cluster # 5080

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Oryza sativa
cluster # 5080 cluster # 5080 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5080#0 length = 237 sequences # 2

consensus_5080#1 length = 181 sequences # 1

consensusID : consensus_5080#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 237
fasta sequence

                              [CCGTCGAGGAAGAGGGCGCGCATCTCGCCGGCGCCGGTGCCGCGGCCGGCTGCGGCGAGGGGTACCTGTTCCGGCGGTGGCCGCAGCACTGCATGCCGCCGCCGCAGCAGCAGCTGCCGGCGATCGGGCAGGCGAGCCCGGTGATGTGGTGGTGAAATTGGGAAATCTTTTCACCCCGTGTACTCTGTTGCTGTACTGTAGAAATCAGTTTTCAACTGAAATAAAAAAAAAAAAAAA]

[+] EMBL AU069893             [CCGTCGAGGAAGAGGGCGCGCATCTCGCCGGCGCCGGTGCCGCGGCCGGCTGCGGCGAGGGGTACCTGTTCCGGCGGTGGCCGCAGCACTGCATGCCGCCGCCGCAGCAGCAGCTGCCGGCGATCGGGCAGGCGAGCCCGGTGATGTGGTGGTGAAATTGGGAAATCTTTTCACCCCGTGTACTCTGTTGCTGTACTGTAGAAATCAGTTTTCAACTGAAATAAAAAAAAAAAAAAA]
[+] EMBL AU069892             [            AGGGCGCGCATCTCGCCGGCGCCGGTGCCGCGGCCGGCTGCGGCGAGGGGTACCTGTTCCGGCGGTGGCCGCAGCACTGCATGCCGCCGCCGCAGCAGCAGCTGCCGGCGATCGGGCAGGCGAGCCCGGTGATGTGGTGGTGAAATTGGGAAATCTTTTCACCCCGTGTACTCTGTTGCTGTACTGTAGAAATCAGTTTTCAACTGAAATAAAAAAAAAAAAAAA]




>consensus_5080#0
CCGTCGAGGAAGAGGGCGCGCATCTCGCCGGCGCCGGTGCCGCGGCCGGCTGCGGCGAGG
GGTACCTGTTCCGGCGGTGGCCGCAGCACTGCATGCCGCCGCCGCAGCAGCAGCTGCCGG
CGATCGGGCAGGCGAGCCCGGTGATGTGGTGGTGAAATTGGGAAATCTTTTCACCCCGTG
TACTCTGTTGCTGTACTGTAGAAATCAGTTTTCAACTGAAATAAAAAAAAAAAAAAA

consensusID : consensus_5080#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 181
fasta sequence

                              [ACCTGTTCCGGCGGTGGCCGCAGCACTGCATGCCGCCGCCGAAGCAGCAGCTGCCGGCGATCGGGCAGGCGAGCCCGGTGATGTGGTGGTGAAATTGGGAAATCTTTTCACCCCGTGTACTCTGTTGCTGTACTGTAGAAATCAGTTTTCAACTGAAATAGAGATGAATTTGGATCAAAAA]

[+] EMBL BI797495             [ACCTGTTCCGGCGGTGGCCGCAGCACTGCATGCCGCCGCCGAAGCAGCAGCTGCCGGCGATCGGGCAGGCGAGCCCGGTGATGTGGTGGTGAAATTGGGAAATCTTTTCACCCCGTGTACTCTGTTGCTGTACTGTAGAAATCAGTTTTCAACTGAAATAGAGATGAATTTGGATCAAAAA]




>consensus_5080#1
ACCTGTTCCGGCGGTGGCCGCAGCACTGCATGCCGCCGCCGAAGCAGCAGCTGCCGGCGA
TCGGGCAGGCGAGCCCGGTGATGTGGTGGTGAAATTGGGAAATCTTTTCACCCCGTGTAC
TCTGTTGCTGTACTGTAGAAATCAGTTTTCAACTGAAATAGAGATGAATTTGGATCAAAA
A

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5080#0      CCGTCGAGGAAGAGGGCGCGCATCTCGCCGGCGCCGGTGCCGCGGCCGGCTGCGGCGAGG 60
consensus_5080#1      ------------------------------------------------------------
                                                                                  

consensus_5080#0      GGTACCTGTTCCGGCGGTGGCCGCAGCACTGCATGCCGCCGCCGCAGCAGCAGCTGCCGG 120
consensus_5080#1      ---ACCTGTTCCGGCGGTGGCCGCAGCACTGCATGCCGCCGCCGAAGCAGCAGCTGCCGG 57
                         ***************************************** ***************

consensus_5080#0      CGATCGGGCAGGCGAGCCCGGTGATGTGGTGGTGAAATTGGGAAATCTTTTCACCCCGTG 180
consensus_5080#1      CGATCGGGCAGGCGAGCCCGGTGATGTGGTGGTGAAATTGGGAAATCTTTTCACCCCGTG 117
                      ************************************************************

consensus_5080#0      TACTCTGTTGCTGTACTGTAGAAATCAGTTTTCAACTGAAATAAAAAAAAAAAAAAA--- 237
consensus_5080#1      TACTCTGTTGCTGTACTGTAGAAATCAGTTTTCAACTGAAATAGAGATGAATTTGGATCA 177
                      ******************************************* * *  **     *   

consensus_5080#0      ----
consensus_5080#1      AAAA 181