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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5096#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1876 fasta sequence
[TGAAGCGGAGGAGAAGGAAGCATCGCATCCGCCTCCGATCCGGCGATGGCGAGGGCGCCGCCGCCGCTGTCGTCGTTGCCGCCGCCGCCGCGCCGGCCCACGGTGGTGCTGCTTCTGGGGCTGGCCCTCGCCTTCTGCCTCGCCGTCCTCTCCATCCAGTCCTCATTCTTCACCGCTCCGAGGCTGGCGAGTAGGCTGGATCTGGACTCCGACGAGGTCCGCGCGCTCTCGGGCTTCCAGTCCCGCGTCCAGCAGTGCGTGGCAAGAAGGGGACTTGGCCTCACAGCAGATATTATTGATCATTGCAAGCTAGTCCTTAGATTTCCTAAAGGAACCAACAGCACTTGGTACAACACTCAGTTCAAATATTTTGAACCACTAGAATACAACTATGATGTCTGTGAAACTATCCTTCTGTGGGAACAGTACCGTAACATGACGACTGTGTTGACAAGGGAGTACTTAGATGTGCGACCTGATGGGTGGTTGGATTATGCAGCCAAAAGGATTGCACAGCTCGGTGCTGACAAATGCTACAATCGTACTTTGTGCGAAGAGCTTCTTAGTGTTTTACTCCCTGCTAAGCCTCCTTTTCATCCTCGCCAGTTTGCAACATGTGCTGTTGTTGGTAACTCAGGGGATCTCTTGAAAACAGAGTTTGGACAAGAGATTGATGCACATGATGCTGTGTTCCGAGATAATGAAGCACCTGTTAATAAGAAGTATGCAAAATATGTTGGGTTGAAAAGGGACTTTCGACTGGTTGTCAGGGGTGCTGCTCGAAACATGGCGCCAATACTAAAGGGCTCCTCTGATGAGGTTCTTATTATAAAAAGTTTGACGCACAAAGAAATCAATGCGGTGATAAAGGAACTTCCAAACCCAGTTTATCTTTTTCAAGGCATAGTCTTGAGAAGAGGTGCTAAAGGGACTGGTATGAAGTCAATAGAATTGGCCCTTTCCATGTGTGATATTATCGACATGTATGGATTCACAGTTGACCCTAACTACACAGAATGGACAAGGTACTTCTCACCCCCAAGGAAAGGACACAATCCACTGCAAGGGCGGGCTTATTATCAACTTCTGGAGTGCCTTGGAGTAATTCGAATCCATTCCCCCATGAGAGCAAAGAGGGTAGAAGATTGGTCGGATATACCTAGCAGGGAAGAGATCAGAACAGCGCATGCTGCGGCTTTTCGTTTAAAAAGGCATGAAACTGGTCAATCTGATCAAATGGGGCCATTTAGCAACTGCAAGGTATGGGGAACAGTTGACCCAGATTACGGACCTGTATCAGGAACTCCAGACATGAGCGAAACACGAAAGAGCTCAAACTACAAGAAGTGGGAGGTACTCCCATTCGACAGCTTACGAATGGAGGCTCAGGAACACCATGTCCAGATGGGCGGCGTATCTCTGTACAAGATGGATGGAAACAAGCTAGATGATCTTGTTTGTGTGAGACATGAACGTTCATCTAGTTAAGTCAGCACTTAATCTTTGCCTGGAGATGGCATCTTGACCCTGTGGTAATCTTCAGAGGCATATCTACTTGTCAGTTGTAAGATCACAAGAGGCAAAGGATTGAGGCTATTCTTTAGGGTTTCTCATTCCCCTGACAGAAAATATTCTTTTATTGGTTTCTTAGCGACTTTGTAGGGATATTTGCTTAATCAGTCGGAAGAATGTTCCGCTATGGGTACAGCTGTAACGATTTTGGTGCCACTTGCAACATGTACTAGCCATCACGCAATTCTGAACTGCAGTTTTGTTGTTGAGCTAGTAACCTACACCCTGAATTGTAGTACTATAGTTTTTGTTGTTGACACATGTTTTCATTTCACAATGCCATATAAGTGAAAGTCATGTTTGT]
