These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_510#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 841 fasta sequence [CTTGCGTTGCACTGCAGGCAAGACCTCCTTGATAGTCCGTCCAACCAGCACTCCCCCAATCATTCTGTAGCAGCGCCTCGAGGGGTCAAGTGGCTCGATTGCACCGATCACGAGGGAGTGCTCACTGACTTCCATTTCCAGCTCTGTGATCTTGGAGTAGAGTTGATTCATTTCAGAGCGCATGTTGGCATACATGTTTGCAACCATTTGCTCGTTGATGACTTCTTTGTCAGCACCACTTGGTTGACCAGCCATTTTGCTTGGAATCCACTAAAACATAAATAGATTACAAAAGAGGCCTGCAGAGAAAGAGCAGTTAGCTTACTAACAAAGGTAGGTATCATGAAGTTCTGTGTAAACAAATTCATGGGCATATTTTAAAAGATGGCTACTGATGGATATAGTAATTACTCCCTCTAGTAATAAAGAGCTCTTTTACCTTAAATATAAGAAGCTACTTTGATGGCTAGACCACAATATGCAGTTATCATATATGAAGAAAGGTTACAAAAGCGTAATTCTATGAAGTACTTTTAAGAACAAAATTAGTGCATATGTCACTTTTTTACTGGAGGAAGTACCAAGCATAAAAGTAAGGCAATATATAGGGAACTTTGGTAGTGGAATTCCATTTGGAGTTACAGATGAATATAGATGACTCCATGTACCATGCAAAGGCACGAAGCAAAGGAACTGAGACATTTCATAATAACATAATAACCCTCAGTATTCAAGGCTTTTCTGCATTTCCATCTGCCAGGGTACAACTCATTAACTAAACCCTATAGTCCCATTATTTCTGTACCATCCATCCCATCACTGACATAAAACTGTTGACCCA] [+] EMBL CB668849 [CTTGCGTTGCACTGCAGGCAAGACCTCCTTGATAGTCCGTCCAACCAGCACTCCCCCAATCATTCTGTAGCAGCGCCTCGAGGGGTCAAGTGGCTCGATTGCACCGATCACGAGGGAGTGCTCACTGACTTCCATTTCCAGCTCTGTGATCTTGGAGTAGAGTTGATTCATTTCAGAGCGCATGTTGGCATACATGTTTGCAACCATTTGCTCGTTGATGACTTCTTTGTCAGCACCACTTGGTTGACCAGCCATTTTGCTTGGAATCCACTAAAACATAAATAGATTACAAAAGAGGCCTGCAGAGAAAGAGCAGTTAGCTTACTAACAAAGGTAGGTATCATGAAGTTCTGTGTAAACAAATTCATGGGCATATTTTAAAAGATGGCTACTGATGGATATAGTAATTACTCCCTCTAGTAATAAAGAGCTCTTTTACCTTAAATATAAGAAGCTACTTTGATGGCTAGACCACAATATGCAGTTATCATATATGAAGAAAGGTTACAAAAGCGTAATTCTATGAAGTACTTTTAAGAACAAAATTAGTGCATATGTCACTTTTTTACTGGAGGAAGTACCAAGCATAAAAGTAAGGCAATATATAGGGAACTTTGGTAGTGGAATTCCATTTGGAGTTACAGATGAATATAGATGACTCCATGTACCATGCAAAGGCACGAAGCAAAGGAACTGAGACATTTCATAATAACATAATAACCCTCAGTATTCAAGGCTTTTCTGCATTTCCATCTGCCAGGGTACAACTCATTAACTAAACCCTATAGTCCCATTATTTCTGTACCATCCATCCCATCACTGACATAAAACTGTTGACCCA] consensusID : consensus_510#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 769 fasta sequence [CAATACCATTGGATAAAGTCTAGTGTCAAAGATGTATGGTACATAGCACGTAACATGGAAATTCAACCAGATTTGCCAAAAATAACAGCAGAACATTGGATCATGCGTGTCCCTATAAAACTGGACTCAAAAGGGAGAAATTTCAGTTTATAAGGAACAATGTAATTTTATCACTTCTACTGCCCAGAGGCAGGGCCTACAAGAACACCCTGCGCAGATCCTTCCTTCATGCTGCCTTCTTCCTGGGTGTCACTATCTGCTTTCCGGATTCTGATCTTGTACTTGAGCTCAAACTCCGTGATTTCCTTCTTCTTCTTCTCCAGTGCCTCGTTCATGCGAGCAACAACTTCCTCGAGGCCCTCCTTGTTGCGTTGCACTGCAGGCAAGACCTCCTTGATAGTCCGTTCAACCAGCACTCCCCCAATCATTCTGTAGCAGCGCCTCGAGGGGTCAAGTGGCTCGATTGCACCGATCACGAGGGAGTGCTCACTGACTTCCATTTCCAGCTCTGTGATCTTGGAGTAGAGTTGATTCATTTCAGAGCGCATGTTGGCATACATGTTTGCAACCATTTGCTCGTTGATGACTTCTTTGTCAGCACCACTTGGTTGACCAGCCATTTTGCTTGGAATCCACTAAAACATAAATAGATTACAAAAGAGGCCCTTGCTGTCTCAGCGGATACGCCTCTTCCGGCTGCCGCCGCGGCGGGCGAACTCCGGTGGACGGTGGTCGGCAGCTGCGCGGCGGCGCGGGCGGTGGTCGGCAG] [-] EMBL AK067874 [CAATACCATTGGATAAAGTCTAGTGTCAAAGATGTATGGTACATAGCACGTAACATGGAAATTCAACCAGATTTGCCAAAAATAACAGCAGAACATTGGATCATGCGTGTCCCTATAAAACTGGACTCAAAAGGGAGAAATTTCAGTTTATAAGGAACAATGTAATTTTATCACTTCTACTGCCCAGAGGCAGGGCCTACAAGAACACCCTGCGCAGATCCTTCCTTCATGCTGCCTTCTTCCTGGGTGTCACTATCTGCTTTCCGGATTCTGATCTTGTACTTGAGCTCAAACTCCGTGATTTCCTTCTTCTTCTTCTCCAGTGCCTCGTTCATGCGAGCAACAACTTCCTCGAGGCCCTCCTTGTTGCGTTGCACTGCAGGCAAGACCTCCTTGATAGTCCGTTCAACCAGCACTCCCCCAATCATTCTGTAGCAGCGCCTCGAGGGGTCAAGTGGCTCGATTGCACCGATCACGAGGGAGTGCTCACTGACTTCCATTTCCAGCTCTGTGATCTTGGAGTAGAGTTGATTCATTTCAGAGCGCATGTTGGCATACATGTTTGCAACCATTTGCTCGTTGATGACTTCTTTGTCAGCACCACTTGGTTGACCAGCCATTTTGCTTGGAATCCACTAAAACATAAATAGATTACAAAAGAGGCCCTTGCTGTCTCAGCGGATACGCCTCTTCCGGCTGCCGCCGCGGCGGGCGAACTCCGGTGGACGGTGGTCGGCAGCTGCGCGGCGGCGCGGGCGGTGGTCGGCAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_510#0 CTTGCGTTGCACTGCAGGCAAGACCTCCTTGATAGTCCGTCCAACCAGCACTCCCCCAAT 60 consensus_510#1 ------------------------------------------------------CAATAC 6 * * consensus_510#0 CATTCTGTAGCAGCGCCTCGAGGGGTCAAGTGGCTCGATTGCACCGATCACGAGGGAGTG 120 consensus_510#1 CATTGGATAAAGTCTAGTGTCAAAGATGTATGGTAC-ATAGCAC--GTAACATGGAAATT 63 **** ** * * * *** * ** **** * ** ** * * consensus_510#0 CTCACTGACTT-CCATTTCCAGCTCTGTGATCTTGGAGTAGAGTTGATTCATTTCAGAGC 179 consensus_510#1 CAACCAGATTTGCCAAAAATAACAGCAGAACATTGGATCATGCGTG--TCCCTATAAAAC 121 * * ** ** *** * * * ***** * ** ** * * * * consensus_510#0 GCATGTTGGCATACATGTTTGCAACCATTTGCTCGTTGATGACTTCTTTGTCAGCACCAC 239 consensus_510#1 -----TGGACTCAAAAGGGAGAAAT--TTCAGTTTATAAGGAACAATGTAATTTTATCAC 174 * * * * * * * ** ** * * * ** * * * *** consensus_510#0 