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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5073#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 956 fasta sequence
[CTCTGACCGCGAGCAGCCATGGAGTTATCCATTGCGCCTGCGGCGATGGCGATGGCGATGGGCCTCCTCGCGAAGAACCCCAAGATGATCAATCACAGATATGCCAGTGACATGCAACTGCAGCATCGCCTATCTCCAGCTTGTTCGGTGATGTTCAACAAGCAGTGTTCATACCGAATCACCCGTAAAGCTTGCAGTGTTCTTGGGGCAGTATCTCCGATACAATGTACAGAAACCAGCACAGAGTCTTTAGTATCTTTCAAAGATTTTCTTGTGTCTGTGCAAACTGAAGAGGATGGACTGATAAAGCTACGAGTAACTGTAGCTGATACAATGACAGAATCTATCTTTGAGAAAGTTTTCTCAAAGAATGTTGCTGCTGCACAACCACTTCCTGGCTTTCGACGAATGAAAGGAGGGAAAACTCGAGATATACCAAAAGAGATTGCTCTGCACTTAATTGGGCCATCAAAGGTGAAGAAAGAAACCATCAAGAATATCATCAGCCTCACAATTGCCGAATATGTCCAAAAGGAGGACCTCGATGCATCAAGAAATCTGAAGGTTCTACAGACCTATGAGGAGCTTGAAGCAGCATTCGAACCTGGAAAAGAGTTTTGCTTTGATGCAACTTTTCATTTACAGTAGGTTAATGCAGTTAAGGACTCGGGATTTAGATAGCCATTAGAGATGACCCCTGCAACCAAAGGGGCTTCCAGTTCCAGCTGATGATTAATAGCACAACCTACAGATAAACTTATTATCTAGACAATGATGCATACGAACACTTGTTAGTCAGTACAAAGTGAAATTATGTTGCCTGGCTATCTGTATTCTTGTAAAAACAACATGTTTTTAGATTAGCAAATTTTCTTGCAGTCCTCGTTAAGATGGCCGTGTGCACCTTTGCATGTAGAGGCCGGGGGATTATAAGTTTTCCATTATTATAAAGAGGA]
[+] EMBL AK103734 [CTCTGACCGCGAGCAGCCATGGAGTTATCCATTGCGCCTGCGGCGATGGCGATGGCGATGGGCCTCCTCGCGAAGAACCCCAAGATGATCAATCACAGATATGCCAGTGACATGCAACTGCAGCATCGCCTATCTCCAGCTTGTTCGGTGATGTTCAACAAGCAGTGTTCATACCGAATCACCCGTAAAGCTTGCAGTGTTCTTGGGGCAGTATCTCCGATACAATGTACAGAAACCAGCACAGAGTCTTTAGTATCTTTCAAAGATTTTCTTGTGTCTGTGCAAACTGAAGAGGATGGACTGATAAAGCTACGAGTAACTGTAGCTGATACAATGACAGAATCTATCTTTGAGAAAGTTTTCTCAAAGAATGTTGCTGCTGCACAACCACTTCCTGGCTTTCGACGAATGAAAGGAGGGAAAACTCGAGATATACCAAAAGAGATTGCTCTGCACTTAATTGGGCCATCAAAGGTGAAGAAAGAAACCATCAAGAATATCATCAGCCTCACAATTGCCGAATATGTCCAAAAGGAGGACCTCGATGCATCAAGAAATCTGAAGGTTCTACAGACCTATGAGGAGCTTGAAGCAGCATTCGAACCTGGAAAAGAGTTTTGCTTTGATGCAACTTTTCATTTACAGTAGGTTAATGCAGTTAAGGACTCGGGATTTAGATAGCCATTAGAGATGACCCCTGCAACCAAAGGGGCTTCCAGTTCCAGCTGATGATTAATAGCACAACCTACAGATAAACTTATTATCTAGACAATGATGCATACGAACACTTGTTAGTCAGTACAAAGTGAAATTATGTTGCCTGGCTATCTGTATTCTTGTAAAAACAACATGTTTTTAGATTAGCAAATTTTCTTGCAGTCCTCGTTAAGATGGCCGTGTGCACCTTTGCATGTAGAGGCCGGGGGATTATAAGTTTTCCATTATTATAAAGAGGA]
consensusID : consensus_5073#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 785 fasta sequence
