCGTCCCGACAACTCCGCGCCGACCGCCGCCGACTCCCGCCGGTCTATCCCCTCTGCGCCGACCTCAGCGTCCACCTCCACTCGCGTTGCTCCAGGGAGAGGTCCACCACCGGTCTCCATAGCCACCCGGGGGAATCTGTCTCGCCACCGCATCCGGCGGGCTCGTGGCGCCACCATCGCTTAAGCTCACCACGCCGCCGGACGCCGGATCTCCTCCGCCGCTGACCGGGTCGTGGTCCCCTGGCCGTCGGCTCTCTCTCTCTCCGGTGCTTGAGTGCTTCTCTATGCAGCAGGAGTGAGAGGCCAAGTCTTGAGGGGTCTGTGGACTTGGTCTATGGAGGCTATCCAACAAAGGGAGGGGAAGAAGAGGCTGACATTTGGAACTCACGTGGGTTCTACGCTGAGTTGAGGGATGCGCTGAATCCGGTTTTGCGGTTCAAGGACGATTTTATAACTCGATGATAAGTTGAGGCACCTTCGGTGTACTTTTTCCCACCCCCCACAGGCCACGGTACCCCACCTCGCGACGCCGGCCCAGATTAGCTACCGCACCGGGCGAAGTGGAAGCCGAAGCCCACATGCACCTTTTTGCCGGGCTGGCTTGGTGCGCGCGTTGACGCGTCCATCGCGTGGGGAAAATACACTTGTGGGCTTTCCGGTTCTGGACTGGAATAAACCTCTCACCGAAAACTTCATGGGCCTTACCACAGAAACATATGCAGGGTCCGAGAGGTGCACAGGTACCCGCTCCAAAACATAAAACATATAACCTATTATTATCAGGTTGGATATTAACTAATAAGTAGTCTCCATATTCGTAGTAT]
consensusID : consensus_5072#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 615 fasta sequence
[TGGCCACCACGCTCGCTGGTCCCGCCGAGTTGCCGCCCCGCCATCCTCCGCGTCCCGACAACTCCGCGCCGACCGCCGCCGACTCCCGCCGGTCTATCCCCTCTGCGCCGACCTCAGCGTCCACCTCCACTCGCGTTGCTCCAGGGAGAGGTCCACCACCGGTCTCCATAGCCACCCGGGGGAATCTGTCTCGCCACCGCATCCGGCGGGCTCGTGGCGCCACCGTCGCTTAAGCTCACCACGCCGCCGGACGCCGGATCTCCTCCGCCGCTGACCGGGTCGTGGTCCCCTGGCCGTCGGCTCTCTCTCTCTCTCCGGTGCTTGAGTGCTTCTCTATGCAGCAGGAGTGAGAGGCCAAGTCTTGAGGGGTCTGTGGACTTGGTCTATGGAGGCTATCCAACAAAGGGAGGGGAAGAAGAGGCTGACATGTGGAACTCACGTAGGTACCACGCTGAGTCAGCTGTCATGTTGGATAAAATCGAAGTCAAAAACCAACAAGAAATTTAGTTTGCACTGGTTTTATAAGTTGAGGGATGCGTTGTATCCGGTTTTGCGGTTCAAGGACGATTTTGTAACTCGATGGTNNAAAAAAAAAAAAAAAAANAANNNNNNANN]
[+] EMBL CA756722 [TGGCCACCACGCTCGCTGGTCCCGCCGAGTTGCCGCCCCGCCATCCTCCGCGTCCCGACAACTCCGCGCCGACCGCCGCCGACTCCCGCCGGTCTATCCCCTCTGCGCCGACCTCAGCGTCCACCTCCACTCGCGTTGCTCCAGGGAGAGGTCCACCACCGGTCTCCATAGCCACCCGGGGGAATCTGTCTCGCCACCGCATCCGGCGGGCTCGTGGCGCCACCGTCGCTTAAGCTCACCACGCCGCCGGACGCCGGATCTCCTCCGCCGCTGACCGGGTCGTGGTCCCCTGGCCGTCGGCTCTCTCTCTCTCTCCGGTGCTTGAGTGCTTCTCTATGCAGCAGGAGTGAGAGGCCAAGTCTTGAGGGGTCTGTGGACTTGGTCTATGGAGGCTATCCAACAAAGGGAGGGGAAGAAGAGGCTGACATGTGGAACTCACGTAGGTACCACGCTGAGTCAGCTGTCATGTTGGATAAAATCGAAGTCAAAAACCAACAAGAAATTTAGTTTGCACTGGTTTTATAAGTTGAGGGATGCGTTGTATCCGGTTTTGCGGTTCAAGGACGATTTTGTAACTCGATGGTNNAAAAAAAAAAAAAAAAANAANNNNNNANN]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5072#0 TGTAAACAGGTCCTCGTTGGTTTTTGATTTTATCCGATATAACAACGGACTCAGCGTTGG 60
