These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5096#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1876 fasta sequence [TGAAGCGGAGGAGAAGGAAGCATCGCATCCGCCTCCGATCCGGCGATGGCGAGGGCGCCGCCGCCGCTGTCGTCGTTGCCGCCGCCGCCGCGCCGGCCCACGGTGGTGCTGCTTCTGGGGCTGGCCCTCGCCTTCTGCCTCGCCGTCCTCTCCATCCAGTCCTCATTCTTCACCGCTCCGAGGCTGGCGAGTAGGCTGGATCTGGACTCCGACGAGGTCCGCGCGCTCTCGGGCTTCCAGTCCCGCGTCCAGCAGTGCGTGGCAAGAAGGGGACTTGGCCTCACAGCAGATATTATTGATCATTGCAAGCTAGTCCTTAGATTTCCTAAAGGAACCAACAGCACTTGGTACAACACTCAGTTCAAATATTTTGAACCACTAGAATACAACTATGATGTCTGTGAAACTATCCTTCTGTGGGAACAGTACCGTAACATGACGACTGTGTTGACAAGGGAGTACTTAGATGTGCGACCTGATGGGTGGTTGGATTATGCAGCCAAAAGGATTGCACAGCTCGGTGCTGACAAATGCTACAATCGTACTTTGTGCGAAGAGCTTCTTAGTGTTTTACTCCCTGCTAAGCCTCCTTTTCATCCTCGCCAGTTTGCAACATGTGCTGTTGTTGGTAACTCAGGGGATCTCTTGAAAACAGAGTTTGGACAAGAGATTGATGCACATGATGCTGTGTTCCGAGATAATGAAGCACCTGTTAATAAGAAGTATGCAAAATATGTTGGGTTGAAAAGGGACTTTCGACTGGTTGTCAGGGGTGCTGCTCGAAACATGGCGCCAATACTAAAGGGCTCCTCTGATGAGGTTCTTATTATAAAAAGTTTGACGCACAAAGAAATCAATGCGGTGATAAAGGAACTTCCAAACCCAGTTTATCTTTTTCAAGGCATAGTCTTGAGAAGAGGTGCTAAAGGGACTGGTATGAAGTCAATAGAATTGGCCCTTTCCATGTGTGATATTATCGACATGTATGGATTCACAGTTGACCCTAACTACACAGAATGGACAAGGTACTTCTCACCCCCAAGGAAAGGACACAATCCACTGCAAGGGCGGGCTTATTATCAACTTCTGGAGTGCCTTGGAGTAATTCGAATCCATTCCCCCATGAGAGCAAAGAGGGTAGAAGATTGGTCGGATATACCTAGCAGGGAAGAGATCAGAACAGCGCATGCTGCGGCTTTTCGTTTAAAAAGGCATGAAACTGGTCAATCTGATCAAATGGGGCCATTTAGCAACTGCAAGGTATGGGGAACAGTTGACCCAGATTACGGACCTGTATCAGGAACTCCAGACATGAGCGAAACACGAAAGAGCTCAAACTACAAGAAGTGGGAGGTACTCCCATTCGACAGCTTACGAATGGAGGCTCAGGAACACCATGTCCAGATGGGCGGCGTATCTCTGTACAAGATGGATGGAAACAAGCTAGATGATCTTGTTTGTGTGAGACATGAACGTTCATCTAGTTAAGTCAGCACTTAATCTTTGCCTGGAGATGGCATCTTGACCCTGTGGTAATCTTCAGAGGCATATCTACTTGTCAGTTGTAAGATCACAAGAGGCAAAGGATTGAGGCTATTCTTTAGGGTTTCTCATTCCCCTGACAGAAAATATTCTTTTATTGGTTTCTTAGCGACTTTGTAGGGATATTTGCTTAATCAGTCGGAAGAATGTTCCGCTATGGGTACAGCTGTAACGATTTTGGTGCCACTTGCAACATGTACTAGCCATCACGCAATTCTGAACTGCAGTTTTGTTGTTGAGCTAGTAACCTACACCCTGAATTGTAGTACTATAGTTTTTGTTGTTGACACATGTTTTCATTTCACAATGCCATATAAGTGAAAGTCATGTTTGT] [+] EMBL AK101277 [TGAAGCGGAGGAGAAGGAAGCATCGCATCCGCCTCCGATCCGGCGATGGCGAGGGCGCCGCCGCCGCTGTCGTCGTTGCCGCCGCCGCCGCGCCGGCCCACGGTGGTGCTGCTTCTGGGGCTGGCCCTCGCCTTCTGCCTCGCCGTCCTCTCCATCCAGTCCTCATTCTTCACCGCTCCGAGGCTGGCGAGTAGGCTGGATCTGGACTCCGACGAGGTCCGCGCGCTCTCGGGCTTCCAGTCCCGCGTCCAGCAGTGCGTGGCAAGAAGGGGACTTGGCCTCACAGCAGATATTATTGATCATTGCAAGCTAGTCCTTAGATTTCCTAAAGGAACCAACAGCACTTGGTACAACACTCAGTTCAAATATTTTGAACCACTAGAATACAACTATGATGTCTGTGAAACTATCCTTCTGTGGGAACAGTACCGTAACATGACGACTGTGTTGACAAGGGAGTACTTAGATGTGCGACCTGATGGGTGGTTGGATTATGCAGCCAAAAGGATTGCACAGCTCGGTGCTGACAAATGCTACAATCGTACTTTGTGCGAAGAGCTTCTTAGTGTTTTACTCCCTGCTAAGCCTCCTTTTCATCCTCGCCAGTTTGCAACATGTGCTGTTGTTGGTAACTCAGGGGATCTCTTGAAAACAGAGTTTGGACAAGAGATTGATGCACATGATGCTGTGTTCCGAGATAATGAAGCACCTGTTAATAAGAAGTATGCAAAATATGTTGGGTTGAAAAGGGACTTTCGACTGGTTGTCAGGGGTGCTGCTCGAAACATGGCGCCAATACTAAAGGGCTCCTCTGATGAGGTTCTTATTATAAAAAGTTTGACGCACAAAGAAATCAATGCGGTGATAAAGGAACTTCCAAACCCAGTTTATCTTTTTCAAGGCATAGTCTTGAGAAGAGGTGCTAAAGGGACTGGTATGAAGTCAATAGAATTGGCCCTTTCCATGTGTGATATTATCGACATGTATGGATTCACAGTTGACCCTAACTACACAGAATGGACAAGGTACTTCTCACCCCCAAGGAAAGGACACAATCCACTGCAAGGGCGGGCTTATTATCAACTTCTGGAGTGCCTTGGAGTAATTCGAATCCATTCCCCCATGAGAGCAAAGAGGGTAGAAGATTGGTCGGATATACCTAGCAGGGAAGAGATCAGAACAGCGCATGCTGCGGCTTTTCGTTTAAAAAGGCATGAAACTGGTCAATCTGATCAAATGGGGCCATTTAGCAACTGCAAGGTATGGGGAACAGTTGACCCAGATTACGGACCTGTATCAGGAACTCCAGACATGAGCGAAACACGAAAGAGCTCAAACTACAAGAAGTGGGAGGTACTCCCATTCGACAGCTTACGAATGGAGGCTCAGGAACACCATGTCCAGATGGGCGGCGTATCTCTGTACAAGATGGATGGAAACAAGCTAGATGATCTTGTTTGTGTGAGACATGAACGTTCATCTAGTTAAGTCAGCACTTAATCTTTGCCTGGAGATGGCATCTTGACCCTGTGGTAATCTTCAGAGGCATATCTACTTGTCAGTTGTAAGATCACAAGAGGCAAAGGATTGAGGCTATTCTTTAGGGTTTCTCATTCCCCTGACAGAAAATATTCTTTTATTGGTTTCTTAGCGACTTTGTAGGGATATTTGCTTAATCAGTCGGAAGAATGTTCCGCTATGGGTACAGCTGTAACGATTTTGGTGCCACTTGCAACATGTACTAGCCATCACGCAATTCTGAACTGCAGTTTTGTTGTTGAGCTAGTAACCTACACCCTGAATTGTAGTACTATAGTTTTTGTTGTTGACACATGTTTTCATTTCACAATGCCATATAAGTGAAAGTCATGTTTGT] consensusID : consensus_5096#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 867 fasta sequence [CCAGCTAACTTTAATTTGTAGCTCAAATAGTTCTTATAGGAATTTATTATACTTCACTTAAGTTGCTTTCTTCTAATAAATTTTAGATGCATGAGATCACTTCTTATAGTAGTCACCACTGGATGAGCTTTTAAACAGGATGTTTAACTGTCCTGCTTTTGTTGCAGCTGATGAGGTTCTTATTATAAAAAGTTTGACGCACAAAGAAATCAATGCGGTGATAAAGGAACTTCCAAACCCTGTTTATCTTTTTCAAGGCATAGTCTTGAGAAGAGGTGCTAAAGGGACTGGTATGAAGTCAATAGAATTGGCCCTTTCCATGTGTGATATTATCGACATGTATGGATTCACAGTTGACCCTAACTACACAGAATGGACAAGGTACTTCTCACCCCCAAGGAAAGGGCACAATCCACTGCAAGGACGGGCTTATTATCAACTTCTGGAGTGCCTTGGAGTAATTCGAATCCATTCCCCAATGAGAGCAAAGAGGGTAGAAGATTGGTCAGATATACCAANGCAGGGAAGAGATCAGAACAGCGCATGCTGCAGCTTTTCGTTTAAAAAGGCATGAAACTGGTCAATCTGATCAAATGGGGCCATTTAGCAACTGCAAGGTATGGGGGAACAGTTGACCCAGATTACGGACCTGTATCAGGAACTCCAGACATGAGCGAAACACGAAAGAACTCANACTACAGAGTGGGGGAGGTACTCCCATTCGACAGCCTACGAATGGAGGCTCAGGAACACCATGNCCAGATGGGCGGCGTATCTCTGTCCAGNATGGATGGAAACAGCTAGATGATCTTGTTTGTGTGAGCCATGAACCGTCATCTAGTTGAGTCAGCTCTTAAAATCTTGCCT] [+] EMBL