Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 5112 cluster # 5112       Sequences # 3       consensus # 1

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5112#0 length = 944 sequences # 3  
consensusID : consensus_5112#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 944
fasta sequence 
                              [GCTTCTCCATCTTCCTCCACGGCGCCCAAGTTTTGCGTTGCCTAAGCCTGCCTTCCTGCCGTTTCTTTCTGTCGCCCGTCGTCTCCTCCTCCTCCTCTTCCTTCAGCTTTAACTCCGGTAATAAGGTCGACGCGCGCGGCCGCGAGAGGAGGCTGATCAGCCCGGAGAGACGATCTCGTTCGATCGATCGATGGAGTGCCTGCTTGGCTTGCTCAAGGTGCGCGTCATGCGGGGCCTCAACCTGGCCATCTGCGACCCGCTCACCCACAGCAGCGACCCCTACGTCGTCCTCCGCCACGGCTCCCAGAAAGTCAAGTCAAGTATAAGATATCATTCCATCAACCCAGAATGGAACGAGGAACTCACGTTATCAATCACAAACATGATGCTGCCTGTTAAAATTGAAGTGTTTGACAAGGACACCTTCACCAAGGACGACAGCATGGGCGACGCGGAGTTCGGCATCCTGGACTTCGTCGAGATCGCCAAGCAGGACCACAGCCATCTCGGCGACGGCGCGGTGATGAAGACGATCCACCCGGACAAGGAGAACTGCTTCGCGGCGGAGAGCCACATCACATGGAAGGACGGCAAGGTGTCCCAGGACATCGTCCTCAAGCTCAGGAACACCGATACCGGCGAGATCATCCTGCACCTCCAATGGGTTAACATCCCAGGTGTCTCCCGGTGATTCGCCGGCGGCGAGCT--TATATATATATACACACACAACACACACATATATGTATGTATGTATGTGTGTGTGTGTAATATACACACACACACACACATGGCTGGTGTGGACACGGTCTATGAGGTATGAAAGATAAGTAAAAAAAAAAAACATCCTGATGAGATCATGAGATCAGTAGGATGGGATAAAAATATGTGATGCTGATATGCAGCAGGCCTGTGCTACTGGGAGTAATATGCTTGTTTTTCAGTGT]