[ATTGCGCCTGCGGCGATGGCGATGGCGATGGGCCTCCTCGCGAAGAACCCCAAGGTGACCTGCTCCCTTTCTCTCTTCTCTTCTGGGTGCCGGTGCGCACCGAAGAAACGGCGGATTCTGTGGCATCCTCTGGGTTGTTTCATGAGAAGAAATGAGGAAAACTTGTGCGGTTTCAGTATATGGTTTTGTCTTGGAAGTTCTGCGATGATTTGGCTGTTGTTGTTGGATGTTTCTTGCCATTCTCTGCAGAAAATATCAGGGCATTTCTTTTGCTCGCACCCGTGGATAAAATTGGGTTCAGTGTTTGTTATTATCCTGAATAAAATAACATCGATTTTCCTTTTCAAGATACATTTCTGCTAGTACCTTATTGCATTTTGTCCTCTATAATTTTGTAGATTGAATGCCTCAGTTAGTCAGTTTAACTGTTCAGTCTGTACCCTTTCTGCACCAAAGTGCATCCAAAACCCTCTATTGTTTGCAGGAAGCTAGTAGAGTTGTTGTACCATGTTTACTATATATCCTGTTCTCATGCGTCCTTTTCTTTTGGCAAATTATTCTAAGATTACTGTAAGTATTGTTGAAAGGTATTTGTGGGGTAATATGCTTTTATTTCTGTGGCATTACACGGCATATATACAGAGTATGAGTTAAGAAAACATTATCGGGATGGTGTTCAGTAGCTGAGCAACTTGTTTGTTCCTTTTGTTCGCAGATGATCAATCACAGATATGCCAGTGACATGCAACTGCAGCATCGCCTATCTCCAGCTTGTTCGGTGATGT]
[+] EMBL CB649171 [ATTGCGCCTGCGGCGATGGCGATGGCGATGGGCCTCCTCGCGAAGAACCCCAAGGTGACCTGCTCCCTTTCTCTCTTCTCTTCTGGGTGCCGGTGCGCACCGAAGAAACGGCGGATTCTGTGGCATCCTCTGGGTTGTTTCATGAGAAGAAATGAGGAAAACTTGTGCGGTTTCAGTATATGGTTTTGTCTTGGAAGTTCTGCGATGATTTGGCTGTTGTTGTTGGATGTTTCTTGCCATTCTCTGCAGAAAATATCAGGGCATTTCTTTTGCTCGCACCCGTGGATAAAATTGGGTTCAGTGTTTGTTATTATCCTGAATAAAATAACATCGATTTTCCTTTTCAAGATACATTTCTGCTAGTACCTTATTGCATTTTGTCCTCTATAATTTTGTAGATTGAATGCCTCAGTTAGTCAGTTTAACTGTTCAGTCTGTACCCTTTCTGCACCAAAGTGCATCCAAAACCCTCTATTGTTTGCAGGAAGCTAGTAGAGTTGTTGTACCATGTTTACTATATATCCTGTTCTCATGCGTCCTTTTCTTTTGGCAAATTATTCTAAGATTACTGTAAGTATTGTTGAAAGGTATTTGTGGGGTAATATGCTTTTATTTCTGTGGCATTACACGGCATATATACAGAGTATGAGTTAAGAAAACATTATCGGGATGGTGTTCAGTAGCTGAGCAACTTGTTTGTTCCTTTTGTTCGCAGATGATCAATCACAGATATGCCAGTGACATGCAACTGCAGCATCGCCTATCTCCAGCTTGTTCGGTGATGT]
consensusID : consensus_5073#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 717 fasta sequence
[TCGAGATGTAAGTTCTTATTTTGACTTGTAAAAAGTATGTGACTATTCGAAGAACTGCATCCACTTCATGTATGCAAATGCATTCGAACTTTACGGGAAAAATGCATATATTGTTTTTACTTACATTACATTCATTGGTGGTGCTGATTGCTGAAGATACCAAAAGAGATTGCTTTGCACTTAATTGGGCCATCAAAGGTGAAGAAAGAAACCATCAAGAATATCATCAGCCTCACAATTGCCGAATATGTCCAAAAGGAGGCCCTCGATGCATCAAAAAATCTGAAGGTTTTACAGCCCTATGAGGAGCTTGAAGCAGCATTGGAACCTGGAAAAGAGTTTTGCTTTGATGCAACTTTTCATTTACAGTAGGTTAATGCAGTTAAGGATTGGGGATTTAGATAGCCATTAGAGATGCCCCCTGCAACCAAAGGGGTTTCCAGTTCCAGCTGATGATTAATAGCCCACCCTACAGATAAACTTATTATTTAGACAATGATGCATACGAACCCTTGTTAGTCAGTACAAAGTGAAATTATGTTGCCGGGCTATCTGTATTTTTGTAAAAACAACATGTTTTTGGATTAGCAAATTTTCTTGCAGTCCTCGTTAAGATGGCCGTGTGCCCCTTTGCATGTAGAGGCCGGGGGATTATAAGTTTTCCATTATTATAAGGAGGAACTTTTTTCCAAAAAAAAAAAAAAAAAAATAAAAAGA]