[+] EMBL AK101277 [TGAAGCGGAGGAGAAGGAAGCATCGCATCCGCCTCCGATCCGGCGATGGCGAGGGCGCCGCCGCCGCTGTCGTCGTTGCCGCCGCCGCCGCGCCGGCCCACGGTGGTGCTGCTTCTGGGGCTGGCCCTCGCCTTCTGCCTCGCCGTCCTCTCCATCCAGTCCTCATTCTTCACCGCTCCGAGGCTGGCGAGTAGGCTGGATCTGGACTCCGACGAGGTCCGCGCGCTCTCGGGCTTCCAGTCCCGCGTCCAGCAGTGCGTGGCAAGAAGGGGACTTGGCCTCACAGCAGATATTATTGATCATTGCAAGCTAGTCCTTAGATTTCCTAAAGGAACCAACAGCACTTGGTACAACACTCAGTTCAAATATTTTGAACCACTAGAATACAACTATGATGTCTGTGAAACTATCCTTCTGTGGGAACAGTACCGTAACATGACGACTGTGTTGACAAGGGAGTACTTAGATGTGCGACCTGATGGGTGGTTGGATTATGCAGCCAAAAGGATTGCACAGCTCGGTGCTGACAAATGCTACAATCGTACTTTGTGCGAAGAGCTTCTTAGTGTTTTACTCCCTGCTAAGCCTCCTTTTCATCCTCGCCAGTTTGCAACATGTGCTGTTGTTGGTAACTCAGGGGATCTCTTGAAAACAGAGTTTGGACAAGAGATTGATGCACATGATGCTGTGTTCCGAGATAATGAAGCACCTGTTAATAAGAAGTATGCAAAATATGTTGGGTTGAAAAGGGACTTTCGACTGGTTGTCAGGGGTGCTGCTCGAAACATGGCGCCAATACTAAAGGGCTCCTCTGATGAGGTTCTTATTATAAAAAGTTTGACGCACAAAGAAATCAATGCGGTGATAAAGGAACTTCCAAACCCAGTTTATCTTTTTCAAGGCATAGTCTTGAGAAGAGGTGCTAAAGGGACTGGTATGAAGTCAATAGAATTGGCCCTTTCCATGTGTGATATTATCGACATGTATGGATTCACAGTTGACCCTAACTACACAGAATGGACAAGGTACTTCTCACCCCCAAGGAAAGGACACAATCCACTGCAAGGGCGGGCTTATTATCAACTTCTGGAGTGCCTTGGAGTAATTCGAATCCATTCCCCCATGAGAGCAAAGAGGGTAGAAGATTGGTCGGATATACCTAGCAGGGAAGAGATCAGAACAGCGCATGCTGCGGCTTTTCGTTTAAAAAGGCATGAAACTGGTCAATCTGATCAAATGGGGCCATTTAGCAACTGCAAGGTATGGGGAACAGTTGACCCAGATTACGGACCTGTATCAGGAACTCCAGACATGAGCGAAACACGAAAGAGCTCAAACTACAAGAAGTGGGAGGTACTCCCATTCGACAGCTTACGAATGGAGGCTCAGGAACACCATGTCCAGATGGGCGGCGTATCTCTGTACAAGATGGATGGAAACAAGCTAGATGATCTTGTTTGTGTGAGACATGAACGTTCATCTAGTTAAGTCAGCACTTAATCTTTGCCTGGAGATGGCATCTTGACCCTGTGGTAATCTTCAGAGGCATATCTACTTGTCAGTTGTAAGATCACAAGAGGCAAAGGATTGAGGCTATTCTTTAGGGTTTCTCATTCCCCTGACAGAAAATATTCTTTTATTGGTTTCTTAGCGACTTTGTAGGGATATTTGCTTAATCAGTCGGAAGAATGTTCCGCTATGGGTACAGCTGTAACGATTTTGGTGCCACTTGCAACATGTACTAGCCATCACGCAATTCTGAACTGCAGTTTTGTTGTTGAGCTAGTAACCTACACCCTGAATTGTAGTACTATAGTTTTTGTTGTTGACACATGTTTTCATTTCACAATGCCATATAAGTGAAAGTCATGTTTGT]
consensusID : consensus_5096#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 867 fasta sequence
[CCAGCTAACTTTAATTTGTAGCTCAAATAGTTCTTATAGGAATTTATTATACTTCACTTAAGTTGCTTTCTTCTAATAAATTTTAGATGCATGAGATCACTTCTTATAGTAGTCACCACTGGATGAGCTTTTAAACAGGATGTTTAACTGTCCTGCTTTTGTTGCAGCTGATGAGGTTCTTATTATAAAAAGTTTGACGCACAAAGAAATCAATGCGGTGATAAAGGAACTTCCAAACCCTGTTTATCTTTTTCAAGGCATAGTCTTGAGAAGAGGTGCTAAAGGGACTGGTATGAAGTCAATAGAATTGGCCCTTTCCATGTGTGATATTATCGACATGTATGGATTCACAGTTGACCCTAACTACACAGAATGGACAAGGTACTTCTCACCCCCAAGGAAAGGGCACAATCCACTGCAAGGACGGGCTTATTATCAACTTCTGGAGTGCCTTGGAGTAATTCGAATCCATTCCCCAATGAGAGCAAAGAGGGTAGAAGATTGGTCAGATATACCAANGCAGGGAAGAGATCAGAACAGCGCATGCTGCAGCTTTTCGTTTAAAAAGGCATGAAACTGGTCAATCTGATCAAATGGGGCCATTTAGCAACTGCAAGGTATGGGGGAACAGTTGACCCAGATTACGGACCTGTATCAGGAACTCCAGACATGAGCGAAACACGAAAGAACTCANACTACAGAGTGGGGGAGGTACTCCCATTCGACAGCCTACGAATGGAGGCTCAGGAACACCATGNCCAGATGGGCGGCGTATCTCTGTCCAGNATGGATGGAAACAGCTAGATGATCTTGTTTGTGTGAGCCATGAACCGTCATCTAGTTGAGTCAGCTCTTAAAATCTTGCCT]