[+] EMBL AK070911             [GCTTCTCCATCTTCCTCCACGGCGCCCAAGTTTTGCGTTGCCTAAGCCTGCCTTCCTGCCGTTTCTTTCTGTCGCCCGTCGTCTCCTCCTCCTCCTCTTCCTTCAGCTTTAACTCCGGTAATAAGGTCGACGCGCGCGGCCGCGAGAGGAGGCTGATCAGCCCGGAGAGACGATCTCGTTCGATCGATCGATGGAGTGCCTGCTTGGCTTGCTCAAGGTGCGCGTCATGCGGGGCCTCAACCTGGCCATCTGCGACCCGCTCACCCACAGCAGCGACCCCTACGTCGTCCTCCGCCACGGCTCCCAGAAAGTCAAGTCAAGTATAAGATATCATTCCATCAACCCAGAATGGAACGAGGAACTCACGTTATCAATCACAAACATGATGCTGCCTGTTAAAATTGAAGTGTTTGACAAGGACACCTTCACCAAGGACGACAGCATGGGCGACGCGGAGTTCGGCATCCTGGACTTCGTCGAGATCGCCAAGCAGGACCACAGCCATCTCGGCGACGGCGCGGTGATGAAGACGATCCACCCGGACAAGGAGAACTGCTTCGCGGCGGAGAGCCACATCACATGGAAGGACGGCAAGGTGTCCCAGGACATCGTCCTCAAGCTCAGGAACACCGATACCGGCGAGATCATCCTGCACCTCCAATGGGTTAACATCCCAGGTGTCTCCCGGTGATTCGCCGGCGGCGAGCT  TATATATATATACACACACAACACACACATATATGTATGTATGTATGTGTGTGTGTGTAATATACACACACACACACACATGGCTGGTGTGGACACGGTCTATGAGGTATGAAAGATAAGTAAAAAAAAAAAACATCCTGATGAGATCATGAGATCAGTAGGATGGGATAAAAATATGTGATGCTGATATGCAGCAGGCCTGTGCTACTGGGAGTAATATGCTTGTTTTTCAGTGT]
[+] EMBL CF292870             [   TCTCCATCTTCCTCCACTTCGCCCAAGTTTTGCGTTGCCTAAGCCTGCCTTCCTGCCGTTTCTTTCTGTCGCCCGTCGTCTCCTCCTCCTCCTCTTCCTTCAGCTTTAACTCCGGTAATAAGGTCGACGCGCGCGGCCGCGAGAGGAGGTTGATCAGCCCGGAGAGACGATCTCGTTCGATCGATCGATGGAGTGCCTGCTTGGCTTGCTCAAGGTGCGCGTCATGCGGGGCCTCAACCTGGCCATCTGCGACCCGCTCACCCACAGCAGCGACCCCTACGTCGTCCTCCGCCACGGCTCCCAGAAAGTCAAGTCAAGTATAAGATATCATTCCATCAACCCAGAATGGAACGAGGAACTCACGTTATCAATCACAAACATGATGCTGCCTGTTAAAAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[-] EMBL CF292869             [                                                                                                                                                                                                                                                                                                            CTCCCAGAAAGTCAAGTCAAGTATAAGATATCATTCCATCAACCCAGAATGGAACGAGGAACTCACGTTATCAATCACAAACATGATGCTGCCTGTTAAAATTGAAGTGTTTGACAAGGACACCTTCACCAAGGACGACAGCATGGGCGACGCGGAGTTCGGCATCCTGGACTTCGTCGAGATCGCCAAGCAGGACCACAGCCATCTCGGCGACGGCGCGGTGATGAAGACGATCCACCCGGACAAGGAGAACTGCTTCGCGGCGGAGAGCCACATCACATGGAAGGACGGCAAGGTGTCCCAGGACATCGTCCTCAAGCTCAGGAACACCGATACCGGCGAGATCATCCTGCACCTCCAATGGGTTAACATCCCAGGTGTCTCCCGGTGATTCGCCGGCGGCGAGCTTATATATATATATACACACACAACACACACATATATGTATGTATGTATGTGTGTGTGTGTAATAT  ACACACACACACACATGGCTGGTGTGGACACGGTCTATGAGGTATGAAAGATAAGTAAAAAAAA                                                                                                           ]




>consensus_5112#0
GCTTCTCCATCTTCCTCCACGGCGCCCAAGTTTTGCGTTGCCTAAGCCTGCCTTCCTGCC
GTTTCTTTCTGTCGCCCGTCGTCTCCTCCTCCTCCTCTTCCTTCAGCTTTAACTCCGGTA
ATAAGGTCGACGCGCGCGGCCGCGAGAGGAGGCTGATCAGCCCGGAGAGACGATCTCGTT
CGATCGATCGATGGAGTGCCTGCTTGGCTTGCTCAAGGTGCGCGTCATGCGGGGCCTCAA
CCTGGCCATCTGCGACCCGCTCACCCACAGCAGCGACCCCTACGTCGTCCTCCGCCACGG
CTCCCAGAAAGTCAAGTCAAGTATAAGATATCATTCCATCAACCCAGAATGGAACGAGGA
ACTCACGTTATCAATCACAAACATGATGCTGCCTGTTAAAATTGAAGTGTTTGACAAGGA
CACCTTCACCAAGGACGACAGCATGGGCGACGCGGAGTTCGGCATCCTGGACTTCGTCGA
GATCGCCAAGCAGGACCACAGCCATCTCGGCGACGGCGCGGTGATGAAGACGATCCACCC
GGACAAGGAGAACTGCTTCGCGGCGGAGAGCCACATCACATGGAAGGACGGCAAGGTGTC
CCAGGACATCGTCCTCAAGCTCAGGAACACCGATACCGGCGAGATCATCCTGCACCTCCA
ATGGGTTAACATCCCAGGTGTCTCCCGGTGATTCGCCGGCGGCGAGCTTATATATATATA
CACACACAACACACACATATATGTATGTATGTATGTGTGTGTGTGTAATATACACACACA
CACACACATGGCTGGTGTGGACACGGTCTATGAGGTATGAAAGATAAGTAAAAAAAAAAA
ACATCCTGATGAGATCATGAGATCAGTAGGATGGGATAAAAATATGTGATGCTGATATGC
AGCAGGCCTGTGCTACTGGGAGTAATATGCTTGTTTTTCAGTGT

clustalw multiple alignements is not computed in this case
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)