TTG-GTTGACCAGCCATTTTGCTTGGAATCCACTAAAACATAAATAGATTACAAAAGAGG 298 consensus_510#1 TTCTACTGCCCAGAGGCAGGGCCTACAAGAACACCCTGCGCAGATCCTTCCTTCATGCTG 234 ** ** **** ** * ** * * ** * * * * consensus_510#0 CCTGCAGAGAAAGAGCAGTTAGCTTACTAACAAAGGTAGGTATCATGAAGTTCTGTGTAA 358 consensus_510#1 CCTTCTTCCTGGGTGTCACTATCTGCTTTCCGGATTCTG--ATCTTGTACTTGAGCTCAA 292 *** * * * ** ** * * * * *** ** * ** * ** consensus_510#0 ACAAATTCATGGGCATATT-TTAAAAGATGGCTACTGATGGATAT-AGTAATTACTCCCT 416 consensus_510#1 ACTCCGTGATTTCCTTCTTCTTCTTCTCCAGTGCCTCGTTCATGCGAGCAACAACTTCCT 352 ** * ** * * ** ** * ** * ** ** ** *** *** consensus_510#0 CTAGTAATAAAGAGCTCTTTTACCTTAAATATAAGAAGCTACTTTGATGGCTAGACCA-- 474 consensus_510#1 CGAGGCCCTCCTTGTTGCGTTGCACTGCAGGCAAGA--CCTCCTTGATAGTCCGTTCAAC 410 * ** * * ** * * * **** * * ***** * * ** consensus_510#0 CAATATGCAGTTATCATATATGAAGAAAGGTTACAAAAGCGTAATTCTATGAAGTACTTT 534 consensus_510#1 CAGCACTCCCCCAATCATTCTGTAGCAGCGCCTCGAGGGGTCAAGTGGCTCGATTGCACC 470 ** * * * * ** ** * * * * * ** * * * * * consensus_510#0 TAAGAACAAAATTAGTGCATA-TGTCACTTTTTTACTGGAGGAAGTACCAAGCATAAAAG 593 consensus_510#1 GATCACGAGGG--AGTGCTCACTGACTTCCATTTCCAGCTCTGTGATCTTGGAGTAGAGT 528 * * * ***** * ** * *** * * * * * ** * consensus_510#0 TAAGGCAATATATAGGGAACTTTGGTAGTGGAATT-----CCATTTGGAGTTACAGATGA 648 consensus_510#1 TGATTCATTTCAGAGCGCATGTTGGCATACATGTTTGCAACCATTTGC--TCGTTGATGA 586 * * ** * * ** * * **** * ** ******* * ***** consensus_510#0 ATA--TAGATGACTCCATGTACCATGCAAAGGCACGAAGCAAAGGA---ACTGAGACATT 703 consensus_510#1 CTTCTTTGTCAGCACCACTTGGT-TGACCAGCCATTTTGCTTGGAATCCACTAAAACATA 645 * * * * *** * ** ** ** ** * * *** * **** consensus_510#0 TCATAATAACATAATAA-CCCTCAGTATTCAAGGCTTTTCTGCATTTCCATCTGCCAGGG 762 consensus_510#1 AATAGATTACAAAAGAGGCCCTTGCTGTCTCAGCGGATACGCCTCTTCCGGCTGCC--GC 703 ** *** ** * **** * * ** * * * **** ***** * consensus_510#0 TACAACTCATTAACTAAACCCTATAGTC-CCATTATTTCTGTACCATC-CATCCCATCAC 820 consensus_510#1 CGCGGCGGGCGAACTCCGGTGGACGGTGGTCGGCAGCTGCGCGGCGGCGCGGGCGGTGGT 763 * * **** * ** * * * * * * * * * consensus_510#0 TGACATAAAACTGTTGACCCA 841 consensus_510#1 CGGCAG--------------- 769 * ** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||