[-] EMBL CB649172 [TCGAGATGTAAGTTCTTATTTTGACTTGTAAAAAGTATGTGACTATTCGAAGAACTGCATCCACTTCATGTATGCAAATGCATTCGAACTTTACGGGAAAAATGCATATATTGTTTTTACTTACATTACATTCATTGGTGGTGCTGATTGCTGAAGATACCAAAAGAGATTGCTTTGCACTTAATTGGGCCATCAAAGGTGAAGAAAGAAACCATCAAGAATATCATCAGCCTCACAATTGCCGAATATGTCCAAAAGGAGGCCCTCGATGCATCAAAAAATCTGAAGGTTTTACAGCCCTATGAGGAGCTTGAAGCAGCATTGGAACCTGGAAAAGAGTTTTGCTTTGATGCAACTTTTCATTTACAGTAGGTTAATGCAGTTAAGGATTGGGGATTTAGATAGCCATTAGAGATGCCCCCTGCAACCAAAGGGGTTTCCAGTTCCAGCTGATGATTAATAGCCCACCCTACAGATAAACTTATTATTTAGACAATGATGCATACGAACCCTTGTTAGTCAGTACAAAGTGAAATTATGTTGCCGGGCTATCTGTATTTTTGTAAAAACAACATGTTTTTGGATTAGCAAATTTTCTTGCAGTCCTCGTTAAGATGGCCGTGTGCCCCTTTGCATGTAGAGGCCGGGGGATTATAAGTTTTCCATTATTATAAGGAGGAACTTTTTTCCAAAAAAAAAAAAAAAAAAATAAAAAGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5073#0 CTCTGACCGCGAGCAGCCATGGAGTTATCCATTGCGCCTGCGGCGATGGCGATGGCGATG 60
consensus_5073#2 ------------------------------------------------------------
consensus_5073#1 ------------------------------ATTGCGCCTGCGGCGATGGCGATGGCGATG 30
consensus_5073#0 GGCCTCCTCGCGAAGAACCCCAAGATGATCAATCACAGATATGCCAGTGACATGCAACTG 120
consensus_5073#2 ------------------------------------------------------------
consensus_5073#1 GGCCTCCTCGCGAAGAACCCCAAGGTGACCT----------------------------- 61
consensus_5073#0 CAGCATCGCCTATCTCCAGCTTGTTCGGTGATGTTCAACAAGCAGTGTTCATACCGAATC 180
consensus_5073#2 ------------------------------------------------------------
consensus_5073#1 --GCTCCCTTTCTCTCTTCTCTTCTGGGTGCCG-------------GTGCGCACCGAAGA 106
consensus_5073#0 ACCCGTAAAGCTTGCAGTGTTCTTGGGGCAGTATCTCCGATACAATGTACAGAAACCAGC 240
consensus_5073#2 ------------------------------------------------------------
consensus_5073#1 AACGGCGGATTCTGTGGCATCCTCTGGGTTGTTTCATGAGAAGAAATGAGGAAAACTTGT 166
consensus_5073#0 ACAGAGTCTTTAGTATCTTTCAAAGATTTTCTTGTGTCTGTGCAAACTGAAGAGGATGGA 300
consensus_5073#2 -------------------TCGAGATGTAAGTTCTTATTTTGACTTGTAAAAAGTATG-- 39
consensus_5073#1 GCGGTTTCAGTATATGGTTTTGTCTTGGAAGTTCTGCGATGATTTGGCTGTTGTTGTTGG 226
* ** * *
consensus_5073#0 CTGATAAAGCTACGAGTAACTGTAGCTGATACAATGACAGAATCTATCTTTGAGAAAGTT 360
consensus_5073#2 -TGACTA---TTCGAAGAACTGCATCCACTTCATGTATGCAAA-TGCATTCGA---ACTT 91
consensus_5073#1 ATGTTTC--TTGCCATTCTCTGCAGAAAATATCAGGGCATTTCTTTTGCTCGC---ACCC 281
** * * * *** * * * * * *
consensus_5073#0 TTCTCAAAGAATGTTGCTGCTGCACAACCACTTCCTGGCTTTCGACGAATGAAAGGAGGG 420
consensus_5073#2 TACGGGAAAAATGCA-----TATATTGTTTTTACTTACATTACATTCATTGGTGGTGCTG 146
consensus_5073#1 GTGGATAAAATTGGGTTCAGTGT-TTGTTATTATCCTGAATAAAATAACATCGATTTTCC 340
** * ** * * * *
consensus_5073#0 AAAACTCGAGATATACCAAAAGAGATTGCTCTGCACTTAATTGGGCCATCAAAGGTGAAG 480
consensus_5073#2 ATTGCTGAAGATA--CCAAAAGAGATTGCTTTGCACTTAATTGGGCCATCAAAGGTGAAG 204
consensus_5073#1 TTTTCAAGATACATTTCTGCTAGTACCTTATTGCATTTTGTCC--TCTATAATTTTGTAG 398