[+] EMBL CA757826 [CCAGCTAACTTTAATTTGTAGCTCAAATAGTTCTTATAGGAATTTATTATACTTCACTTAAGTTGCTTTCTTCTAATAAATTTTAGATGCATGAGATCACTTCTTATAGTAGTCACCACTGGATGAGCTTTTAAACAGGATGTTTAACTGTCCTGCTTTTGTTGCAGCTGATGAGGTTCTTATTATAAAAAGTTTGACGCACAAAGAAATCAATGCGGTGATAAAGGAACTTCCAAACCCTGTTTATCTTTTTCAAGGCATAGTCTTGAGAAGAGGTGCTAAAGGGACTGGTATGAAGTCAATAGAATTGGCCCTTTCCATGTGTGATATTATCGACATGTATGGATTCACAGTTGACCCTAACTACACAGAATGGACAAGGTACTTCTCACCCCCAAGGAAAGGGCACAATCCACTGCAAGGACGGGCTTATTATCAACTTCTGGAGTGCCTTGGAGTAATTCGAATCCATTCCCCAATGAGAGCAAAGAGGGTAGAAGATTGGTCAGATATACCAANGCAGGGAAGAGATCAGAACAGCGCATGCTGCAGCTTTTCGTTTAAAAAGGCATGAAACTGGTCAATCTGATCAAATGGGGCCATTTAGCAACTGCAAGGTATGGGGGAACAGTTGACCCAGATTACGGACCTGTATCAGGAACTCCAGACATGAGCGAAACACGAAAGAACTCANACTACAGAGTGGGGGAGGTACTCCCATTCGACAGCCTACGAATGGAGGCTCAGGAACACCATGNCCAGATGGGCGGCGTATCTCTGTCCAGNATGGATGGAAACAGCTAGATGATCTTGTTTGTGTGAGCCATGAACCGTCATCTAGTTGAGTCAGCTCTTAAAATCTTGCCT]
consensusID : consensus_5096#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 257 fasta sequence
[GGGTGCTGTTTTTAGGGGGATTAGATNTGCCTCTATATTCACGTTCCGGGAAAGGATGGGTCCCGCTANTGGGTTATTAAGCTGTATACCGATCTTTTGGGTGTCACTTGCAACATGTACTAGCCATCACGCAATTCTGAAGTGCAGTTTTGTTGTTGAGCTAGTAACCCACACCCTGAATTGTAGTACTATAGTTTTTGTTGTTGACACATGTTTTCATTTCACAATGCCATATAAGTGAAATTCCAAAAAAAAAA]
[+] EMBL BQ908778 [GGGTGCTGTTTTTAGGGGGATTAGATNTGCCTCTATATTCACGTTCCGGGAAAGGATGGGTCCCGCTANTGGGTTATTAAGCTGTATACCGATCTTTTGGGTGTCACTTGCAACATGTACTAGCCATCACGCAATTCTGAAGTGCAGTTTTGTTGTTGAGCTAGTAACCCACACCCTGAATTGTAGTACTATAGTTTTTGTTGTTGACACATGTTTTCATTTCACAATGCCATATAAGTGAAATTCCAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5096#0 TGAAGCGGAGGAGAAGGAAGCATCGCATCCGCCTCCGATCCGGCGATGGCGAGGGCGCCG 60
consensus_5096#1 ------------------------------------------------------------
consensus_5096#2 ------------------------------------------------------------
consensus_5096#0 CCGCCGCTGTCGTCGTTGCCGCCGCCGCCGCGCCGGCCCACGGTGGTGCTGCTTCTGGGG 120
consensus_5096#1 ------------------------------------------------------------
consensus_5096#2 ------------------------------------------------------------
consensus_5096#0 CTGGCCCTCGCCTTCTGCCTCGCCGTCCTCTCCATCCAGTCCTCATTCTTCACCGCTCCG 180
consensus_5096#1 ------------------------------------------------------------