CA757826 [CCAGCTAACTTTAATTTGTAGCTCAAATAGTTCTTATAGGAATTTATTATACTTCACTTAAGTTGCTTTCTTCTAATAAATTTTAGATGCATGAGATCACTTCTTATAGTAGTCACCACTGGATGAGCTTTTAAACAGGATGTTTAACTGTCCTGCTTTTGTTGCAGCTGATGAGGTTCTTATTATAAAAAGTTTGACGCACAAAGAAATCAATGCGGTGATAAAGGAACTTCCAAACCCTGTTTATCTTTTTCAAGGCATAGTCTTGAGAAGAGGTGCTAAAGGGACTGGTATGAAGTCAATAGAATTGGCCCTTTCCATGTGTGATATTATCGACATGTATGGATTCACAGTTGACCCTAACTACACAGAATGGACAAGGTACTTCTCACCCCCAAGGAAAGGGCACAATCCACTGCAAGGACGGGCTTATTATCAACTTCTGGAGTGCCTTGGAGTAATTCGAATCCATTCCCCAATGAGAGCAAAGAGGGTAGAAGATTGGTCAGATATACCAANGCAGGGAAGAGATCAGAACAGCGCATGCTGCAGCTTTTCGTTTAAAAAGGCATGAAACTGGTCAATCTGATCAAATGGGGCCATTTAGCAACTGCAAGGTATGGGGGAACAGTTGACCCAGATTACGGACCTGTATCAGGAACTCCAGACATGAGCGAAACACGAAAGAACTCANACTACAGAGTGGGGGAGGTACTCCCATTCGACAGCCTACGAATGGAGGCTCAGGAACACCATGNCCAGATGGGCGGCGTATCTCTGTCCAGNATGGATGGAAACAGCTAGATGATCTTGTTTGTGTGAGCCATGAACCGTCATCTAGTTGAGTCAGCTCTTAAAATCTTGCCT] consensusID : consensus_5096#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 257 fasta sequence [GGGTGCTGTTTTTAGGGGGATTAGATNTGCCTCTATATTCACGTTCCGGGAAAGGATGGGTCCCGCTANTGGGTTATTAAGCTGTATACCGATCTTTTGGGTGTCACTTGCAACATGTACTAGCCATCACGCAATTCTGAAGTGCAGTTTTGTTGTTGAGCTAGTAACCCACACCCTGAATTGTAGTACTATAGTTTTTGTTGTTGACACATGTTTTCATTTCACAATGCCATATAAGTGAAATTCCAAAAAAAAAA] [+] EMBL BQ908778 [GGGTGCTGTTTTTAGGGGGATTAGATNTGCCTCTATATTCACGTTCCGGGAAAGGATGGGTCCCGCTANTGGGTTATTAAGCTGTATACCGATCTTTTGGGTGTCACTTGCAACATGTACTAGCCATCACGCAATTCTGAAGTGCAGTTTTGTTGTTGAGCTAGTAACCCACACCCTGAATTGTAGTACTATAGTTTTTGTTGTTGACACATGTTTTCATTTCACAATGCCATATAAGTGAAATTCCAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5096#0 TGAAGCGGAGGAGAAGGAAGCATCGCATCCGCCTCCGATCCGGCGATGGCGAGGGCGCCG 60 consensus_5096#1 ------------------------------------------------------------ consensus_5096#2 ------------------------------------------------------------ consensus_5096#0 CCGCCGCTGTCGTCGTTGCCGCCGCCGCCGCGCCGGCCCACGGTGGTGCTGCTTCTGGGG 120 consensus_5096#1 ------------------------------------------------------------ consensus_5096#2 ------------------------------------------------------------ consensus_5096#0 CTGGCCCTCGCCTTCTGCCTCGCCGTCCTCTCCATCCAGTCCTCATTCTTCACCGCTCCG 180 consensus_5096#1 ------------------------------------------------------------ consensus_5096#2 ------------------------------------------------------------ consensus_5096#0 AGGCTGGCGAGTAGGCTGGATCTGGACTCCGACGAGGTCCGCGCGCTCTCGGGCTTCCAG 240 consensus_5096#1 ------------------------------------------------------------ consensus_5096#2 ------------------------------------------------------------ consensus_5096#0 TCCCGCGTCCAGCAGTGCGTGGCAAGAAGGGGACTTGGCCTCACAGCAGATATTATTGAT 300 consensus_5096#1 ------------------------------------------------------------ consensus_5096#2 ------------------------------------------------------------ consensus_5096#0 CATTGCAAGCTAGTCCTTAGATTTCCTAAAGGAACCAACAGCACTTGGTACAACACTCAG 360 consensus_5096#1 ------------------------------------------------------------ consensus_5096#2 ------------------------------------------------------------ consensus_5096#0 TTCAAATATTTTGAACCACTAGAATACAACTATGATGTCTGTGAAACTATCCTTCTGTGG 420 consensus_5096#1 ------------------------------------------------------------ consensus_5096#2 ------------------------------------------------------------ consensus_5096#0 GAACAGTACCGTAACATGACGACTGTGTTGACAAGGGAGTACTTAGATGTGCGACCTGAT 480 consensus_5096#1 ------------------------------------------------------------ consensus_5096#2 ------------------------------------------------------------ consensus_5096#0 GGGTGGTTGGATTATGCAGCCAAAAGGATTGCACAGCTCGGTGCTGACAAATGCTACAAT 540 consensus_5096#1 ------------------------------------------------------------ consensus_5096#2 ------------------------------------------------------------ consensus_5096#0 CGTACTTTGTGCGAAGAGCTTCTTAGTGTTTTACTCCCTGCTAAGCCTCCTTTTCATCCT 600 consensus_5096#1 ------------------------------------------------------------ consensus_5096#2 ------------------------------------------------------------ consensus_5096#0 CGCCAGTTTGCAACATGTGCTGTTGTTGGTAACTCAGGGGATCTCTTGAAAACAGAGTTT 660 consensus_5096#1 ------------------------CCAGCTAACTTTA---ATTTGTAGCTCAAATAGTTC 33 consensus_5096#2 ------------------------------------------------------------ consensus_5096#0 GGACAAGAGATTGATGCACATGATGCTGTGTTCCGAGATAATGAAGCACCTGTTAATAAG 720 consensus_5096#1 TTATAGGAATTTATTATACTTCAC-TTAAGTTGCTTTCTTCTAA--------TAAATTTT 84 consensus_5096#2 ------------------------------------------------------------ consensus_5096#0 AAGTATGCAAAATATGTTGGGTTGAAAAGGGACTTTCGACTGGTTGTCAGGGGTGCTGCT 780 consensus_5096#1 AGATGCATGAGATCACTTCTTATAGTAGTCACCACTGGATGAGCTTTTAAACAGGATGTT 144 consensus_5096#2 ------------------------------------------------------------ consensus_5096#0 CGAAACATGGCGCCAATACTAAAGGGCTCCTCTGATGAGGTTCTTATTATAAAAAGTTTG 840 consensus_5096#1 T-AACTGTCCTGCTTTTGTTGCAG-------CTGATGAGGTTCTTATTATAAAAAGTTTG 196 consensus_5096#2 ------------------------------------------------------------ consensus_5096#0 ACGCACAAAGAAATCAATGCGGTGATAAAGGAACTTCCAAACCCAGTTTATCTTTTTCAA 900 consensus_5096#1 ACGCACAAAGAAATCAATGCGGTGATAAAGGAACTTCCAAACCCTGTTTATCTTTTTCAA 256 consensus_5096#2 ------------------------------------------------------------ consensus_5096#0 GGCATAGTCTTGAGAAGAGGTGCTAAAGGGACTGGTATGAAGTCAATAGAATTGGCCCTT 960 consensus_5096#1 GGCATAGTCTTGAGAAGAGGTGCTAAAGGGACTGGTATGAAGTCAATAGAATTGGCCCTT 316 consensus_5096#2 ------------------------------------------------------------ consensus_5096#0 TCCATGTGTGATATTATCGACATGTATGGATTCACAGTTGACCCTAACTACACAGAATGG 1020 consensus_5096#1 TCCATGTGTGATATTATCGACATGTATGGATTCACAGTTGACCCTAACTACACAGAATGG 376 consensus_5096#2 ------------------------------------------------------------ consensus_5096#0 ACAAGGTACTTCTCACCCCCAAGGAAAGGACACAATCCACTGCAAGGGCGGGCTTATTAT 1080 consensus_5096#1 ACAAGGTACTTCTCACCCCCAAGGAAAGGGCACAATCCACTGCAAGGACGGGCTTATTAT 436 consensus_5096#2 ------------------------------------------------------------ consensus_5096#0 CAACTTCTGGAGTGCCTTGGAGTAATTCGAATCCATTCCCCCATGAGAGCAAAGAGGGTA 1140 consensus_5096#1 CAACTTCTGGAGTGCCTTGGAGTAATTCGAATCCATTCCCCAATGAGAGCAAAGAGGGTA 496 consensus_5096#2 ------------------------------------------------------------ consensus_5096#0 GAAGATTGGTCGGATATACCTAG-CAGGGAAGAGATCAGAACAGCGCATGCTGCGGCTTT 1199 consensus_5096#1 GAAGATTGGTCAGATATACCAANGCAGGGAAGAGATCAGAACAGCGCATGCTGCAGCTTT 556 consensus_5096#2 -------------------------------------------------------GGGTG 5 * * consensus_5096#0 TCGTTTAAAAAGGCATGAAACTGGTCAATCTGATCAAATGGGGCCATTTAGCAACTGCAA 1259 consensus_5096#1 TCGTTTAAAAAGGCATGAAACTGGTCAATCTGATCAAATGGGGCCATTTAGCAACTGCAA 616 consensus_5096#2 CTGTTTTTAGGGGGATTAGATNTGCCTCTATATTCACGTTCCGGGAAAGGATGGGT-CCC 64 **** * ** ** * * * * * * *** * * * * * consensus_5096#0 GGTATGGGG-AACAGTTGACCCAGATTACGGACCTGTATCAGGAACTCCAGACATGAGCG 1318 consensus_5096#1 GGTATGGGGGAACAGTTGACCCAGATTACGGACCTGTATCAGGAACTCCAGACATGAGCG 676 consensus_5096#2 GCTANTGGG---TTATTAAGCTGTATACCGATCTTTTGGGTGTCACTTGCAACATGTACT 121 * ** *** ** * * ** ** * * * * *** ***** * consensus_5096#0 AAACACGAAAGAGCTC-AAACTACAAGAAGTGGGAGGTACTCCCATTCGACAGCTTACGA 