* * * * * * **** ** * * ** ** **
consensus_5073#0 AAAGAAACCATCAAGAATATCATCAGCCTCACAATTGCCGAATATGTCCAAAAGGAGGAC 540
consensus_5073#2 AAAGAAACCATCAAGAATATCATCAGCCTCACAATTGCCGAATATGTCCAAAAGGAGGCC 264
consensus_5073#1 ATTGAATGCCTCAGTTA----GTCAGTTT---AACTGTTCAGTCTGTACCCTTTCTGCAC 451
* *** * *** * **** * ** ** * * *** * * *
consensus_5073#0 CTCGATGCATCAAGAAATCTGAAGGTTCTACAGACCTATGAGGAGCTTGAAGCAGCATTC 600
consensus_5073#2 CTCGATGCATCAAAAAATCTGAAGGTTTTACAGCCCTATGAGGAGCTTGAAGCAGCATTG 324
consensus_5073#1 CAAAGTGCATCCAAAACCCTCTATTGTTTGCAGGAAGCTAGTAGAGTTGTTGTACCATGT 511
* ****** * ** ** * * * *** * *** * * ***
consensus_5073#0 GAACCTGGAAAAGAGTTTTGCTTTGATGCAACTTTTCATTTACAGTAGGTTAATGCAGTT 660
consensus_5073#2 GAACCTGGAAAAGAGTTTTGCTTTGATGCAACTTTTCATTTACAGTAGGTTAATGCAGTT 384
consensus_5073#1 TTACT-----ATATATCCTGTTCTCATGCGTCCTTTTCTTT-TGGCAAATTATT----CT 561
** * * ** * * **** * *** *** * * *** * *
consensus_5073#0 AAGGACTCGGGATTTAGATAGCCATTAGAGATGACCCCTGCAACCAAAGGGGCTTCCAGT 720
consensus_5073#2 AAGGATTGGGGATTTAGATAGCCATTAGAGATGCCCCCTGCAACCAAAGGGGTTTCCAGT 444
consensus_5073#1 AAGATTACTG----TAAGTATTGTTGAAAGGTA---TTTGTGGGGTAATATGCTTTTATT 614
*** * ** ** * * ** * ** ** * ** * *
consensus_5073#0 TCCAGCTGATGATTAATAGCACAACCTACAGATAAACTTATTATCTAGACAATGATGCAT 780
consensus_5073#2 TCCAGCTGATGATTAATAGCCCACCCTACAGATAAACTTATTATTTAGACAATGATGCAT 504
consensus_5073#1 TCT-----GTGGC--ATTACACGGCATATATACAGAGT-ATGAGTTAAGAAAACAT-TAT 665
** ** ** * * * ** * * * * * ** * ** ** ** **
consensus_5073#0 ACGAACACTTGTTAGTCAGTACAAAGTGAAATTATGTTGCCTGGCTATCTGTATTCTTGT 840
consensus_5073#2 ACGAACCCTTGTTAGTCAGTACAAAGTGAAATTATGTTGCCGGGCTATCTGTATTTTTGT 564
consensus_5073#1 CGGGATGGTGTTCAGTAGCTGAGCAACTTGTTTGTTCCTTTTGTTCGCAGATGATCAATC 725
* * * * *** * * ** * * * *
consensus_5073#0 AAAAACAACATGTTTTTAGATTAGCAAATTTTCTTGCAGTCCTCGTTAAGATGGCCGTGT 900
consensus_5073#2 AAAAACAACATGTTTTTGGATTAGCAAATTTTCTTGCAGTCCTCGTTAAGATGGCCGTGT 624
consensus_5073#1 ACAGATATGCCAGTGACATGCAACTGCAGCATCGCCTATCTCCAGCTTGTTCGGTGATGT 785
* * * * * * * ** * * * * ** ***
consensus_5073#0 GCACCTTTGCATGTAGAGGCCGGGGGATTATAAGTTTTCCATTATTATAAAGAGGA---- 956
consensus_5073#2 GCCCCTTTGCATGTAGAGGCCGGGGGATTATAAGTTTTCCATTATTATAAGGAGGAACTT 684
consensus_5073#1 ------------------------------------------------------------
consensus_5073#0 ---------------------------------
consensus_5073#2 TTTTCCAAAAAAAAAAAAAAAAAAATAAAAAGA 717
consensus_5073#1 ---------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||