consensus_5096#2 ------------------------------------------------------------
consensus_5096#0 AGGCTGGCGAGTAGGCTGGATCTGGACTCCGACGAGGTCCGCGCGCTCTCGGGCTTCCAG 240
consensus_5096#1 ------------------------------------------------------------
consensus_5096#2 ------------------------------------------------------------
consensus_5096#0 TCCCGCGTCCAGCAGTGCGTGGCAAGAAGGGGACTTGGCCTCACAGCAGATATTATTGAT 300
consensus_5096#1 ------------------------------------------------------------
consensus_5096#2 ------------------------------------------------------------
consensus_5096#0 CATTGCAAGCTAGTCCTTAGATTTCCTAAAGGAACCAACAGCACTTGGTACAACACTCAG 360
consensus_5096#1 ------------------------------------------------------------
consensus_5096#2 ------------------------------------------------------------
consensus_5096#0 TTCAAATATTTTGAACCACTAGAATACAACTATGATGTCTGTGAAACTATCCTTCTGTGG 420
consensus_5096#1 ------------------------------------------------------------
consensus_5096#2 ------------------------------------------------------------
consensus_5096#0 GAACAGTACCGTAACATGACGACTGTGTTGACAAGGGAGTACTTAGATGTGCGACCTGAT 480
consensus_5096#1 ------------------------------------------------------------
consensus_5096#2 ------------------------------------------------------------
consensus_5096#0 GGGTGGTTGGATTATGCAGCCAAAAGGATTGCACAGCTCGGTGCTGACAAATGCTACAAT 540
consensus_5096#1 ------------------------------------------------------------
consensus_5096#2 ------------------------------------------------------------
consensus_5096#0 CGTACTTTGTGCGAAGAGCTTCTTAGTGTTTTACTCCCTGCTAAGCCTCCTTTTCATCCT 600
consensus_5096#1 ------------------------------------------------------------
consensus_5096#2 ------------------------------------------------------------
consensus_5096#0 CGCCAGTTTGCAACATGTGCTGTTGTTGGTAACTCAGGGGATCTCTTGAAAACAGAGTTT 660
consensus_5096#1 ------------------------CCAGCTAACTTTA---ATTTGTAGCTCAAATAGTTC 33
consensus_5096#2 ------------------------------------------------------------
consensus_5096#0 GGACAAGAGATTGATGCACATGATGCTGTGTTCCGAGATAATGAAGCACCTGTTAATAAG 720
consensus_5096#1 TTATAGGAATTTATTATACTTCAC-TTAAGTTGCTTTCTTCTAA--------TAAATTTT 84
consensus_5096#2 ------------------------------------------------------------
consensus_5096#0 AAGTATGCAAAATATGTTGGGTTGAAAAGGGACTTTCGACTGGTTGTCAGGGGTGCTGCT 780
consensus_5096#1 AGATGCATGAGATCACTTCTTATAGTAGTCACCACTGGATGAGCTTTTAAACAGGATGTT 144
