cluster # 5090

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Oryza sativa
cluster # 5090 cluster # 5090 Sequences # 3 consensus # 1

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5090#0 length = 438 sequences # 3

consensusID : consensus_5090#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 438
fasta sequence

                              [CCAGGTATTATGAATATACAGCTTCTGTAGAAGGTACCGCTGGTTGGTTGGCTTCTAGTTTCGCCTTGAAGAGAGAAACATAGGGGGGACACAAGATAACTTTTAGAAACATCTTTTTGTTTGATTTGTTTTTTAGTTTTGCTCCATATGACTAGAGTTCACCTTACTGTTTCCACCATCCATGCTAGACCAAAAGGTGCTTCTGGTGCACCTGTATCACACTGATTATTGAGGCTCAAGGTGGCCATCTATAGGATGT-GCTATTATGCGCCAGTACTGTGTAGACTTAAAATTATGGTGGTGTGATACCTCTTGTTACAGTAACCTGTGTTGTTGTACTTGTACTGTATGGAC-ATAGGTTCCAGGCTGTAAAATGGGTTTGTGCTGAGATCAAGAA-CAGTAAAATTAAACTATGCATCTACTATGAAAAAAAAAAAA]

[+] EMBL AU172486             [CCAGGTATTATGAATATACAGCTTCTGTAGAAGGTAGGGCTGGTTGGTTGGCTTCTAGTTTCGCCTTGAAGAGAGAAACATAGGGGGGACACAAGATAACTTTTAGAAACATCTTTTTGTTTGATTTGTTTTTTAGTTTTGCTCCATATGACTANAGTTCACCTTACTGTTTCCNCCATCCATGCTAGACCAAAAGGTGCTTCTGGTGCACCTGTATCACACTGATTATTGAGGCTCAAGGTGGCCATCTATAGGATGT GCTATTATGCGCCAGTACTGTGTAGACTTAAAATTATGGTGGTGTGATACCTCTTGTTACAGTAACCTGTGTTGTTGTACTTGTACTGTATGGACAATAGGTTCCAGGCTGTAAAATGGGTTTGTGCTGAGATCAAGAA CAGTAAAATTAAACTATGCATCTAAAAAAAAAAAAAAAAAA]
[+] EMBL BI799039             [                                    CCGCTGGTTGGTTGGCTTCTAGTTTCGCCTTGAAGAGAGAAACATAGGGGGGACACAAGATAACTTTTAGAAACATCTTTTTGTTTGATTTGTTTTTTAGTTTTGCTCCATATGACTAGAGTTCACCTTACTGTTTCCACCATCCATGCTAGACCCAAAGGTGCTTCTGGTGCACCTGTATCACACTGATTATTGAGGCTCAAGGTGGCCATCTATAGGATGT GCTATTATGCGCCAGTACTGTGTAGACTTAAAATTATGGTGGTGTGATACCTCTTGTTACAGTAACCTGTGTTGTTGTACTTGTACTGTATGGAC ATAGGTTCCAGGCTGTAAAATGGGTTTGTGCTGAGATCAAGAACCAGTAAAATTAAACTATGCATCTACTATGAAAAAA      ]
[+] EMBL BI798527             [                                    CCGCTGGTTGGTTGGCTTCTAGTTTCGCCTTGAAGAGAGAAACATAGGGGGGACACAAGATAACTTTTAGAAACATCTTTTTGTTTGATTTGTTTTTTAGTTTTGCTCCATATGACTAGAGTTCACCTTACTGTTTCCACCATCCATGCTAGACC AAAGGTGCTTCTGGTGCACCTGTATCACACTGATTATTGAGGCTCAAGGTGGCCATCTATAGGATGTCGCTATTATGCGCCAGTACTGTGTAGACTTAAAATTATGGTGGTGTGATACCTCTTGTTACAGTAACCTGTGTTGTTGTACTTGTACTGTATGGAC ATAGGTTCCAGGCTGTAAAATGGGTTTGTGCTGAGATCAAGAA CAGTAAAATTAAACTATGCATCTACTATGAAAAAA      ]




>consensus_5090#0
CCAGGTATTATGAATATACAGCTTCTGTAGAAGGTACCGCTGGTTGGTTGGCTTCTAGTT
TCGCCTTGAAGAGAGAAACATAGGGGGGACACAAGATAACTTTTAGAAACATCTTTTTGT
TTGATTTGTTTTTTAGTTTTGCTCCATATGACTAGAGTTCACCTTACTGTTTCCACCATC
CATGCTAGACCAAAAGGTGCTTCTGGTGCACCTGTATCACACTGATTATTGAGGCTCAAG
GTGGCCATCTATAGGATGTGCTATTATGCGCCAGTACTGTGTAGACTTAAAATTATGGTG
GTGTGATACCTCTTGTTACAGTAACCTGTGTTGTTGTACTTGTACTGTATGGACATAGGT
TCCAGGCTGTAAAATGGGTTTGTGCTGAGATCAAGAACAGTAAAATTAAACTATGCATCT
ACTATGAAAAAAAAAAAA

clustalw multiple alignements is not computed in this case