consensus_5072#1 ------------------------------------------------------------
consensus_5072#0 ACCCACATAGTTTCCACACGTTGGCCTCTCCTTCCCCTCCCTTCTCCACCTCTCTTCCTC 120
consensus_5072#1 ------------------------------------------------------------
consensus_5072#0 TTTCCTCTTCTTTTCATTGGCAGCCTAGCCGGCGTGTGGAGAGGAGGCCGGTGGGGGAGG 180
consensus_5072#1 ------------------------------------------------------------
consensus_5072#0 CAGCGGCAGTGACGACGCGGTGACGGGCGACGAGCGGGAGCCCCCCCCCCACACCGCCGC 240
consensus_5072#1 ------------------------------------------------------------
consensus_5072#0 CACCGCCGTCGCCGACGGCGCGGGCGCCAGATCCCACCGCCATGGCTCCTCGTCGATCCC 300
consensus_5072#1 ------------------------------------------------------------
consensus_5072#0 CGGCGCTGGTGGCGGAGACGACCGGCGGAGGCGGGTCGACGCCAACGAGGAGAGGAGCGG 360
consensus_5072#1 ------------------------------------------------------------
consensus_5072#0 CGCGGCGGAGGCTGCCCAAGGTGACGCCGCGGTGGGTGGAGGTGGTCCTGTGATCAATGG 420
consensus_5072#1 ------------------------------------------------------------
consensus_5072#0 GAACTCGGCGATGGCTGGACTCCAGCCGCGATGTCGGGGTGGCCTCGCCCCAGGTGTTGC 480
consensus_5072#1 ------------------------------------------------------------
consensus_5072#0 CGACAACCAGCGGGAGGCGCAATCGGGTGATGACGACGAGAAAAAAAATCGGGTGGCCGC 540
consensus_5072#1 ------------------------------------------------------------
consensus_5072#0 CCCCCGAAGAAATCCACCGCAGCCGCTGGCGCACGTCCCCGGGCTGGTTGACCTCAACGT 600
consensus_5072#1 ------------------------------------------------------------
consensus_5072#0 CCTTGGACCGTCGGCCGGTGCCCGGTGACAGCCTGGCCACCACGCTCGCTGGTCCCGCCG 660
consensus_5072#1 ---------------------------------TGGCCACCACGCTCGCTGGTCCCGCCG 27
***************************
consensus_5072#0 AGTTGCCGCCCCGCCATCCTCCGCGTCCCGACAACTCCACGCCGACCGCCGCCGACTCCC 720
consensus_5072#1 AGTTGCCGCCCCGCCATCCTCCGCGTCCCGACAACTCCGCGCCGACCGCCGCCGACTCCC 87
************************************** *********************
consensus_5072#0 GCCGGTCTATCCCCTCTGCGCCGACCTCAGCGTCCACCTCCACTCGCGTTGCTCCAGGGA 780
consensus_5072#1 GCCGGTCTATCCCCTCTGCGCCGACCTCAGCGTCCACCTCCACTCGCGTTGCTCCAGGGA 147
************************************************************
consensus_5072#0 GAGGTCCACCACCGGTCTCCATAGCCACCCGGGGGAATCTGTCTCGCCACCGCATCCGGC 840
consensus_5072#1 GAGGTCCACCACCGGTCTCCATAGCCACCCGGGGGAATCTGTCTCGCCACCGCATCCGGC 207
