These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5075#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 2220 fasta sequence [CTTCTATCGGCCCTGCCCCCCTTCGCCTTCCTCGCCTCGCCTCGCCTCCCCACTTCGCTTCACTGCTTCCCTACTACACACTCGCCGCCATTCCCCCCGCCCCAAATATTCTCTCGCATTCGCGTTCCCACCGCCTCGCCCTAGATCTCACCACCTCGCGTCGCGCCTCCAATGGGGTGCTTCCTGTCCAAGCCGGCGGGGGCGGGTCCCCTCCCGCCCAACGACGCCGCCGCGCTCCCCGCCGACAACCCCGCAGATCCCGAGGCGGCGGCCGCGAATGGCGGCGCTGACTCCGCGGCGGCCGACGGCGGCGGCGACGACAAGGACGCCGCCAAGCGCGCGGTCCCGGTGTTCAGGGAGTTCGGCCTCGCCGAGCTGCGCGCCGCCACCAAGGGCTTCAGCGCCGACCTCATCGTCTCCGAGAGCGGCGAGAAGGCCCCCAACGTCGTCTACCGCGGCCGCCTCGACGGCGGCCGCCTCATCGCCGTCAAGCGCTTCTCCCGCCTCTCCTGGCCCGACCCGCAGCAGTTCCTCGCGGAGGCGGCCGGGGTGGGGAAGGTGCGCCACAAGCGCCTCGTCAACCTCATCGGATGCTGCGCCGAGGGCGACGAGAGGCTGCTCGTCGCCGAGTACATGCCCAACGACACCCTTTCCAAGCATCTCTTCCACTGGGATAAGCAGCCCTTGCCACGGGAAATGCGGTTAAGGGTTGCGTATTACATTGCGCAGGCACTCGATCACTGCAATGCCGAGAACCGAAAAATCTATCATGACTTGAATGCTTATAGAGTACTTTTTGATGAGGAAGGTGATCCTCGGCTGTCAAGTTTTGGACTAATGAAGAACAGCCGCGATGGGAAGAGTTATAGCACTAATCTGGCTTACACCCCGCCTGAGTTTCTACGAACTGGCAGAGTCATCGCCGAGAGTGTGATATATAGCTATGGAACAGTTCTTTTGGATCTTTTGAGTGGGAAGCACATACCTCCTAGCCATGCACTTGATTTGATAAGAGGGAAGAATATACTGTTGCTCATGGATTCCTCCTTAGAAGGGCAGTATGCTAATGATGATGCTTCAAAACTAGTTGACCTTGCGTCGAAATGCTTGCAATTTGAAGCGAGGGACAGACCCAATATAAAGTATCTCTTGTCTTCTGTTGGGCCTCTTCAGAAGCAAAAGGAGGTAGCATCACATGTGTTGATGGGTATTACAAAAGCCACGGCGGTGTTGCCAACTATTCTTTCTCCCCTTGGGAAGGCCTGTTCCGGTATGGACCTTACAGCAGTACATGATATATTGCTCAAAACAGGTTACAAAGATGAAGAAGGTGCAGAAAATGAGCTGTCCTTTCAAGAATGGACTCAGCAAGTGCAAGAGATGCTGAATACCAAGAAGTTTGGTGACATTGCATTTAGAGACAAGGATTTCAAGACTGCAATTGACTACTACTCCAAGCTTGTTGGAATGATGTCAGTGCCTTCAGCCACAGTTTTTGCCCGGAGAAGTTTCTCCTATTTGATGAATGGGCAGTCAGAGCTTGCTCTCCGGGACGCAATGCAGGCCCAGGTCTGCATGCCCGAGTGGCCAACTGCCTTCTACCTACAAGCCCTTGCTCTCTCAAAGCTCGGCATGGAAACTGACGCACAAGATATGCTAAACGATGGAGCCACTTTTGAGGCCAAGAAGCAAAATAGCTGGCGAGGTTAGGGGAACAAGTCATGGTTTCACCCCCAAATCTGTTGTTGCCTTTTTAACAGAAAAAGGTAAGATGATGATGAGTGTTCATTGGGACGACTGTTGCACTACTAGGAGTGGGATTGAAAATGCACTGTTTTATTGTGCAATCTCCGCCCAAATGTCGATAAATGAGTGGCGTTGTTGTGACCTGGAAGGCAAAAGGCAGAGAGGCATTGCTTATACTACGCTTTTGAGTCTGAGTTGCACTTTGTTTCTCGGGTGATGTGAGCAAACACCTGCTGATCATTGCGTTGCAGTGCTCCTCTAGAGACGAGAGAATTGATGAGATGAGAAGATTGTAATTAAGGGGATGCTTTTCTGACAATTTCACCTTTTTTTTTCGTTTTCCATTGGAATCTTTGGGCCCCAGGTGAGGTGATAGTGTGAAGAAAGGCGGGTTCCTTGTGATTAGCCTAGGATGGAGAATAAACTAGAGCCATCTAAATTCCATTCATTTCTACCATGTTCTTGATGTGTTAC] [+] EMBL AK107462 [CTTCTATCGGCCCTGCCCCCCTTCGCCTTCCTCGCCTCGCCTCGCCTCCCCACTTCGCTTCACTGCTTCCCTACTACACACTCGCCGCCATTCCCCCCGCCCCAAATATTCTCTCGCATTCGCGTTCCCACCGCCTCGCCCTAGATCTCACCACCTCGCGTCGCGCCTCCAATGGGGTGCTTCCTGTCCAAGCCGGCGGGGGCGGGTCCCCTCCCGCCCAACGACGCCGCCGCGCTCCCCGCCGACAACCCCGCAGATCCCGAGGCGGCGGCCGCGAATGGCGGCGCTGACTCCGCGGCGGCCGACGGCGGCGGCGACGACAAGGACGCCGCCAAGCGCGCGGTCCCGGTGTTCAGGGAGTTCGGCCTCGCCGAGCTGCGCGCCGCCACCAAGGGCTTCAGCGCCGACCTCATCGTCTCCGAGAGCGGCGAGAAGGCCCCCAACGTCGTCTACCGCGGCCGCCTCGACGGCGGCCGCCTCATCGCCGTCAAGCGCTTCTCCCGCCTCTCCTGGCCCGACCCGCAGCAGTTCCTCGCGGAGGCGGCCGGGGTGGGGAAGGTGCGCCACAAGCGCCTCGTCAACCTCATCGGATGCTGCGCCGAGGGCGACGAGAGGCTGCTCGTCGCCGAGTACATGCCCAACGACACCCTTTCCAAGCATCTCTTCCACTGGGATAAGCAGCCCTTGCCACGGGAAATGCGGTTAAGGGTTGCGTATTACATTGCGCAGGCACTCGATCACTGCAATGCCGAGAACCGAAAAATCTATCATGACTTGAATGCTTATAGAGTACTTTTTGATGAGGAAGGTGATCCTCGGCTGTCAAGTTTTGGACTAATGAAGAACAGCCGCGATGGGAAGAGTTATAGCACTAATCTGGCTTACACCCCGCCTGAGTTTCTACGAACTGGCAGAGTCATCGCCGAGAGTGTGATATATAGCTATGGAACAGTTCTTTTGGATCTTTTGAGTGGGAAGCACATACCTCCTAGCCATGCACTTGATTTGATAAGAGGGAAGAATATACTGTTGCTCATGGATTCCTCCTTAGAAGGGCAGTATGCTAATGATGATGCTTCAAAACTAGTTGACCTTGCGTCGAAATGCTTGCAATTTGAAGCGAGGGACAGACCCAATATAAAGTATCTCTTGTCTTCTGTTGGGCCTCTTCAGAAGCAAAAGGAGGTAGCATCACATGTGTTGATGGGTATTACAAAAGCCACGGCGGTGTTGCCAACTATTCTTTCTCCCCTTGGGAAGGCCTGTTCCGGTATGGACCTTACAGCAGTACATGATATATTGCTCAAAACAGGTTACAAAGATGAAGAAGGTGCAGAAAATGAGCTGTCCTTTCAAGAATGGACTCAGCAAGTGCAAGAGATGCTGAATACCAAGAAGTTTGGTGACATTGCATTTAGAGACAAGGATTTCAAGACTGCAATTGACTACTACTCCAAGCTTGTTGGAATGATGTCAGTGCCTTCAGCCACAGTTTTTGCCCGGAGAAGTTTCTCCTATTTGATGAATGGGCAGTCAGAGCTTGCTCTCCGGGACGCAATGCAGGCCCAGGTCTGCATGCCCGAGTGGCCAACTGCCTTCTACCTACAAGCCCTTGCTCTCTCAAAGCTCGGCATGGAAACTGACGCACAAGATATGCTAAACGATGGAGCCACTTTTGAGGCCAAGAAGCAAAATAGCTGGCGAGGTTAGGGGAACAAGTCATGGTTTCACCCCCAAATCTGTTGTTGCCTTTTTAACAGAAAAAGGTAAGATGATGATGAGTGTTCATTGGGACGACTGTTGCACTACTAGGAGTGGGATTGAAAATGCACTGTTTTATTGTGCAATCTCCGCCCAAATGTCGATAAATGAGTGGCGTTGTTGTGACCTGGAAGGCAAAAGGCAGAGAGGCATTGCTTATACTACGCTTTTGAGTCTGAGTTGCACTTTGTTTCTCGGGTGATGTGAGCAAACACCTGCTGATCATTGCGTTGCAGTGCTCCTCTAGAGACGAGAGAATTGATGAGATGAGAAGATTGTAATTAAGGGGATGCTTTTCTGACAATTTCACCTTTTTTTTTCGTTTTCCATTGGAATCTTTGGGCCCCAGGTGAGGTGATAGTGTGAAGAAAGGCGGGTTCCTTGTGATTAGCCTAGGATGGAGAATAAACTAGAGCCATCTAAATTCCATTCATTTCTACCATGTTCTTGATGTGTTAC] [+] EMBL AA750703 [ GCCTTTTTAACAGAAAAAGGTAAGATGATGATGAGTGTTCATTGGGACGACTGTTGCACTACTAGGAGTGGGATTGAAAATGCACTGTTTTATTGTGCAATCTCCGCCCAAATGTCGATAAATGAGTGGCGTTGTTGTGACCTGGAAGGCAAAAGGCAGAGAGGCATTGCTTATACTACGCTTTTGAGTCTGAGTTGCACTTTGTTTCTCGGGTGATGGCAGCA ] consensusID : consensus_5075#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 301 fasta sequence [ATCGGCCCTGCCCCCCTTCGCCTTCCTCGCCTCGCCTCGCCTCCCCACTTCGCTTCACTGCTTCCCTACTACACACTCGCCGCCATTCCCCCCGCCCCAAATATTCTCTCGCATTCGCGTTCCCACCGCCTCGCCCTAGATCTCACCACCTCGCGTCGGCCTCCAATGGGGTGCTTCCTGTCCAAGCCGGCGGGGGCGGGTCCCCTCCCGNNCAACGACGCCGCCGCGCTCCCCCGCCGACAAACCCGCAGATCCCGANGCGGCGGCGGCAACGGGGTGGAAGTTCAAGCTTTTGGTTCCC] [+] EMBL AU197347 [ATCGGCCCTGCCCCCCTTCGCCTTCCTCGCCTCGCCTCGCCTCCCCACTTCGCTTCACTGCTTCCCTACTACACACTCGCCGCCATTCCCCCCGCCCCAAATATTCTCTCGCATTCGCGTTCCCACCGCCTCGCCCTAGATCTCACCACCTCGCGTCGGCCTCCAATGGGGTGCTTCCTGTCCAAGCCGGCGGGGGCGGGTCCCCTCCCGNNCAACGACGCCGCCGCGCTCCCCCGCCGACAAACCCGCAGATCCCGANGCGGCGGCGGCAACGGGGTGGAAGTTCAAGCTTTTGGTTCCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5075#0 CTTCTATCGGCCCTGCCCCCCTTCGCCTTCCTCGCCTCGCCTCGCCTCCCCACTTCGCTT 60 consensus_5075#1 -----ATCGGCCCTGCCCCCCTTCGCCTTCCTCGCCTCGCCTCGCCTCCCCACTTCGCTT 55 ******************************************************* consensus_5075#0 CACTGCTTCCCTACTACACACTCGCCGCCATTCCCCCCGCCCCAAATATTCTCTCGCATT 120 consensus_5075#1 CACTGCTTCCCTACTACACACTCGCCGCCATTCCCCCCGCCCCAAATATTCTCTCGCATT 115 ************************************************************ consensus_5075#0 CGCGTTCCCACCGCCTCGCCCTAGATCTCACCACCTCGCGTCGCGCCTCCAATGGGGTGC 180 consensus_5075#1 CGCGTTCCCACCGCCTCGCCCTAGATCTCACCACCTCGCGTCG-GCCTCCAATGGGGTGC 174 ******************************************* **************** consensus_5075#0 TTCCTGTCCAAGCCGGCGGGGGCGGGTCCCCTCCCGCCCAACGACGCCGCCGCGCTCCCC 240 consensus_5075#1 TTCCTGTCCAAGCCGGCGGGGGCGGGTCCCCTCCCGNNCAACGACGCCGCCGCGCTCCCC 234 ************************************ ********************** consensus_5075#0 -GCCGACAACCCCGCAGATCCCGAGGCGGCGGCCGCGAATGGCGGCGCTGACTCCGCGGC 299 consensus_5075#1 CGCCGACAAACCCGCAGATCCCGANGCGGCGGCGGCAA----CGGGGTGGAAGTTCAAGC 290 ******** ************** ******** ** * *** * ** ** consensus_5075#0 GGCCGACGGCGGCGGCGACGACAAGGACGCCGCCAAGCGCGCGGTCCCGGTGTTCAGGGA 359 consensus_5075#1 TTTTGGTTCCC------------------------------------------------- 301 * * consensus_5075#0 GTTCGGCCTCGCCGAGCTGCGCGCCGCCACCAAGGGCTTCAGCGCCGACCTCATCGTCTC 419 consensus_5075#1 ------------------------------------------------------------ consensus_5075#0 CGAGAGCGGCGAGAAGGCCCCCAACGTCGTCTACCGCGGCCGCCTCGACGGCGGCCGCCT 479 consensus_5075#1 ------------------------------------------------------------ consensus_5075#0 CATCGCCGTCAAGCGCTTCTCCCGCCTCTCCTGGCCCGACCCGCAGCAGTTCCTCGCGGA 539 consensus_5075#1 ------------------------------------------------------------ consensus_5075#0 GGCGGCCGGGGTGGGGAAGGTGCGCCACAAGCGCCTCGTCAACCTCATCGGATGCTGCGC 599 consensus_5075#1 ------------------------------------------------------------ consensus_5075#0 CGAGGGCGACGAGAGGCTGCTCGTCGCCGAGTACATGCCCAACGACACCCTTTCCAAGCA 659 consensus_5075#1 ------------------------------------------------------------ consensus_5075#0 TCTCTTCCACTGGGATAAGCAGCCCTTGCCACGGGAAATGCGGTTAAGGGTTGCGTATTA 719 consensus_5075#1 ------------------------------------------------------------ consensus_5075#0 CATTGCGCAGGCACTCGATCACTGCAATGCCGAGAACCGAAAAATCTATCATGACTTGAA 779 consensus_5075#1 ------------------------------------------------------------ consensus_5075#0 TGCTTATAGAGTACTTTTTGATGAGGAAGGTGATCCTCGGCTGTCAAGTTTTGGACTAAT 839 consensus_5075#1 ------------------------------------------------------------ consensus_5075#0 GAAGAACAGCCGCGATGGGAAGAGTTATAGCACTAATCTGGCTTACACCCCGCCTGAGTT 899 consensus_5075#1 ------------------------------------------------------------ consensus_5075#0 TCTACGAACTGGCAGAGTCATCGCCGAGAGTGTGATATATAGCTATGGAACAGTTCTTTT 959 consensus_5075#1 ------------------------------------------------------------ consensus_5075#0 GGATCTTTTGAGTGGGAAGCACATACCTCCTAGCCATGCACTTGATTTGATAAGAGGGAA 1019 consensus_5075#1 ------------------------------------------------------------ consensus_5075#0 GAATATACTGTTGCTCATGGATTCCTCCTTAGAAGGGCAGTATGCTAATGATGATGCTTC 1079 consensus_5075#1 ------------------------------------------------------------ consensus_5075#0 AAAACTAGTTGACCTTGCGTCGAAATGCTTGCAATTTGAAGCGAGGGACAGACCCAATAT 1139 consensus_5075#1 ------------------------------------------------------------ consensus_5075#0 AAAGTATCTCTTGTCTTCTGTTGGGCCTCTTCAGAAGCAAAAGGAGGTAGCATCACATGT 1199 consensus_5075#1 ------------------------------------------------------------ consensus_5075#0 GTTGATGGGTATTACAAAAGCCACGGCGGTGTTGCCAACTATTCTTTCTCCCCTTGGGAA 1259 consensus_5075#1 ------------------------------------------------------------ consensus_5075#0 GGCCTGTTCCGGTATGGACCTTACAGCAGTACATGATATATTGCTCAAAACAGGTTACAA 1319 consensus_5075#1 ------------------------------------------------------------ consensus_5075#0 AGATGAAGAAGGTGCAGAAAATGAGCTGTCCTTTCAAGAATGGACTCAGCAAGTGCAAGA 1379 consensus_5075#1 ------------------------------------------------------------ consensus_5075#0 GATGCTGAATACCAAGAAGTTTGGTGACATTGCATTTAGAGACAAGGATTTCAAGACTGC 1439 consensus_5075#1 ------------------------------------------------------------ consensus_5075#0 AATTGACTACTACTCCAAGCTTGTTGGAATGATGTCAGTGCCTTCAGCCACAGTTTTTGC 1499 consensus_5075#1 ------------------------------------------------------------ consensus_5075#0 CCGGAGAAGTTTCTCCTATTTGATGAATGGGCAGTCAGAGCTTGCTCTCCGGGACGCAAT 1559 consensus_5075#1 ------------------------------------------------------------ consensus_5075#0 GCAGGCCCAGGTCTGCATGCCCGAGTGGCCAACTGCCTTCTACCTACAAGCCCTTGCTCT 1619 consensus_5075#1 ------------------------------------------------------------ consensus_5075#0 CTCAAAGCTCGGCATGGAAACTGACGCACAAGATATGCTAAACGATGGAGCCACTTTTGA 1679 consensus_5075#1 ------------------------------------------------------------ consensus_5075#0 GGCCAAGAAGCAAAATAGCTGGCGAGGTTAGGGGAACAAGTCATGGTTTCACCCCCAAAT 1739 consensus_5075#1 ------------------------------------------------------------ consensus_5075#0 CTGTTGTTGCCTTTTTAACAGAAAAAGGTAAGATGATGATGAGTGTTCATTGGGACGACT 1799 consensus_5075#1 ------------------------------------------------------------ consensus_5075#0 GTTGCACTACTAGGAGTGGGATTGAAAATGCACTGTTTTATTGTGCAATCTCCGCCCAAA 1859 consensus_5075#1 ------------------------------------------------------------ consensus_5075#0 TGTCGATAAATGAGTGGCGTTGTTGTGACCTGGAAGGCAAAAGGCAGAGAGGCATTGCTT 1919 consensus_5075#1 ------------------------------------------------------------ consensus_5075#0 ATACTACGCTTTTGAGTCTGAGTTGCACTTTGTTTCTCGGGTGATGTGAGCAAACACCTG 1979 consensus_5075#1 ------------------------------------------------------------ consensus_5075#0 CTGATCATTGCGTTGCAGTGCTCCTCTAGAGACGAGAGAATTGATGAGATGAGAAGATTG 2039 consensus_5075#1 ------------------------------------------------------------ consensus_5075#0 TAATTAAGGGGATGCTTTTCTGACAATTTCACCTTTTTTTTTCGTTTTCCATTGGAATCT 2099 consensus_5075#1 ------------------------------------------------------------ consensus_5075#0 TTGGGCCCCAGGTGAGGTGATAGTGTGAAGAAAGGCGGGTTCCTTGTGATTAGCCTAGGA 2159 consensus_5075#1 ------------------------------------------------------------ consensus_5075#0 TGGAGAATAAACTAGAGCCATCTAAATTCCATTCATTTCTACCATGTTCTTGATGTGTTA 2219 consensus_5075#1 ------------------------------------------------------------ consensus_5075#0 C 2220 consensus_5075#1 - |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||