consensus_5096#2 ------------------------------------------------------------
consensus_5096#0 CGAAACATGGCGCCAATACTAAAGGGCTCCTCTGATGAGGTTCTTATTATAAAAAGTTTG 840
consensus_5096#1 T-AACTGTCCTGCTTTTGTTGCAG-------CTGATGAGGTTCTTATTATAAAAAGTTTG 196
consensus_5096#2 ------------------------------------------------------------
consensus_5096#0 ACGCACAAAGAAATCAATGCGGTGATAAAGGAACTTCCAAACCCAGTTTATCTTTTTCAA 900
consensus_5096#1 ACGCACAAAGAAATCAATGCGGTGATAAAGGAACTTCCAAACCCTGTTTATCTTTTTCAA 256
consensus_5096#2 ------------------------------------------------------------
consensus_5096#0 GGCATAGTCTTGAGAAGAGGTGCTAAAGGGACTGGTATGAAGTCAATAGAATTGGCCCTT 960
consensus_5096#1 GGCATAGTCTTGAGAAGAGGTGCTAAAGGGACTGGTATGAAGTCAATAGAATTGGCCCTT 316
consensus_5096#2 ------------------------------------------------------------
consensus_5096#0 TCCATGTGTGATATTATCGACATGTATGGATTCACAGTTGACCCTAACTACACAGAATGG 1020
consensus_5096#1 TCCATGTGTGATATTATCGACATGTATGGATTCACAGTTGACCCTAACTACACAGAATGG 376
consensus_5096#2 ------------------------------------------------------------
consensus_5096#0 ACAAGGTACTTCTCACCCCCAAGGAAAGGACACAATCCACTGCAAGGGCGGGCTTATTAT 1080
consensus_5096#1 ACAAGGTACTTCTCACCCCCAAGGAAAGGGCACAATCCACTGCAAGGACGGGCTTATTAT 436
consensus_5096#2 ------------------------------------------------------------
consensus_5096#0 CAACTTCTGGAGTGCCTTGGAGTAATTCGAATCCATTCCCCCATGAGAGCAAAGAGGGTA 1140
consensus_5096#1 CAACTTCTGGAGTGCCTTGGAGTAATTCGAATCCATTCCCCAATGAGAGCAAAGAGGGTA 496
consensus_5096#2 ------------------------------------------------------------
consensus_5096#0 GAAGATTGGTCGGATATACCTAG-CAGGGAAGAGATCAGAACAGCGCATGCTGCGGCTTT 1199
consensus_5096#1 GAAGATTGGTCAGATATACCAANGCAGGGAAGAGATCAGAACAGCGCATGCTGCAGCTTT 556
consensus_5096#2 -------------------------------------------------------GGGTG 5
* *
consensus_5096#0 TCGTTTAAAAAGGCATGAAACTGGTCAATCTGATCAAATGGGGCCATTTAGCAACTGCAA 1259
consensus_5096#1 TCGTTTAAAAAGGCATGAAACTGGTCAATCTGATCAAATGGGGCCATTTAGCAACTGCAA 616
consensus_5096#2 CTGTTTTTAGGGGGATTAGATNTGCCTCTATATTCACGTTCCGGGAAAGGATGGGT-CCC 64
**** * ** ** * * * * * * *** * * * * *
consensus_5096#0 GGTATGGGG-AACAGTTGACCCAGATTACGGACCTGTATCAGGAACTCCAGACATGAGCG 1318
consensus_5096#1 GGTATGGGGGAACAGTTGACCCAGATTACGGACCTGTATCAGGAACTCCAGACATGAGCG 676
consensus_5096#2 GCTANTGGG---TTATTAAGCTGTATACCGATCTTTTGGGTGTCACTTGCAACATGTACT 121
* ** *** ** * * ** ** * * * * *** ***** *
consensus_5096#0 AAACACGAAAGAGCTC-AAACTACAAGAAGTGGGAGGTACTCCCATTCGACAGCTTACGA 1377