************************************************************
consensus_5072#0 GGGCTCGTGGCGCCACCATCGCTTAAGCTCACCACGCCGCCGGACGCCGGATCTCCTCCG 900
consensus_5072#1 GGGCTCGTGGCGCCACCGTCGCTTAAGCTCACCACGCCGCCGGACGCCGGATCTCCTCCG 267
***************** ******************************************
consensus_5072#0 CCGCTGACCGGGTCGTGGTCCCCTGGCCGTCGGCTCTCTCTCTCTC--CGGTGCTTGAGT 958
consensus_5072#1 CCGCTGACCGGGTCGTGGTCCCCTGGCCGTCGGCTCTCTCTCTCTCTCCGGTGCTTGAGT 327
********************************************** ************
consensus_5072#0 GCTTCTCTATGCAGCAGGAGTGAGAGGCCAAGTCTTGAGGGGTCTGTGGACTTGGTCTAT 1018
consensus_5072#1 GCTTCTCTATGCAGCAGGAGTGAGAGGCCAAGTCTTGAGGGGTCTGTGGACTTGGTCTAT 387
************************************************************
consensus_5072#0 GGAGGCTATCCAACAAAGGGAGGGGAAGAAGAGGCTGACATTTGGAACTCACGTGGGTTC 1078
consensus_5072#1 GGAGGCTATCCAACAAAGGGAGGGGAAGAAGAGGCTGACATGTGGAACTCACGTAGGTAC 447
***************************************** ************ *** *
consensus_5072#0 TACGCTGAGTTGAGGGATGCGCTGAATCCGGTTTTGCGGTTCAAGGACGATTTTATAACT 1138
consensus_5072#1 CACGCTGAGTCAGCTGTCATGTTGGAT---------------AAAATCGAAGTCAAAAAC 492
********* * * ** ** ** *** * * **
consensus_5072#0 CGATGATAAGTTGAGGCACCTTCGGTGTACTTTTTCCCACCCCCCACAGGCCACGGTACC 1198
consensus_5072#1 CAACAAGAAATTTAGTTTGCACTGGT-------TTTATAAGTTGAGGGATGCGTTGTATC 545
* * * ** ** ** * *** ** * * *** *
consensus_5072#0 CCACCTCGCGACGCCGGCCCAGATTAGCTACCGCACCGGGCGAAGTGGAAGCCGAAGCCC 1258
consensus_5072#1 CGGTTTTGCGGTTCAAGGACGATTTTGTAACTCGATGGTNNAAAAAAAAAAAAAAAAANA 605
* * *** * * * ** * ** * * ** ** **
consensus_5072#0 ACATGCACCTTTTTGCCGGGCTGGCTTGGTGCGCGCGTTGACGCGTCCATCGCGTGGGGA 1318
consensus_5072#1 ANNNNNNANN-------------------------------------------------- 615
*
consensus_5072#0 AAATACACTTGTGGGCTTTCCGGTTCTGGACTGGAATAAACCTCTCACCGAAAACTTCAT 1378
consensus_5072#1 ------------------------------------------------------------
consensus_5072#0 GGGCCTTACCACAGAAACATATGCAGGGTCCGAGAGGTGCACAGGTACCCGCTCCAAAAC 1438
consensus_5072#1 ------------------------------------------------------------
consensus_5072#0 ATAAAACATATAACCTATTATTATCAGGTTGGATATTAACTAATAAGTAGTCTCCATATT 1498
consensus_5072#1 ------------------------------------------------------------
consensus_5072#0 CGTAGTAT 1506
consensus_5072#1 --------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||