1377 consensus_5096#1 AAACACGAAAGAACTC-ANACTACAGAGTGGGGGAGGTACTCCCATTCGACAGCCTACGA 735 consensus_5096#2 AGCCATCACGCAATTCTGAAGTGCAGTTTTGTTGTTGAGCTAGTAACCCACACCCTG-AA 180 * ** * * ** * * ** * * ** * * *** * * * consensus_5096#0 ATGGAGGCTCAGGAACACCAT-GTCCAGATGGGCGG-CGTATCTCTGTACAAGATGGATG 1435 consensus_5096#1 ATGGAGGCTCAGGAACACCAT-GNCCAGATGGGCGG-CGTATCTCTGTCCAGNATGGATG 793 consensus_5096#2 TTGTAGTACTATAGTTTTTGTTGTTGACACATGTTTTCATTTCACAATGCCATATAAGTG 240 ** ** * * * * * * * * ** * * * ** ** consensus_5096#0 GAAACAAGCTAGATGATCTTGTTTGTGTGAGACATGAACGTTCATCTAGTTAAGTCAGCA 1495 consensus_5096#1 GAAACA-GCTAGATGATCTTGTTTGTGTGAGCCATGAACCGTCATCTAGTTGAGTCAGCT 852 consensus_5096#2 AAATTCCAAAAAAAAAA------------------------------------------- 257 ** * * * consensus_5096#0 CTTAATCT-TTGCCTGGAGATGGCATCTTGACCCTGTGGTAATCTTCAGAGGCATATCTA 1554 consensus_5096#1 CTTAAAATCTTGCCT--------------------------------------------- 867 consensus_5096#2 ------------------------------------------------------------ consensus_5096#0 CTTGTCAGTTGTAAGATCACAAGAGGCAAAGGATTGAGGCTATTCTTTAGGGTTTCTCAT 1614 consensus_5096#1 ------------------------------------------------------------ consensus_5096#2 ------------------------------------------------------------ consensus_5096#0 TCCCCTGACAGAAAATATTCTTTTATTGGTTTCTTAGCGACTTTGTAGGGATATTTGCTT 1674 consensus_5096#1 ------------------------------------------------------------ consensus_5096#2 ------------------------------------------------------------ consensus_5096#0 AATCAGTCGGAAGAATGTTCCGCTATGGGTACAGCTGTAACGATTTTGGTGCCACTTGCA 1734 consensus_5096#1 ------------------------------------------------------------ consensus_5096#2 ------------------------------------------------------------ consensus_5096#0 ACATGTACTAGCCATCACGCAATTCTGAACTGCAGTTTTGTTGTTGAGCTAGTAACCTAC 1794 consensus_5096#1 ------------------------------------------------------------ consensus_5096#2 ------------------------------------------------------------ consensus_5096#0 ACCCTGAATTGTAGTACTATAGTTTTTGTTGTTGACACATGTTTTCATTTCACAATGCCA 1854 consensus_5096#1 ------------------------------------------------------------ consensus_5096#2 ------------------------------------------------------------ consensus_5096#0 TATAAGTGAAAGTCATGTTTGT 1876 consensus_5096#1 ---------------------- consensus_5096#2 ---------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||