consensus_5096#1 AAACACGAAAGAACTC-ANACTACAGAGTGGGGGAGGTACTCCCATTCGACAGCCTACGA 735
consensus_5096#2 AGCCATCACGCAATTCTGAAGTGCAGTTTTGTTGTTGAGCTAGTAACCCACACCCTG-AA 180
* ** * * ** * * ** * * ** * * *** * * *
consensus_5096#0 ATGGAGGCTCAGGAACACCAT-GTCCAGATGGGCGG-CGTATCTCTGTACAAGATGGATG 1435
consensus_5096#1 ATGGAGGCTCAGGAACACCAT-GNCCAGATGGGCGG-CGTATCTCTGTCCAGNATGGATG 793
consensus_5096#2 TTGTAGTACTATAGTTTTTGTTGTTGACACATGTTTTCATTTCACAATGCCATATAAGTG 240
** ** * * * * * * * * ** * * * ** **
consensus_5096#0 GAAACAAGCTAGATGATCTTGTTTGTGTGAGACATGAACGTTCATCTAGTTAAGTCAGCA 1495
consensus_5096#1 GAAACA-GCTAGATGATCTTGTTTGTGTGAGCCATGAACCGTCATCTAGTTGAGTCAGCT 852
consensus_5096#2 AAATTCCAAAAAAAAAA------------------------------------------- 257
** * * *
consensus_5096#0 CTTAATCT-TTGCCTGGAGATGGCATCTTGACCCTGTGGTAATCTTCAGAGGCATATCTA 1554
consensus_5096#1 CTTAAAATCTTGCCT--------------------------------------------- 867
consensus_5096#2 ------------------------------------------------------------
consensus_5096#0 CTTGTCAGTTGTAAGATCACAAGAGGCAAAGGATTGAGGCTATTCTTTAGGGTTTCTCAT 1614
consensus_5096#1 ------------------------------------------------------------
consensus_5096#2 ------------------------------------------------------------
consensus_5096#0 TCCCCTGACAGAAAATATTCTTTTATTGGTTTCTTAGCGACTTTGTAGGGATATTTGCTT 1674
consensus_5096#1 ------------------------------------------------------------
consensus_5096#2 ------------------------------------------------------------
consensus_5096#0 AATCAGTCGGAAGAATGTTCCGCTATGGGTACAGCTGTAACGATTTTGGTGCCACTTGCA 1734
consensus_5096#1 ------------------------------------------------------------
consensus_5096#2 ------------------------------------------------------------
consensus_5096#0 ACATGTACTAGCCATCACGCAATTCTGAACTGCAGTTTTGTTGTTGAGCTAGTAACCTAC 1794
consensus_5096#1 ------------------------------------------------------------
consensus_5096#2 ------------------------------------------------------------
consensus_5096#0 ACCCTGAATTGTAGTACTATAGTTTTTGTTGTTGACACATGTTTTCATTTCACAATGCCA 1854
consensus_5096#1 ------------------------------------------------------------
consensus_5096#2 ------------------------------------------------------------
consensus_5096#0 TATAAGTGAAAGTCATGTTTGT 1876
consensus_5096#1 ----------------------
consensus_5096#2 ----------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||