These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5088#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 608 fasta sequence [GAGATCGAGATGGCGTCGTCGGCGACGGAGACGGAGACGGTGAGGGCGTTGCACATCCTGATCAAGCACGAGGGCTCCCGCCGCAAGGCCTCCTGGAAGGATCCCGACGGCCGCGTCATCTCCGCTACCACGCGCGCCGACGCCGCCGCGCGCCTCGCCGACCTCCGCGACCAGATCCTCTCCGGCCGCGCCAA-CTTCGCCGACCTCGCCGCCCGCCACTCCGACTGCTCCTCCGCGCGCCGTGGCGGCGACCTGGGCACTTTTGGGAGGAGGCAGATGCAGAAACCCTTCGAAGATGCGACATTTGCTCTCAAGGTTGGTGAGATGAGTGACACTGTGGACACTGACAGTGGTGTTCACATCATCCTGCGCACTGCTTAAGATGCTGATATCGATCGTCAGCTGGTTGGCTTCCAAATGTTATTTTCTGGTAGCCTAAAACTTCANATCANAATGAACCCTGTAACGAATATGATATGTTCCGCGACCCGCTTTTGTTTCGACATTTGAGCACATGGTATGGCATGTTTCCGTGATGAACATTTTAATCTCCTANNAAAAAGTTTTCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CA755023 [GAGATCGAGATGGCGTCGTCGGCGACGGAGACGGAGACGGTGAGGGCGTTGCACATCCTGATCAAGCACGAGGGCTCCCGCCGCAAGGCCTCCTGGAAGGATCCCGACGGCCGCGTCATCTCCGCTACCACGCGCGCCGACGCCGCCGCGCGCCTCGCCGACCTCCGCGACCAGATCCTCTCCGGCCGCGCCAA CTTCGCCGACCTCGCCGCCCGCCACTCCGACTGCTCCTCCGCGCGCCGTGGCGGCGACCTGGGCACTTTTGGGAGGAGGCAGATGCAGAAACCCTTCGAAGATGCGACATTTGCTCTCAAGGTTGGTGAGATGAGTGACACTGTGGACACTGACAGTGGTGTTCACATCATCCTGCGCACTGCTTAAGATGCTGATATCGATCGTCAGCTGGTTGGCTTCCAAATGTTATTTTCTGGTAGCCTAAAACTTCANATCANAATGAACCCTGTAACGAATATGATATGTTCCGCGACCCGCTTTTGTTTCGACATTTGAGCACATGGTATGGCATGTTTCCGTGATGAACATTTTAATCTCCTANNAAAAA ] [+] EMBL AU029851 [ nTCCGGCCGCGCCAANTTTCGCCGACCTCGCCGCCCGCCACTCCGACTGCTCCTCCGCGC CCNTGGCGGCGACCTGGGCNCTTTTGGGAGGAGGCAGATNCAGAAACCCTTCGAAGATGCGACATTTGCTCTCAAGGTTGGTGAGATGAGTGACACTGTGGACACTGACAGTGGTGTTCACATCATCCTGCGCACTGCTTAAGATGCTGATATCGATCGTCAGNTGGTTGGCTTCCAAATGTTATTTTCTGGTAGCCTAAAACTTCAAATCAAAATGAACCCTGTAACGAATATGATATGTTCCGCGACCCGCTTTTGTTTCGACATTTGAGCACATGGTATGGCATGTTTCCGTGATGAACATTTTAATCTCCTNTTGCTCNGTTTTCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_5088#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 432 fasta sequence [GATGGCGTCGTCGGCGANGAAGACGGAGACGGTGAGGGCGTTGCACATCCTGATCAAGCACGAGGGCTCCCGCCGCAAGCTTCCTGGAAGATCCCGACGGCCGCGTCATCTCCGCTACCACGCGCGCCGACGCCGCCGCGCGCCTCGCCGACCTCCGCGACCAGATCCTCTCCGGCCGCGCCAACTTTCGCCGACNTCGCCGCCCGCCANNACGACTGNTCCTCCGCGCGCCGTGGCGGCGACCTTGGGCACTTTTGGGAGGAGGCAGATGCAGAAACCTTCGAAGATGCGACATTTGCTCTCAAGGTTGGTGANATGAGTGAACTGTGGAACTGACATGGTGTTCAATCATCTGCGATTNTTAAGATGCTGATATCGATCGTCACTGGTTGCTTCAATGTATTTCTGGAGCTAACTTCAATCAAATGACCT] [+] EMBL AU078227 [GATGGCGTCGTCGGCGANGAAGACGGAGACGGTGAGGGCGTTGCACATCCTGATCAAGCACGAGGGCTCCCGCCGCAAGCTTCCTGGAAGATCCCGACGGCCGCGTCATCTCCGCTACCACGCGCGCCGACGCCGCCGCGCGCCTCGCCGACCTCCGCGACCAGATCCTCTCCGGCCGCGCCAACTTTCGCCGACNTCGCCGCCCGCCANNACGACTGNTCCTCCGCGCGCCGTGGCGGCGACCTTGGGCACTTTTGGGAGGAGGCAGATGCAGAAACCTTCGAAGATGCGACATTTGCTCTCAAGGTTGGTGANATGAGTGAACTGTGGAACTGACATGGTGTTCAATCATCTGCGATTNTTAAGATGCTGATATCGATCGTCACTGGTTGCTTCAATGTATTTCTGGAGCTAACTTCAATCAAATGACCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5088#0 GAGATCGAGATGGCGTCGTCGGCGACGGAGACGGAGACGGTGAGGGCGTTGCACATCCTG 60 consensus_5088#1 --------GATGGCGTCGTCGGCGANGAAGACGGAGACGGTGAGGGCGTTGCACATCCTG 52 ***************** * ******************************** consensus_5088#0 ATCAAGCACGAGGGCTCCCGCCGCAAGGCCTCCTGGAAGGATCCCGACGGCCGCGTCATC 120 consensus_5088#1 ATCAAGCACGAGGGCTCCCGCCGCAAG-CTTCCTGGAAG-ATCCCGACGGCCGCGTCATC 110 *************************** * ********* ******************** consensus_5088#0 TCCGCTACCACGCGCGCCGACGCCGCCGCGCGCCTCGCCGACCTCCGCGACCAGATCCTC 180 consensus_5088#1 TCCGCTACCACGCGCGCCGACGCCGCCGCGCGCCTCGCCGACCTCCGCGACCAGATCCTC 170 ************************************************************ consensus_5088#0 TCCGGCCGCGCCAACTT-CGCCGACCTCGCCGCCCGCCACTCCGACTGCTCCTCCGCGCG 239 consensus_5088#1 TCCGGCCGCGCCAACTTTCGCCGACNTCGCCGCCCGCCANNACGACTGNTCCTCCGCGCG 230 ***************** ******* ************* ****** *********** consensus_5088#0 CCGTGGCGGCGACCT-GGGCACTTTTGGGAGGAGGCAGATGCAGAAACCCTTCGAAGATG 298 consensus_5088#1 CCGTGGCGGCGACCTTGGGCACTTTTGGGAGGAGGCAGATGCAGAAACC-TTCGAAGATG 289 *************** ********************************* ********** consensus_5088#0 CGACATTTGCTCTCAAGGTTGGTGAGATGAGTGACACTGTGGACACTGACAGTGGTGTTC 358 consensus_5088#1 CGACATTTGCTCTCAAGGTTGGTGANATGAGTGA-ACTGTGGA-ACTGACA-TGGTGTTC 346 ************************* ******** ******** ******* ******** consensus_5088#0 ACATCATCCTGCGCACTGCTTAAGATGCTGATATCGATCGTCAGCTGGTTGGCTTCCAAA 418 consensus_5088#1 A-ATCATCT---GCGATTNTTAAGATGCTGATATCGATCGTCA-CTGGTTG-CTTC--AA 398 * ****** ** * ************************ ******* **** ** consensus_5088#0 TGTTATTTTCTGGTAGCCTAAAACTTCANATCANAATGAACCCTGTAACGAATATGATAT 478 consensus_5088#1 TGTA--TTTCTGG-AGCT---AACTTCAATC--AAATGACCT------------------ 432 *** ******* *** ******* ***** * consensus_5088#0 GTTCCGCGACCCGCTTTTGTTTCGACATTTGAGCACATGGTATGGCATGTTTCCGTGATG 538 consensus_5088#1 ------------------------------------------------------------ consensus_5088#0 AACATTTTAATCTCCTANNAAAAAGTTTTCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 598 consensus_5088#1 ------------------------------------------------------------ consensus_5088#0 AAAAAAAAAA 608 consensus_5088#1 ---------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||